Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06800 AT5G06800 AT5G06800 |
| fragaria_vesca | FvH4_6g22540 |
| malus_domestica | MD12G1058400.v1.1 MD14G1059400.v1.1 |
| prunus_persica | Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1 |
| pyrus_communis | pycom12g05230 pycom14g04830 |
| rosa_chinensis | RchiOBHm_Chr3g0480031 |
| rosa_laevigata | RLG00000023522 |
| rosa_multiflora | Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00401820 |
| rosa_rugosa | Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100 |
| rosa_samantha | Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900 |
| rosa_wichuraiana | Rw3G020790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 581 |
| Acc16I | TGCGCA | 1 cut(s) | 9 |
| Acc36I | ACCTGC | 1 cut(s) | 581 |
| AciI | CCGC | 1 cut(s) | 226 |
| AclWI | GGATC | 3 cut(s) | 168, 368, 591 |
| AcsI | RAATTY | 6 cut(s) | 99, 135, 379, 669, 744, 1099 |
| AcuI | CTGAAG | 4 cut(s) | 303, 854, 945, 1281 |
| AcyI | GRCGYC | 1 cut(s) | 1069 |
| AfaI | GTAC | 1 cut(s) | 532 |
| AfeI | AGCGCT | 1 cut(s) | 266 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 118, 543, 650 |
| AflIII | ACRYGT | 1 cut(s) | 171 |
| AgsI | TTSAA | 9 cut(s) | 41, 70, 77, 185, 500, 714, 782, 955, 1118 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 126, 158 |
| Alw21I | GWGCWC | 1 cut(s) | 729 |
| Alw26I | GTCTC | 2 cut(s) | 541, 1255 |
| AlwI | GGATC | 3 cut(s) | 168, 368, 591 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 920 |
| Ama87I | CYCGRG | 1 cut(s) | 730 |
| Aor51HI | AGCGCT | 1 cut(s) | 266 |
| AoxI | GGCC | 1 cut(s) | 322 |
| ApeKI | GCWGC | 5 cut(s) | 148, 429, 1042, 1108, 1132 |
| ApoI | RAATTY | 6 cut(s) | 99, 135, 379, 669, 744, 1099 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 685 |
| AspA2I | CCTAGG | 1 cut(s) | 200 |
| AspLEI | GCGC | 4 cut(s) | 10, 267, 806, 1042 |
| AsuHPI | GGTGA | 2 cut(s) | 198, 713 |
| AsuII | TTCGAA | 1 cut(s) | 231 |
| AvaI | CYCGRG | 1 cut(s) | 730 |
| AvrII | CCTAGG | 1 cut(s) | 200 |
| AxyI | CCTNAGG | 1 cut(s) | 822 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 76, 108 |
| BauI | CACGAG | 1 cut(s) | 767 |
| BbsI | GAAGAC | 2 cut(s) | 84, 1064 |
| Bbv12I | GWGCWC | 1 cut(s) | 729 |
| BbvCI | CCTCAGC | 1 cut(s) | 645 |
| BbvI | GCAGC | 5 cut(s) | 160, 441, 1029, 1095, 1144 |
| BccI | CCATC | 4 cut(s) | 744, 845, 869, 1294 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 875, 909 |
| BcoDI | GTCTC | 2 cut(s) | 541, 1255 |
| BfaI | CTAG | 3 cut(s) | 201, 717, 1055 |
| BfmI | CTRYAG | 3 cut(s) | 343, 401, 884 |
| BfoI | RGCGCY | 3 cut(s) | 268, 807, 1043 |
| BfuAI | ACCTGC | 1 cut(s) | 581 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 801 |
| BglII | AGATCT | 1 cut(s) | 760 |
| BisI | GCNGC | 6 cut(s) | 149, 226, 430, 1043, 1109, 1133 |
| BlnI | CCTAGG | 1 cut(s) | 200 |
| BlpI | GCTNAGC | 1 cut(s) | 632 |
| BlsI | GCNGC | 6 cut(s) | 150, 227, 431, 1044, 1110, 1134 |
| BmcAI | AGTACT | 1 cut(s) | 532 |
| BmeT110I | CYCGRG | 1 cut(s) | 730 |
| BmsI | GCATC | 1 cut(s) | 1207 |
| BpiI | GAAGAC | 2 cut(s) | 84, 1064 |
| BpmI | CTGGAG | 1 cut(s) | 196 |
| Bpu10I | CCTNAGC | 1 cut(s) | 645 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 632 |
| Bpu14I | TTCGAA | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 2 cut(s) | 1121, 1237 |
| BsaHI | GRCGYC | 1 cut(s) | 1069 |
| BsaI | GGTCTC | 2 cut(s) | 541, 1255 |
| BsaJI | CCNNGG | 5 cut(s) | 49, 156, 200, 351, 796 |
| BsaWI | WCCGGW | 1 cut(s) | 619 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 118, 543, 650 |
| Bse118I | RCCGGY | 1 cut(s) | 238 |
| Bse1I | ACTGG | 1 cut(s) | 88 |
| Bse21I | CCTNAGG | 1 cut(s) | 822 |
| BseDI | CCNNGG | 5 cut(s) | 49, 156, 200, 351, 796 |
| BseGI | GGATG | 2 cut(s) | 856, 1286 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 118, 543, 650 |
| BseMII | CTCAG | 7 cut(s) | 308, 468, 552, 623, 659, 927, 1202 |
| BseNI | ACTGG | 1 cut(s) | 88 |
| BseXI | GCAGC | 5 cut(s) | 160, 441, 1029, 1095, 1144 |
| BseYI | CCCAGC | 2 cut(s) | 425, 966 |
| BshFI | GGCC | 1 cut(s) | 324 |
| BsiHKAI | GWGCWC | 1 cut(s) | 729 |
| BsiHKCI | CYCGRG | 1 cut(s) | 730 |
| BsiSI | CCGG | 2 cut(s) | 239, 620 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 118, 543, 650 |
| BsmAI | GTCTC | 2 cut(s) | 541, 1255 |
| BsmI | GAATGC | 1 cut(s) | 10 |
| BsnI | GGCC | 1 cut(s) | 324 |
| Bso31I | GGTCTC | 2 cut(s) | 541, 1255 |
| BsoBI | CYCGRG | 1 cut(s) | 730 |
| Bsp119I | TTCGAA | 1 cut(s) | 231 |
| Bsp1286I | GDGCHC | 1 cut(s) | 729 |
| Bsp143I | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 632 |
| Bsp19I | CCATGG | 2 cut(s) | 49, 351 |
| BspACI | CCGC | 1 cut(s) | 226 |
| BspANI | GGCC | 1 cut(s) | 324 |
| BspCNI | CTCAG | 7 cut(s) | 307, 467, 551, 624, 658, 928, 1201 |
| BspHI | TCATGA | 1 cut(s) | 1075 |
| BspMAI | CTGCAG | 2 cut(s) | 405, 888 |
| BspMI | ACCTGC | 1 cut(s) | 581 |
| BspPI | GGATC | 3 cut(s) | 168, 368, 591 |
| BspT104I | TTCGAA | 1 cut(s) | 231 |
| BspTNI | GGTCTC | 2 cut(s) | 541, 1255 |
| BsrFI | RCCGGY | 1 cut(s) | 238 |
| BsrI | ACTGG | 1 cut(s) | 88 |
| BssAI | RCCGGY | 1 cut(s) | 238 |
| BssECI | CCNNGG | 5 cut(s) | 49, 156, 200, 351, 796 |
| BssMI | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| BssNI | GRCGYC | 1 cut(s) | 1069 |
| BssSI | CACGAG | 1 cut(s) | 767 |
| BssT1I | CCWWGG | 4 cut(s) | 49, 200, 351, 796 |
| Bst2BI | CACGAG | 1 cut(s) | 767 |
| Bst4CI | ACNGT | 3 cut(s) | 285, 312, 1083 |
| BstACI | GRCGYC | 1 cut(s) | 1069 |
| BstBI | TTCGAA | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 3 cut(s) | 240, 369, 1025 |
| BstDEI | CTNAG | 8 cut(s) | 294, 454, 538, 632, 645, 822, 936, 1188 |
| BstDSI | CCRYGG | 2 cut(s) | 49, 351 |
| BstEII | GGTNACC | 1 cut(s) | 204 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 541, 648 |
| BstF5I | GGATG | 2 cut(s) | 856, 1286 |
| BstH2I | RGCGCY | 3 cut(s) | 268, 807, 1043 |
| BstHHI | GCGC | 4 cut(s) | 10, 267, 806, 1042 |
| BstKTI | GATC | 6 cut(s) | 109, 163, 376, 586, 763, 1153 |
| BstMAI | GTCTC | 2 cut(s) | 541, 1255 |
| BstMBI | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 222, 254, 655, 801, 812, 1048 |
| BstNSI | RCATGY | 2 cut(s) | 175, 1209 |
| BstPI | GGTNACC | 1 cut(s) | 204 |
| BstSFI | CTRYAG | 3 cut(s) | 343, 401, 884 |
| BstV1I | GCAGC | 5 cut(s) | 160, 441, 1029, 1095, 1144 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 1064 |
| BstX2I | RGATCY | 1 cut(s) | 760 |
| BstYI | RGATCY | 1 cut(s) | 760 |
| Bsu36I | CCTNAGG | 1 cut(s) | 822 |
| BsuRI | GGCC | 1 cut(s) | 324 |
| BtgI | CCRYGG | 2 cut(s) | 49, 351 |
| BtsCI | GGATG | 2 cut(s) | 856, 1286 |
| BtsI | GCAGTG | 2 cut(s) | 918, 1024 |
| BtsIMutI | CAGTG | 3 cut(s) | 67, 918, 1024 |
| BveI | ACCTGC | 1 cut(s) | 581 |
| Cac8I | GCNNGC | 3 cut(s) | 240, 369, 1025 |
| CaiI | CAGNNNCTG | 1 cut(s) | 920 |
| CciI | TCATGA | 1 cut(s) | 1075 |
| CfoI | GCGC | 4 cut(s) | 10, 267, 806, 1042 |
| Cfr10I | RCCGGY | 1 cut(s) | 238 |
| CseI | GACGC | 1 cut(s) | 1058 |
| Csp6I | GTAC | 1 cut(s) | 531 |
| CviAII | CATG | 9 cut(s) | 50, 130, 172, 191, 352, 869, 1076, 1206, 1211 |
| CviQI | GTAC | 1 cut(s) | 531 |
| DdeI | CTNAG | 8 cut(s) | 294, 454, 538, 632, 645, 822, 936, 1188 |
| DpnI | GATC | 6 cut(s) | 108, 162, 375, 585, 762, 1152 |
| DpnII | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| Eco130I | CCWWGG | 4 cut(s) | 49, 200, 351, 796 |
| Eco31I | GGTCTC | 2 cut(s) | 541, 1255 |
| Eco47III | AGCGCT | 1 cut(s) | 266 |
| Eco57I | CTGAAG | 4 cut(s) | 303, 854, 945, 1281 |
| Eco81I | CCTNAGG | 1 cut(s) | 822 |
| Eco88I | CYCGRG | 1 cut(s) | 730 |
| Eco91I | GGTNACC | 1 cut(s) | 204 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 541, 648 |
| EcoO65I | GGTNACC | 1 cut(s) | 204 |
| EcoRI | GAATTC | 1 cut(s) | 744 |
| EcoT14I | CCWWGG | 4 cut(s) | 49, 200, 351, 796 |
| ErhI | CCWWGG | 4 cut(s) | 49, 200, 351, 796 |
| FaeI | CATG | 9 cut(s) | 53, 133, 175, 194, 355, 872, 1079, 1209, 1214 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 934, 966 |
| FatI | CATG | 9 cut(s) | 49, 129, 171, 190, 351, 868, 1075, 1205, 1210 |
| Fnu4HI | GCNGC | 6 cut(s) | 149, 226, 430, 1043, 1109, 1133 |
| FokI | GGATG | 2 cut(s) | 863, 1273 |
| Fsp4HI | GCNGC | 6 cut(s) | 149, 226, 430, 1043, 1109, 1133 |
| FspBI | CTAG | 3 cut(s) | 201, 717, 1055 |
| FspI | TGCGCA | 1 cut(s) | 9 |
| GlaI | GCGC | 4 cut(s) | 9, 266, 805, 1041 |
| GluI | GCNGC | 6 cut(s) | 149, 226, 430, 1043, 1109, 1133 |
| GsaI | CCCAGC | 2 cut(s) | 429, 970 |
| GsuI | CTGGAG | 1 cut(s) | 196 |
| HaeII | RGCGCY | 3 cut(s) | 268, 807, 1043 |
| HaeIII | GGCC | 1 cut(s) | 324 |
| HapII | CCGG | 2 cut(s) | 239, 620 |
| HgaI | GACGC | 1 cut(s) | 1058 |
| HhaI | GCGC | 4 cut(s) | 10, 267, 806, 1042 |
| Hin1I | GRCGYC | 1 cut(s) | 1069 |
| Hin1II | CATG | 9 cut(s) | 53, 133, 175, 194, 355, 872, 1079, 1209, 1214 |
| Hin6I | GCGC | 4 cut(s) | 8, 265, 804, 1040 |
| HinP1I | GCGC | 4 cut(s) | 8, 265, 804, 1040 |
| HincII | GTYRAC | 1 cut(s) | 1006 |
| HindII | GTYRAC | 1 cut(s) | 1006 |
| HinfI | GANTC | 8 cut(s) | 233, 356, 704, 754, 897, 1090, 1186, 1265 |
| HpaII | CCGG | 2 cut(s) | 239, 620 |
| HphI | GGTGA | 2 cut(s) | 198, 713 |
| Hpy166II | GTNNAC | 1 cut(s) | 1006 |
| Hpy188I | TCNGA | 6 cut(s) | 364, 392, 457, 937, 1191, 1228 |
| Hpy188III | TCNNGA | 8 cut(s) | 581, 678, 730, 758, 767, 1063, 1076, 1138 |
| Hpy8I | GTNNAC | 1 cut(s) | 1006 |
| HpyAV | CCTTC | 3 cut(s) | 327, 720, 920 |
| HpyCH4III | ACNGT | 3 cut(s) | 285, 312, 1083 |
| HpyCH4V | TGCA | 7 cut(s) | 403, 520, 886, 1027, 1045, 1051, 1156 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 222, 254, 655, 801, 812, 1048 |
| HpyF3I | CTNAG | 8 cut(s) | 294, 454, 538, 632, 645, 822, 936, 1188 |
| Hsp92I | GRCGYC | 1 cut(s) | 1069 |
| Hsp92II | CATG | 9 cut(s) | 53, 133, 175, 194, 355, 872, 1079, 1209, 1214 |
| HspAI | GCGC | 4 cut(s) | 8, 265, 804, 1040 |
| KroI | GCCGGC | 1 cut(s) | 238 |
| KroNI | GCCGGC | 1 cut(s) | 240 |
| Kzo9I | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| Lsp1109I | GCAGC | 5 cut(s) | 160, 441, 1029, 1095, 1144 |
| LweI | GCATC | 1 cut(s) | 1207 |
| MaeI | CTAG | 3 cut(s) | 201, 717, 1055 |
| MaeIII | GTNAC | 4 cut(s) | 174, 204, 558, 622 |
| MalI | GATC | 6 cut(s) | 108, 162, 375, 585, 762, 1152 |
| MboI | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| MboII | GAAGA | 9 cut(s) | 25, 84, 755, 847, 1064, 1130, 1153, 1226, 1274 |
| MfeI | CAATTG | 1 cut(s) | 408 |
| MflI | RGATCY | 1 cut(s) | 760 |
| MhlI | GDGCHC | 1 cut(s) | 729 |
| MlyI | GAGTC | 1 cut(s) | 1180 |
| MmeI | TCCRAC | 1 cut(s) | 136 |
| MroNI | GCCGGC | 1 cut(s) | 238 |
| MroXI | GAANNNNTTC | 1 cut(s) | 685 |
| MseI | TTAA | 3 cut(s) | 857, 873, 1182 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1215 |
| MspA1I | CMGCKG | 2 cut(s) | 631, 1108 |
| MspI | CCGG | 2 cut(s) | 239, 620 |
| MunI | CAATTG | 1 cut(s) | 408 |
| Mva1269I | GAATGC | 1 cut(s) | 10 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 222, 254, 655, 801, 812, 1048 |
| NaeI | GCCGGC | 1 cut(s) | 240 |
| NcoI | CCATGG | 2 cut(s) | 49, 351 |
| NdeII | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| NgoMIV | GCCGGC | 1 cut(s) | 238 |
| NlaIII | CATG | 9 cut(s) | 53, 133, 175, 194, 355, 872, 1079, 1209, 1214 |
| NmuCI | GTSAC | 3 cut(s) | 174, 204, 558 |
| NsbI | TGCGCA | 1 cut(s) | 9 |
| NspI | RCATGY | 2 cut(s) | 175, 1209 |
| NspV | TTCGAA | 1 cut(s) | 231 |
| PaeR7I | CTCGAG | 1 cut(s) | 730 |
| PagI | TCATGA | 1 cut(s) | 1075 |
| PaqCI | CACCTGC | 1 cut(s) | 581 |
| PciI | ACATGT | 1 cut(s) | 171 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 774 |
| PctI | GAATGC | 1 cut(s) | 10 |
| PdiI | GCCGGC | 1 cut(s) | 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 685 |
| PfeI | GAWTC | 7 cut(s) | 233, 356, 704, 754, 897, 1090, 1265 |
| PkrI | GCNGC | 6 cut(s) | 150, 227, 431, 1044, 1110, 1134 |
| PleI | GAGTC | 1 cut(s) | 1180 |
| PpsI | GAGTC | 1 cut(s) | 1180 |
| PscI | ACATGT | 1 cut(s) | 171 |
| PspEI | GGTNACC | 1 cut(s) | 204 |
| PspFI | CCCAGC | 2 cut(s) | 425, 966 |
| PstI | CTGCAG | 2 cut(s) | 405, 888 |
| PstNI | CAGNNNCTG | 1 cut(s) | 920 |
| PsuI | RGATCY | 1 cut(s) | 760 |
| PvuII | CAGCTG | 2 cut(s) | 631, 1108 |
| RsaI | GTAC | 1 cut(s) | 532 |
| RsaNI | GTAC | 1 cut(s) | 531 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1215 |
| SaqAI | TTAA | 3 cut(s) | 857, 873, 1182 |
| SatI | GCNGC | 6 cut(s) | 149, 226, 430, 1043, 1109, 1133 |
| Sau3AI | GATC | 6 cut(s) | 106, 160, 373, 583, 760, 1150 |
| ScaI | AGTACT | 1 cut(s) | 532 |
| SchI | GAGTC | 1 cut(s) | 1180 |
| SduI | GDGCHC | 1 cut(s) | 729 |
| SfaNI | GCATC | 1 cut(s) | 1207 |
| SfcI | CTRYAG | 3 cut(s) | 343, 401, 884 |
| Sfr274I | CTCGAG | 1 cut(s) | 730 |
| SfuI | TTCGAA | 1 cut(s) | 231 |
| SlaI | CTCGAG | 1 cut(s) | 730 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1215 |
| SmlI | CTYRAG | 3 cut(s) | 730, 1136, 1252 |
| SmoI | CTYRAG | 3 cut(s) | 730, 1136, 1252 |
| SsiI | CCGC | 1 cut(s) | 226 |
| SspMI | CTAG | 3 cut(s) | 201, 717, 1055 |
| StyI | CCWWGG | 4 cut(s) | 49, 200, 351, 796 |
| TaaI | ACNGT | 3 cut(s) | 285, 312, 1083 |
| TaqI | TCGA | 5 cut(s) | 231, 731, 748, 895, 960 |
| TatI | WGTACW | 1 cut(s) | 530 |
| TauI | GCSGC | 1 cut(s) | 228 |
| TfiI | GAWTC | 7 cut(s) | 233, 356, 704, 754, 897, 1090, 1265 |
| Tru1I | TTAA | 3 cut(s) | 857, 873, 1182 |
| Tru9I | TTAA | 3 cut(s) | 857, 873, 1182 |
| TscAI | CASTG | 3 cut(s) | 67, 925, 1024 |
| TseFI | GTSAC | 3 cut(s) | 174, 204, 558 |
| TseI | GCWGC | 5 cut(s) | 148, 429, 1042, 1108, 1132 |
| Tsp45I | GTSAC | 3 cut(s) | 174, 204, 558 |
| TspDTI | ATGAA | 9 cut(s) | 17, 348, 351, 594, 857, 992, 1064, 1092, 1227 |
| TspRI | CASTG | 3 cut(s) | 67, 925, 1024 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 541, 648 |
| XapI | RAATTY | 6 cut(s) | 99, 135, 379, 669, 744, 1099 |
| XceI | RCATGY | 2 cut(s) | 175, 1209 |
| XhoI | CTCGAG | 1 cut(s) | 730 |
| XmaJI | CCTAGG | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 685 |
| XspI | CTAG | 3 cut(s) | 201, 717, 1055 |
| ZrmI | AGTACT | 1 cut(s) | 532 |