Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003684.1

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1997

Gene Structure 1997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003684.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

tctcaatcttataaatcctctgagaagtctgatcaaatcccaagcaaccatttgccaggcagtaagctctttctgcatcaagatagtactagtggctcagttaggagacccttttcactagctttcaaagaaaatcaggaacaagtgagcttcttttctcagcaagcaaagcagtctccaagaacttcctcaggaacggtttctgcagcctctggtgattcttcttcaaccagcccatcactctcaagtaaaacacgaatacgatggaatcaagatcttcacgagaagtttgttgagtgtgtcaatcgtcttgggggtgctgacaaagcaacacctaaggcgatactgaagatgatgggattggagggactaaccatctttcatgtcaaaagtcatttgcagaaatatcgaatcgcaaaatatttgccagactctgcagaaggaaaatctgagaaaagagctaatgtgaatgtcgaacctcagcttgatgtgaaaactggcttgcaaatcaaagaggcactgcaactacaactagatgtccagaggcaacttcacgaacaactagagattcagcgaaatttacagttgcgcattgaagaacaaggggagcggctcaagaaaatgtttgacctgcagcaaaaaacaagtgatagcacgttaaagactccaaacgtggattttacatgccatgaaaatggtccatcagataatgaaattcaagtttcaagtcctgaaggttctgggaattcccacttcccatccaagataagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

257

Amino Acids

28.68

Weight (kDa)

8.95

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
Acc16I	TGCGCA	1 cut(s)	590
Acc36I	ACCTGC	1 cut(s)	639
AccBSI	CCGCTC	1 cut(s)	610
AciI	CCGC	1 cut(s)	610
AcsI	RAATTY	3 cut(s)	577, 714, 745
AcuI	CTGAAG	2 cut(s)	368, 753
AfaI	GTAC	1 cut(s)	88
AgsI	TTSAA	5 cut(s)	127, 228, 596, 719, 726
AhlI	ACTAGT	1 cut(s)	89
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	5 cut(s)	67, 122, 150, 461, 484
AluI	AGCT	5 cut(s)	67, 122, 150, 461, 484
Alw26I	GTCTC	2 cut(s)	100, 180
AlwNI	CAGNNNCTG	2 cut(s)	212, 434
ApeKI	GCWGC	2 cut(s)	206, 634
ApoI	RAATTY	3 cut(s)	577, 714, 745
Asp700I	GAANNNNTTC	1 cut(s)	199
AspLEI	GCGC	1 cut(s)	591
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	698
AxyI	CCTNAGG	2 cut(s)	190, 336
BauI	CACGAG	1 cut(s)	281
BbvCI	CCTCAGC	1 cut(s)	480
BbvI	GCAGC	2 cut(s)	218, 646
BccI	CCATC	6 cut(s)	244, 258, 349, 383, 709, 766
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	100, 180
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	4 cut(s)	90, 119, 533, 563
BfmI	CTRYAG	3 cut(s)	204, 435, 632
BfuAI	ACCTGC	1 cut(s)	639
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	3 cut(s)	207, 611, 635
BlsI	GCNGC	3 cut(s)	208, 612, 636
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	698
BmgT120I	GGNCC	1 cut(s)	698
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	85
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	229, 599
BsaI	GGTCTC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	2 cut(s)	190, 336
BseBI	CCWGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	758
BseMII	CTCAG	6 cut(s)	12, 111, 173, 204, 441, 494
BseNI	ACTGG	1 cut(s)	502
BseXI	GCAGC	2 cut(s)	218, 646
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	100, 180
BsmFI	GGGAC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	31, 274
BspACI	CCGC	1 cut(s)	610
BspCNI	CTCAG	6 cut(s)	13, 110, 172, 203, 442, 493
BspMAI	CTGCAG	3 cut(s)	208, 439, 636
BspMI	ACCTGC	1 cut(s)	639
BspTNI	GGTCTC	1 cut(s)	100
BsrBI	CCGCTC	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	31, 274
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	199, 585
BstC8I	GCNNGC	2 cut(s)	165, 503
BstDEI	CTNAG	7 cut(s)	21, 97, 159, 190, 336, 450, 480
BstF5I	GGATG	1 cut(s)	758
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	2 cut(s)	34, 277
BstMAI	GTCTC	2 cut(s)	100, 180
BstMBI	GATC	2 cut(s)	31, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 169, 326
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	1 cut(s)	687
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	3 cut(s)	204, 435, 632
BstV1I	GCAGC	2 cut(s)	218, 646
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	1 cut(s)	274
Bsu36I	CCTNAGG	2 cut(s)	190, 336
BtsCI	GGATG	1 cut(s)	758
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	639
Cac8I	GCNNGC	2 cut(s)	165, 503
CaiI	CAGNNNCTG	2 cut(s)	212, 434
CfoI	GCGC	1 cut(s)	591
Cfr13I	GGNCC	1 cut(s)	698
Csp6I	GTAC	1 cut(s)	87
CviAII	CATG	3 cut(s)	383, 684, 689
CviQI	GTAC	1 cut(s)	87
DdeI	CTNAG	7 cut(s)	21, 97, 159, 190, 336, 450, 480
DpnI	GATC	2 cut(s)	33, 276
DpnII	GATC	2 cut(s)	31, 274
Eco31I	GGTCTC	1 cut(s)	100
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	2 cut(s)	368, 753
Eco81I	CCTNAGG	2 cut(s)	190, 336
EcoRI	GAATTC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	386, 687, 692
FaiI	YATR	4 cut(s)	12, 384, 685, 690
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	3 cut(s)	382, 683, 688
FbaI	TGATCA	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	207, 611, 635
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	3 cut(s)	207, 611, 635
FspBI	CTAG	4 cut(s)	90, 119, 533, 563
FspI	TGCGCA	1 cut(s)	590
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	3 cut(s)	207, 611, 635
HhaI	GCGC	1 cut(s)	591
Hin1II	CATG	3 cut(s)	386, 687, 692
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HinfI	GANTC	6 cut(s)	218, 268, 411, 431, 568, 664
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	22, 31, 451, 706
Hpy188III	TCNNGA	9 cut(s)	80, 137, 192, 272, 281, 541, 554, 616, 731
HpyAV	CCTTC	2 cut(s)	434, 728
HpyCH4III	ACNGT	2 cut(s)	199, 585
HpyCH4IV	ACGT	2 cut(s)	656, 672
HpyCH4V	TGCA	7 cut(s)	76, 206, 400, 437, 505, 523, 634
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 169, 326
HpyF3I	CTNAG	7 cut(s)	21, 97, 159, 190, 336, 450, 480
HpySE526I	ACGT	2 cut(s)	656, 672
Hsp92II	CATG	3 cut(s)	386, 687, 692
HspAI	GCGC	1 cut(s)	589
Ksp22I	TGATCA	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	31, 274
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	2 cut(s)	218, 646
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	4 cut(s)	90, 119, 533, 563
MaeII	ACGT	2 cut(s)	656, 672
MalI	GATC	2 cut(s)	33, 276
MbiI	CCGCTC	1 cut(s)	610
MboI	GATC	2 cut(s)	31, 274
MboII	GAAGA	5 cut(s)	213, 216, 269, 361, 608
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	3 cut(s)	577, 714, 745
MlyI	GAGTC	2 cut(s)	425, 658
MnlI	CCTC	7 cut(s)	28, 199, 220, 358, 489, 508, 537
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	659
MslI	CAYNNNNRTG	1 cut(s)	693
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	3 cut(s)	73, 169, 326
NdeII	GATC	2 cut(s)	31, 274
NlaIII	CATG	3 cut(s)	386, 687, 692
NsbI	TGCGCA	1 cut(s)	590
NspI	RCATGY	1 cut(s)	687
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	218, 268, 411, 568
PkrI	GCNGC	3 cut(s)	208, 612, 636
PleI	GAGTC	2 cut(s)	425, 658
PpsI	GAGTC	2 cut(s)	425, 658
PsiI	TTATAA	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	3 cut(s)	208, 439, 636
PstNI	CAGNNNCTG	2 cut(s)	212, 434
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	693
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	3 cut(s)	207, 611, 635
Sau3AI	GATC	2 cut(s)	31, 274
Sau96I	GGNCC	1 cut(s)	698
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	425, 658
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	85
SfcI	CTRYAG	3 cut(s)	204, 435, 632
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	244, 614
SmoI	CTYRAG	2 cut(s)	244, 614
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	3 cut(s)	577, 714, 745
SsiI	CCGC	1 cut(s)	610
SspI	AATATT	1 cut(s)	422
SspMI	CTAG	4 cut(s)	90, 119, 533, 563
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	199, 585
TaiI	ACGT	2 cut(s)	659, 675
TaqI	TCGA	2 cut(s)	409, 474
TasI	AATT	3 cut(s)	577, 714, 745
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	1 cut(s)	613
TfiI	GAWTC	4 cut(s)	218, 268, 411, 568
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	2 cut(s)	206, 634
TspDTI	ATGAA	3 cut(s)	371, 705, 726
TspRI	CASTG	1 cut(s)	525
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	3 cut(s)	577, 714, 745
XceI	RCATGY	1 cut(s)	687
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	4 cut(s)	90, 119, 533, 563
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.