Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Reverse (-)

24182031 .. 24185284

Gene Structure 3254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00401820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACGAGCAAAAGATAGATTGCCAGGAACGAATACATCAACACAGCCATGGACTAATTAGTGATCCTAACTTTGAACTTGGTAGTCATTCTTCTCACCAGCTCTTGGGTCTGCAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCAGCTTCGGCTTTCTATGCAACCGAAAGATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCACAGTTCCCTTCAGGCCAACCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTACAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTACAAATCCTGTGAGAAGTCTAATCAAATCCCAAGCAACCATTTGCCACGCAGTAAGCTCTTTCTGCATCAACAAATGCATCAAGATAGTACTACTGGCTCAGTTAGGAGACCCTTTTCACTTGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTCCAAGAACTTCCTCAGCAACGGTTTCTGCAACCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTTGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCTATACTGAAGATGATGGGATTGGAGGGATTAACCATCTTTCATGTCAAAAGTCATTTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCTGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACTGGCTTGCAAATCAAAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATTCAGCGAAATTTACAGTTGCGCATTGAAGAACAAGGGGAGCGGCTCAAGAAAATGTTTGACCTGCAGCAAAAAACAAGTGACAGCATGTTAAAGACTCCAAACGTGGATTTTACATGCCATGAAAAGGGTCCATCAGATAATGAAATTCAAGTTTCAAGTCCTGAAGGTTCTGGGAATTCCCACTTCCCGTCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

403

Amino Acids

45.43

Weight (kDa)

6.95

Isoelectric Point (pI)

71.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	234 - 283	3.3e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	314 - 361	8e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	1077
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	1048
AciI	CCGC	1 cut(s)	1048
AclWI	GGATC	2 cut(s)	59, 171
AcsI	RAATTY	3 cut(s)	1015, 1152, 1183
AcuI	CTGAAG	4 cut(s)	131, 318, 806, 1191
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	2 cut(s)	106, 1132
AgsI	TTSAA	8 cut(s)	77, 185, 233, 565, 666, 1034, 1157, 1164
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	9 cut(s)	103, 181, 242, 357, 426, 493, 588, 899, 922
AluI	AGCT	9 cut(s)	103, 181, 242, 357, 426, 493, 588, 899, 922
Alw26I	GTCTC	3 cut(s)	300, 538, 618
AlwI	GGATC	2 cut(s)	59, 171
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	2 cut(s)	213, 1072
ApoI	RAATTY	3 cut(s)	1015, 1152, 1183
AspLEI	GCGC	1 cut(s)	1029
AspS9I	GGNCC	2 cut(s)	194, 1136
AsuHPI	GGTGA	4 cut(s)	89, 198, 228, 665
AvaII	GGWCC	1 cut(s)	1136
AxyI	CCTNAGG	1 cut(s)	774
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	719
BbvCI	CCTCAGC	2 cut(s)	628, 918
BbvI	GCAGC	2 cut(s)	225, 1084
BccI	CCATC	5 cut(s)	682, 696, 787, 821, 1147
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	3 cut(s)	300, 538, 618
BfaI	CTAG	2 cut(s)	971, 1001
BfmI	CTRYAG	2 cut(s)	873, 1070
BfuAI	ACCTGC	1 cut(s)	1077
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	3 cut(s)	214, 1049, 1073
BlsI	GCNGC	3 cut(s)	215, 1050, 1074
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	1136
BmgT120I	GGNCC	2 cut(s)	194, 1136
BmiI	GGNNCC	1 cut(s)	1137
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	257, 511, 523
Bpu10I	CCTNAGC	2 cut(s)	628, 918
BpuEI	CTTGAG	3 cut(s)	282, 703, 1037
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	49, 125, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 1132
Bse1I	ACTGG	2 cut(s)	535, 940
Bse21I	CCTNAGG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	49, 125, 159
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	2 cut(s)	106, 1132
BseMII	CTCAG	5 cut(s)	549, 611, 642, 879, 932
BseNI	ACTGG	2 cut(s)	535, 940
BseXI	GCAGC	2 cut(s)	225, 1084
BshFI	GGCC	2 cut(s)	196, 339
BslI	CCNNNNNNNGG	2 cut(s)	106, 1132
BsmAI	GTCTC	3 cut(s)	300, 538, 618
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	538
Bsp143I	GATC	3 cut(s)	64, 163, 712
Bsp19I	CCATGG	2 cut(s)	49, 159
BspACI	CCGC	1 cut(s)	1048
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	5 cut(s)	548, 610, 641, 880, 931
BspLI	GGNNCC	1 cut(s)	1137
BspMAI	CTGCAG	2 cut(s)	877, 1074
BspMI	ACCTGC	1 cut(s)	1077
BspPI	GGATC	2 cut(s)	59, 171
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	1048
BsrI	ACTGG	2 cut(s)	535, 940
BssECI	CCNNGG	3 cut(s)	49, 125, 159
BssMI	GATC	3 cut(s)	64, 163, 712
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	3 cut(s)	49, 125, 159
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	327, 637, 1023
BstC8I	GCNNGC	3 cut(s)	198, 603, 941
BstDEI	CTNAG	6 cut(s)	535, 597, 628, 774, 888, 918
BstDSI	CCRYGG	2 cut(s)	49, 159
BstHHI	GCGC	1 cut(s)	1029
BstKTI	GATC	3 cut(s)	67, 166, 715
BstMAI	GTCTC	3 cut(s)	300, 538, 618
BstMBI	GATC	3 cut(s)	64, 163, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	2 cut(s)	1096, 1125
BstSCI	CCNGG	1 cut(s)	24
BstSFI	CTRYAG	2 cut(s)	873, 1070
BstV1I	GCAGC	2 cut(s)	225, 1084
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	2 cut(s)	49, 159
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	1 cut(s)	956
BveI	ACCTGC	1 cut(s)	1077
Cac8I	GCNNGC	3 cut(s)	198, 603, 941
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	1029
Cfr13I	GGNCC	2 cut(s)	194, 1136
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	8 cut(s)	50, 133, 160, 271, 821, 1093, 1122, 1127
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	6 cut(s)	535, 597, 628, 774, 888, 918
DpnI	GATC	3 cut(s)	66, 165, 714
DpnII	GATC	3 cut(s)	64, 163, 712
Eco130I	CCWWGG	3 cut(s)	49, 125, 159
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	1136
Eco57I	CTGAAG	4 cut(s)	131, 318, 806, 1191
Eco81I	CCTNAGG	1 cut(s)	774
EcoRI	GAATTC	1 cut(s)	1183
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	49, 125, 159
EcoT22I	ATGCAT	2 cut(s)	272, 516
ErhI	CCWWGG	3 cut(s)	49, 125, 159
FaeI	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	8 cut(s)	49, 132, 159, 270, 820, 1092, 1121, 1126
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	214, 1049, 1073
Fsp4HI	GCNGC	3 cut(s)	214, 1049, 1073
FspBI	CTAG	2 cut(s)	971, 1001
FspI	TGCGCA	1 cut(s)	1028
GlaI	GCGC	1 cut(s)	1028
GluI	GCNGC	3 cut(s)	214, 1049, 1073
HaeIII	GGCC	2 cut(s)	196, 339
HhaI	GCGC	1 cut(s)	1029
Hin1II	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
Hin6I	GCGC	1 cut(s)	1027
HinP1I	GCGC	1 cut(s)	1027
HinfI	GANTC	9 cut(s)	233, 293, 368, 656, 706, 849, 869, 1006, 1102
HphI	GGTGA	4 cut(s)	89, 198, 228, 665
Hpy188I	TCNGA	4 cut(s)	376, 386, 889, 1144
Hpy188III	TCNNGA	9 cut(s)	518, 575, 682, 710, 719, 979, 992, 1054, 1169
HpyAV	CCTTC	4 cut(s)	291, 342, 872, 1166
HpyCH4III	ACNGT	3 cut(s)	327, 637, 1023
HpyCH4IV	ACGT	1 cut(s)	1110
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
HpyF3I	CTNAG	6 cut(s)	535, 597, 628, 774, 888, 918
HpySE526I	ACGT	1 cut(s)	1110
Hsp92II	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
HspAI	GCGC	1 cut(s)	1027
Kzo9I	GATC	3 cut(s)	64, 163, 712
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	2 cut(s)	225, 1084
LweI	GCATC	3 cut(s)	257, 511, 523
MaeI	CTAG	2 cut(s)	971, 1001
MaeII	ACGT	1 cut(s)	1110
MaeIII	GTNAC	2 cut(s)	174, 1085
MalI	GATC	3 cut(s)	66, 165, 714
MbiI	CCGCTC	1 cut(s)	1048
MboI	GATC	3 cut(s)	64, 163, 712
MboII	GAAGA	6 cut(s)	84, 651, 654, 707, 799, 1046
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
MlyI	GAGTC	3 cut(s)	302, 863, 1096
MnlI	CCTC	9 cut(s)	330, 343, 370, 637, 658, 796, 927, 946, 975
Mph1103I	ATGCAT	2 cut(s)	272, 516
MseI	TTAA	2 cut(s)	809, 1097
MslI	CAYNNNNRTG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
NcoI	CCATGG	2 cut(s)	49, 159
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	64, 163, 712
NlaIII	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
NlaIV	GGNNCC	1 cut(s)	1137
NmuCI	GTSAC	2 cut(s)	174, 1085
NsbI	TGCGCA	1 cut(s)	1028
NsiI	ATGCAT	2 cut(s)	272, 516
NspI	RCATGY	2 cut(s)	1096, 1125
PfeI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1006
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	215, 1050, 1074
PleI	GAGTC	3 cut(s)	301, 863, 1096
PpsI	GAGTC	3 cut(s)	301, 863, 1096
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	1137
PspPI	GGNCC	2 cut(s)	194, 1136
PstI	CTGCAG	2 cut(s)	877, 1074
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	809, 1097
SatI	GCNGC	3 cut(s)	214, 1049, 1073
Sau3AI	GATC	3 cut(s)	64, 163, 712
Sau96I	GGNCC	2 cut(s)	194, 1136
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	3 cut(s)	302, 863, 1096
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	257, 511, 523
SfcI	CTRYAG	2 cut(s)	873, 1070
SinI	GGWCC	1 cut(s)	1136
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	3 cut(s)	297, 682, 1052
SmoI	CTYRAG	3 cut(s)	297, 682, 1052
Sse9I	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
SsiI	CCGC	1 cut(s)	1048
SspI	AATATT	2 cut(s)	190, 860
SspMI	CTAG	2 cut(s)	971, 1001
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	49, 125, 159
TaaI	ACNGT	3 cut(s)	327, 637, 1023
TaiI	ACGT	1 cut(s)	1113
TaqI	TCGA	2 cut(s)	847, 912
TasI	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	1051
TfiI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1006
Tru1I	TTAA	2 cut(s)	809, 1097
Tru9I	TTAA	2 cut(s)	809, 1097
TscAI	CASTG	1 cut(s)	963
TseFI	GTSAC	2 cut(s)	174, 1085
TseI	GCWGC	2 cut(s)	213, 1072
Tsp45I	GTSAC	2 cut(s)	174, 1085
TspDTI	ATGAA	4 cut(s)	17, 809, 1143, 1164
TspRI	CASTG	1 cut(s)	963
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	1136
XapI	RAATTY	3 cut(s)	1015, 1152, 1183
XceI	RCATGY	2 cut(s)	1096, 1125
XspI	CTAG	2 cut(s)	971, 1001
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	272, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.