Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006880

Physical Location & Seq

Genomic Coordinates Forward (+)

5109633 .. 5111610

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g05230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAATGGGAAGAAGATTGATTGCCAAGAAAGAAATCAACAAAGCCATGAATTAATCGGTGAGTACGGTTTTGAACTTGGTAATCAGTCTTGTCAAACTTTTGGTCAGCAGCAACAGCAGGCTTGGAACAATATGGGAATTTGGGTTCAGCAACCCACCATGGATCATGAAGTGTCACTGCTGCAAAATCTTGGGCCTCCTAATACTCCCAGCAGCATTATCAGCCGCTTCGAATCGCCGGTTTCAGCTTTCTACGCAACTGAACTCTATATGGGGGGGTTTCCACAGTATGACTCTCAAGCTGGTCAGAATCCTCAGTTCCCTTCAGGCCAATCTAATAATGAAAGCTATAGCTCCATGAATTCATCTGAGCAAGATCCGAATTTCGACATCAGAAACACCCTGCAATCAATTGTGAAATCTCAACCCAGCAGCTATCAATACCATAAATCCTCAGAGAAGTGTAATCAAATCCCAGCAAGCGATTTGTCAGGCAGTAAGCTGTTTGCACATCAATCAAATAAGTTGCATGGAGATCATAATACTACTACAGTTAGAAGACCCTCCTTTTCCCTTCCTTCTAAAGAAAATCAGGATCAAGTAGGTTATTGTAATTCGTTCACTACTTCTCCGGTTACACAACTGAGCTTCTTTTCTGGGCAAGGAAAGCAGCCTCCAAGAATTTCCTCCAGACATGTTTCCGATTGTTATGGCGATTCTTCTTCATCCAGCCCTGTACTCTCGAGTAAAACACGAATTCGTTGGAATCAAGATCTTCATGAGAAGTTCGTTGAGTGCGTAAATCGTCTTGGGGGTGCTGACAAAGCAACACCGAAGGCAATATTGACGATGATGGGTTTGGACGGATTAACCATCTTTCATGTCAAAAGTCATCTGCAGAAATATCGAATTGCGAAATACCTACCAGACCCAGCAGAAGGAAAATCTGAGAAAAGAACTACTTTGAATGTTGAACCCCAGCTCAATGTGAAAGCTTGCTTGCAAATTAAAGAGGCACTCCAACTGCAATTAGATGTCCAGCGACGTCTTCACGAACAATTGGAGACTCAACGAAAGTTACAGTTACGAATTGAAGAACAAGGGAAGCGGCTCAGGAAGATGTTTGATCTGCAACAACAAACAAGTAGTAACCCGTTGAAGGCTCAGAACTCGGATGTCACATGCCATGAAGCTTCCCCATCAAATAGTCTCGACGATACTGATCAGCTTTCAACTCCTGAAGGTTCTAGTTTTCCCTCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

424

Amino Acids

47.47

Weight (kDa)

7.18

Isoelectric Point (pI)

67.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06800 AT5G06800 AT5G06800
fragaria_vesca	FvH4_6g22540
malus_domestica	MD12G1058400.v1.1 MD14G1059400.v1.1
prunus_persica	Prupe.7G075200_v2.0.a1 Prupe.7G075300_v2.0.a1 Prupe.7G075300_v2.0.a1
pyrus_communis	pycom12g05230 pycom14g04830
rosa_chinensis	RchiOBHm_Chr3g0480031
rosa_laevigata	RLG00000023522
rosa_multiflora	Rmu_co7976220.1_g000001 Rmu_sc0003684.1_g000001
rosa_roxburghii	Rroxscaffold_6G00401820
rosa_rugosa	Rorug03G0179800 Rorug03G0179900 Rorug03G0180000 Rorug03G0180100 Rorug03G0180100
rosa_samantha	Rh3AG231100 Rh3BG263600 Rh3CG261000 Rh3DG256900
rosa_wichuraiana	Rw3G020790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1048
AciI	CCGC	2 cut(s)	226, 1108
AclWI	GGATC	3 cut(s)	171, 371, 603
AcsI	RAATTY	5 cut(s)	138, 361, 382, 681, 756
AcuI	CTGAAG	2 cut(s)	309, 1260
AcyI	GRCGYC	1 cut(s)	1045
AfaI	GTAC	2 cut(s)	65, 738
AfiI	CCNNNNNNNGG	2 cut(s)	938, 1159
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	6 cut(s)	74, 967, 974, 1094, 1159, 1233
AloI	GAACNNNNNNTCC	2 cut(s)	129, 161
Alw26I	GTCTC	2 cut(s)	1058, 1214
AlwI	GGATC	3 cut(s)	171, 371, 603
Ama87I	CYCGRG	1 cut(s)	742
AoxI	GGCC	2 cut(s)	194, 328
ApeKI	GCWGC	5 cut(s)	109, 181, 213, 432, 670
ApoI	RAATTY	5 cut(s)	138, 361, 382, 681, 756
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	231
AvaI	CYCGRG	1 cut(s)	742
BbsI	GAAGAC	2 cut(s)	565, 1040
BbvI	GCAGC	5 cut(s)	121, 168, 225, 444, 682
BccI	CCATC	3 cut(s)	847, 881, 1207
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BclI	TGATCA	1 cut(s)	1222
BcoDI	GTCTC	2 cut(s)	1058, 1214
BfaI	CTAG	1 cut(s)	1248
BfmI	CTRYAG	3 cut(s)	349, 549, 896
BglII	AGATCT	1 cut(s)	772
BisI	GCNGC	7 cut(s)	110, 182, 214, 226, 433, 671, 1109
BlsI	GCNGC	7 cut(s)	111, 183, 215, 227, 434, 672, 1110
BmeT110I	CYCGRG	1 cut(s)	742
BmgT120I	GGNCC	1 cut(s)	194
BpiI	GAAGAC	2 cut(s)	565, 1040
BpmI	CTGGAG	1 cut(s)	673
Bpu10I	CCTNAGC	1 cut(s)	1112
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	1221
BsaHI	GRCGYC	1 cut(s)	1045
BsaJI	CCNNGG	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	631
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	2 cut(s)	938, 1159
Bse118I	RCCGGY	1 cut(s)	238
Bse8I	GATNNNNATC	1 cut(s)	1221
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	725, 1180
BseJI	GATNNNNATC	1 cut(s)	1221
BseLI	CCNNNNNNNGG	2 cut(s)	938, 1159
BseMII	CTCAG	7 cut(s)	329, 360, 468, 635, 939, 1126, 1178
BseXI	GCAGC	5 cut(s)	121, 168, 225, 444, 682
BseYI	CCCAGC	5 cut(s)	209, 428, 475, 931, 978
BshFI	GGCC	2 cut(s)	196, 330
BsiHKCI	CYCGRG	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	239, 632
BslI	CCNNNNNNNGG	2 cut(s)	938, 1159
BsmAI	GTCTC	2 cut(s)	1058, 1214
BsnI	GGCC	2 cut(s)	196, 330
BsoBI	CYCGRG	1 cut(s)	742
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	2 cut(s)	226, 1108
BspANI	GGCC	2 cut(s)	196, 330
BspCNI	CTCAG	7 cut(s)	328, 361, 467, 636, 940, 1125, 1177
BspHI	TCATGA	2 cut(s)	166, 778
BspMAI	CTGCAG	1 cut(s)	900
BspPI	GGATC	3 cut(s)	171, 371, 603
BspT104I	TTCGAA	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
BssNI	GRCGYC	1 cut(s)	1045
BssT1I	CCWWGG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	68, 288, 553, 1083
BstACI	GRCGYC	1 cut(s)	1045
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	4 cut(s)	120, 481, 997, 1001
BstDEI	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	725, 1180
BstKTI	GATC	7 cut(s)	166, 379, 538, 598, 775, 1129, 1225
BstMAI	GTCTC	2 cut(s)	1058, 1214
BstMBI	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
BstNSI	RCATGY	2 cut(s)	698, 1185
BstSFI	CTRYAG	3 cut(s)	349, 549, 896
BstV1I	GCAGC	5 cut(s)	121, 168, 225, 444, 682
BstV2I	GAAGAC	2 cut(s)	565, 1040
BstX2I	RGATCY	2 cut(s)	376, 772
BstYI	RGATCY	2 cut(s)	376, 772
BsuRI	GGCC	2 cut(s)	196, 330
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	725, 1180
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	4 cut(s)	120, 481, 997, 1001
CciI	TCATGA	2 cut(s)	166, 778
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	64, 737
CviQI	GTAC	2 cut(s)	64, 737
DdeI	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
DpnI	GATC	7 cut(s)	165, 378, 537, 597, 774, 1128, 1224
DpnII	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
Eco130I	CCWWGG	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	309, 1260
Eco88I	CYCGRG	1 cut(s)	742
EcoRI	GAATTC	2 cut(s)	361, 756
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FalI	AAGNNNNNCTT	2 cut(s)	946, 978
FbaI	TGATCA	1 cut(s)	1222
Fnu4HI	GCNGC	7 cut(s)	110, 182, 214, 226, 433, 671, 1109
FokI	GGATG	2 cut(s)	712, 1187
Fsp4HI	GCNGC	7 cut(s)	110, 182, 214, 226, 433, 671, 1109
FspBI	CTAG	1 cut(s)	1248
GluI	GCNGC	7 cut(s)	110, 182, 214, 226, 433, 671, 1109
GsaI	CCCAGC	5 cut(s)	213, 432, 479, 935, 982
GsuI	CTGGAG	1 cut(s)	673
HaeIII	GGCC	2 cut(s)	196, 330
HapII	CCGG	2 cut(s)	239, 632
Hin1I	GRCGYC	1 cut(s)	1045
HindIII	AAGCTT	2 cut(s)	993, 1191
HinfI	GANTC	6 cut(s)	233, 293, 310, 716, 766, 1066
HpaII	CCGG	2 cut(s)	239, 632
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	621
Hpy188I	TCNGA	9 cut(s)	309, 370, 381, 395, 457, 703, 949, 1167, 1174
Hpy8I	GTNNAC	1 cut(s)	621
Hpy99I	CGWCG	2 cut(s)	1047, 1217
HpyAV	CCTTC	7 cut(s)	333, 584, 588, 829, 932, 1153, 1235
HpyCH4III	ACNGT	4 cut(s)	68, 288, 553, 1083
HpyCH4IV	ACGT	1 cut(s)	1045
HpyCH4V	TGCA	8 cut(s)	184, 406, 509, 529, 898, 1003, 1027, 1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
HpyF3I	CTNAG	7 cut(s)	315, 369, 454, 644, 948, 1112, 1164
HpySE526I	ACGT	1 cut(s)	1045
Hsp92I	GRCGYC	1 cut(s)	1045
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	5 cut(s)	121, 168, 225, 444, 682
MaeI	CTAG	1 cut(s)	1248
MaeII	ACGT	1 cut(s)	1045
MaeIII	GTNAC	6 cut(s)	174, 634, 1077, 1083, 1148, 1177
MalI	GATC	7 cut(s)	165, 378, 537, 597, 774, 1128, 1224
MboI	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
MboII	GAAGA	9 cut(s)	22, 25, 570, 711, 714, 767, 1040, 1106, 1129
MfeI	CAATTG	2 cut(s)	411, 1058
MflI	RGATCY	2 cut(s)	376, 772
MlyI	GAGTC	2 cut(s)	287, 1060
MmeI	TCCRAC	2 cut(s)	743, 1045
MnlI	CCTC	8 cut(s)	207, 324, 463, 574, 684, 697, 1006, 1267
MseI	TTAA	3 cut(s)	53, 869, 1008
MspI	CCGG	2 cut(s)	239, 632
MunI	CAATTG	2 cut(s)	411, 1058
MwoI	GCNNNNNNNGC	5 cut(s)	115, 222, 254, 667, 824
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
NmuCI	GTSAC	2 cut(s)	174, 1177
NspI	RCATGY	2 cut(s)	698, 1185
NspV	TTCGAA	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	742
PagI	TCATGA	2 cut(s)	166, 778
PciI	ACATGT	1 cut(s)	694
PcsI	WCGNNNNNNNCGW	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	233, 310, 716, 766
PkrI	GCNGC	7 cut(s)	111, 183, 215, 227, 434, 672, 1110
PleI	GAGTC	2 cut(s)	287, 1060
PpsI	GAGTC	2 cut(s)	287, 1060
PscI	ACATGT	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	53
PspFI	CCCAGC	5 cut(s)	209, 428, 475, 931, 978
PspPI	GGNCC	1 cut(s)	194
PstI	CTGCAG	1 cut(s)	900
PsuI	RGATCY	2 cut(s)	376, 772
RsaI	GTAC	2 cut(s)	65, 738
RsaNI	GTAC	2 cut(s)	64, 737
SaqAI	TTAA	3 cut(s)	53, 869, 1008
SatI	GCNGC	7 cut(s)	110, 182, 214, 226, 433, 671, 1109
Sau3AI	GATC	7 cut(s)	163, 376, 535, 595, 772, 1126, 1222
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	2 cut(s)	287, 1060
SfcI	CTRYAG	3 cut(s)	349, 549, 896
Sfr274I	CTCGAG	1 cut(s)	742
SfuI	TTCGAA	1 cut(s)	231
SlaI	CTCGAG	1 cut(s)	742
SmlI	CTYRAG	2 cut(s)	297, 742
SmoI	CTYRAG	2 cut(s)	297, 742
SsiI	CCGC	2 cut(s)	226, 1108
SspI	AATATT	1 cut(s)	843
SspMI	CTAG	1 cut(s)	1248
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	4 cut(s)	68, 288, 553, 1083
TaiI	ACGT	1 cut(s)	1048
TaqI	TCGA	5 cut(s)	231, 387, 743, 907, 1212
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	2 cut(s)	228, 1111
TfiI	GAWTC	4 cut(s)	233, 310, 716, 766
Tru1I	TTAA	3 cut(s)	53, 869, 1008
Tru9I	TTAA	3 cut(s)	53, 869, 1008
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	174, 1177
TseI	GCWGC	5 cut(s)	109, 181, 213, 432, 670
Tsp45I	GTSAC	2 cut(s)	174, 1177
TspGWI	ACGGA	1 cut(s)	879
TspRI	CASTG	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	53
XapI	RAATTY	5 cut(s)	138, 361, 382, 681, 756
XceI	RCATGY	2 cut(s)	698, 1185
XhoI	CTCGAG	1 cut(s)	742
XspI	CTAG	1 cut(s)	1248
ZraI	GACGTC	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.