Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

3341200 .. 3343079

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAACGGAATTGACGCAATTGAGAAAACAAGAAAGCAACAATCTCAACGGCGTTAATGGAGGATTCATGGCGATTGACCAATTCGTCCCAAATGATTGGAACTTCGATTACCTCTGTTTCAACAATCTTCTCCAAGAAGACGACAACATTGATCATCCTTCTTCTTCTTCTTTGATGAATCTAATTTCTCAGCCACCTCCATTGCTTCATCAACCACCACAACCGTCGTCACCTCTTTATGATTCTCCGCCGCTCTCCTCCGCTTTCGACTATCCTTTTCTCGAGGATATCATACACTCCTCTTATTCTCCTCCTCCATTGATCCTTCCGGCTTCGCAAGAGAACACCAACAATTACTCACCATTGATGGAGGAAAGCAAGAGCTTCATAAGCATCGGAGAGACTAACAAGAAAAGGAGTAACAAGAAGCTTGAAGGTCAGCCTTCGAAGAATCTTATGGCGGAGAGACGGCGGAGGAAACGGTTAAATGACCGACTCTCCCTGCTCCGATCCATTGTCCCTAAAATCACCAAGATGGATAGGACATCGATACTAGGAGATGCAATAGATTACATGAAGGAGCTTTTGGACAAGATTAACAAGTTGCAAGAAGACGAACAAGAACTTGGAAGCAACTCTCATCTAAGCACCCTCATTACAAACGAATCTATGGTCAGAAACTCCCTAAAGTTTGAAGTAGATCAAAGGGAAGTTAATACGCATATTGATATATGTTGTCCTACGAAACCGGGTTTGGTTGTATCAACGGTTAGTACATTGGAGACTCTAGGATTAGAGATTGAACAATGTGTCATTAGCTGCTTCAGTGACTTCTCATTGCAGGCTTCTTGTTTTGAGGTTGGTGAGCAGAGATACATGGTTACTTCGGAAGCTACTAAACAAGCACTAATCAGAAACGCAGGTTATGGAGGAAGATGTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

315

Amino Acids

35.55

Weight (kDa)

5.05

Isoelectric Point (pI)

70.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	153 - 201	4.9e-06	Transcription factor SAC51 bHLH domain
HLH	PF00010	154 - 196	2.2e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	235 - 305	3.8e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	914
AccBSI	CCGCTC	1 cut(s)	256
AciI	CCGC	5 cut(s)	251, 254, 264, 464, 475
AclWI	GGATC	2 cut(s)	319, 507
AcuI	CTGAAG	1 cut(s)	811
AfaI	GTAC	1 cut(s)	778
AgsI	TTSAA	4 cut(s)	124, 437, 698, 806
AjuI	GAANNNNNNNTTGG	6 cut(s)	572, 604, 612, 644, 740, 772
AluBI	AGCT	5 cut(s)	387, 433, 586, 822, 896
AluI	AGCT	5 cut(s)	387, 433, 586, 822, 896
Alw26I	GTCTC	3 cut(s)	398, 463, 779
AlwI	GGATC	2 cut(s)	319, 507
Ama87I	CYCGRG	1 cut(s)	284
ApeKI	GCWGC	1 cut(s)	822
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
AsuC2I	CCSGG	1 cut(s)	753
AsuHPI	GGTGA	4 cut(s)	225, 354, 523, 878
AsuII	TTCGAA	1 cut(s)	449
AvaI	CYCGRG	1 cut(s)	284
BbsI	GAAGAC	2 cut(s)	147, 621
BbvI	GCAGC	1 cut(s)	809
BccI	CCATC	2 cut(s)	364, 532
BceAI	ACGGC	2 cut(s)	67, 488
BclI	TGATCA	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	3 cut(s)	398, 463, 779
BfaI	CTAG	2 cut(s)	557, 791
BfmI	CTRYAG	1 cut(s)	944
BfuAI	ACCTGC	1 cut(s)	914
BisI	GCNGC	2 cut(s)	254, 823
BlsI	GCNGC	2 cut(s)	255, 824
Bme1390I	CCNGG	1 cut(s)	753
BmeT110I	CYCGRG	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	2 cut(s)	405, 553
BpiI	GAAGAC	2 cut(s)	147, 621
Bpu14I	TTCGAA	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	753
Bsa29I	ATCGAT	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse3DI	GCAATG	2 cut(s)	203, 839
BseCI	ATCGAT	1 cut(s)	551
BseGI	GGATG	1 cut(s)	157
BseMI	GCAATG	2 cut(s)	203, 839
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	4 cut(s)	250, 292, 303, 306
BseXI	GCAGC	1 cut(s)	809
BshVI	ATCGAT	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	284
BsiSI	CCGG	2 cut(s)	332, 752
BslFI	GGGAC	2 cut(s)	74, 506
BsmAI	GTCTC	3 cut(s)	398, 463, 779
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	2 cut(s)	74, 506
BsoBI	CYCGRG	1 cut(s)	284
Bsp119I	TTCGAA	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	154, 324, 512, 703
BspACI	CCGC	5 cut(s)	251, 254, 264, 464, 475
BspCNI	CTCAG	1 cut(s)	205
BspDI	ATCGAT	1 cut(s)	551
BspMI	ACCTGC	1 cut(s)	914
BspPI	GGATC	2 cut(s)	319, 507
BspT104I	TTCGAA	1 cut(s)	449
BsrBI	CCGCTC	1 cut(s)	256
BsrDI	GCAATG	2 cut(s)	203, 839
BssMI	GATC	4 cut(s)	154, 324, 512, 703
Bst4CI	ACNGT	3 cut(s)	228, 486, 772
BstBI	TTCGAA	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	2 cut(s)	192, 647
BstF5I	GGATG	1 cut(s)	157
BstKTI	GATC	4 cut(s)	157, 327, 515, 706
BstMAI	GTCTC	3 cut(s)	398, 463, 779
BstMBI	GATC	4 cut(s)	154, 324, 512, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	809
BstV2I	GAAGAC	2 cut(s)	147, 621
BstXI	CCANNNNNNTGG	1 cut(s)	99
Bsu15I	ATCGAT	1 cut(s)	551
BsuTUI	ATCGAT	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	835
BveI	ACCTGC	1 cut(s)	914
Cac8I	GCNNGC	1 cut(s)	846
ClaI	ATCGAT	1 cut(s)	551
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	777
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	3 cut(s)	70, 577, 880
CviJI	RGCY	9 cut(s)	196, 335, 387, 433, 445, 586, 822, 848, 896
CviKI_1	RGCY	9 cut(s)	196, 335, 387, 433, 445, 586, 822, 848, 896
CviQI	GTAC	1 cut(s)	777
DdeI	CTNAG	2 cut(s)	192, 647
DpnI	GATC	4 cut(s)	156, 326, 514, 705
DpnII	GATC	4 cut(s)	154, 324, 512, 703
DrdI	GACNNNNNNGTC	1 cut(s)	86
DseDI	GACNNNNNNGTC	1 cut(s)	86
EciI	GGCGGA	3 cut(s)	240, 479, 490
Eco32I	GATATC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	292
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	3 cut(s)	73, 580, 883
FaqI	GGGAC	2 cut(s)	74, 506
FatI	CATG	3 cut(s)	69, 576, 879
FbaI	TGATCA	1 cut(s)	154
Fnu4HI	GCNGC	2 cut(s)	254, 823
FokI	GGATG	1 cut(s)	144
Fsp4HI	GCNGC	2 cut(s)	254, 823
FspBI	CTAG	2 cut(s)	557, 791
GluI	GCNGC	2 cut(s)	254, 823
HapII	CCGG	2 cut(s)	332, 752
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	3 cut(s)	73, 580, 883
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	7 cut(s)	66, 181, 245, 454, 498, 668, 787
HpaII	CCGG	2 cut(s)	332, 752
HphI	GGTGA	4 cut(s)	225, 354, 523, 878
Hpy188I	TCNGA	5 cut(s)	401, 512, 680, 892, 917
Hpy188III	TCNNGA	1 cut(s)	284
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	171, 338, 431, 456, 574
HpyCH4III	ACNGT	3 cut(s)	228, 486, 772
HpyCH4V	TGCA	3 cut(s)	566, 610, 844
HpyF10VI	GCNNNNNNNGC	1 cut(s)	393
HpyF3I	CTNAG	2 cut(s)	192, 647
Hsp92II	CATG	3 cut(s)	73, 580, 883
Ksp22I	TGATCA	1 cut(s)	154
Kzo9I	GATC	4 cut(s)	154, 324, 512, 703
LmnI	GCTCC	2 cut(s)	513, 583
LpnPI	CCDG	5 cut(s)	345, 518, 765, 830, 909
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	2 cut(s)	405, 553
MaeI	CTAG	2 cut(s)	557, 791
MaeIII	GTNAC	4 cut(s)	231, 422, 830, 883
MalI	GATC	4 cut(s)	156, 326, 514, 705
MbiI	CCGCTC	1 cut(s)	256
MboI	GATC	4 cut(s)	154, 324, 512, 703
MboII	GAAGA	8 cut(s)	122, 152, 156, 159, 162, 463, 626, 948
MfeI	CAATTG	1 cut(s)	20
MluCI	AATT	5 cut(s)	11, 20, 83, 186, 355
MlyI	GAGTC	2 cut(s)	492, 781
MseI	TTAA	4 cut(s)	57, 488, 600, 717
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	2 cut(s)	332, 752
MspR9I	CCNGG	1 cut(s)	753
MunI	CAATTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	4 cut(s)	154, 324, 512, 703
NlaIII	CATG	3 cut(s)	73, 580, 883
NmuCI	GTSAC	2 cut(s)	231, 830
NspV	TTCGAA	1 cut(s)	449
PaeR7I	CTCGAG	1 cut(s)	284
PfeI	GAWTC	5 cut(s)	66, 181, 245, 454, 668
PkrI	GCNGC	2 cut(s)	255, 824
PleI	GAGTC	2 cut(s)	492, 781
PpsI	GAGTC	2 cut(s)	492, 781
PsrI	GAACNNNNNNTAC	2 cut(s)	95, 127
RsaI	GTAC	1 cut(s)	778
RsaNI	GTAC	1 cut(s)	777
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	4 cut(s)	57, 488, 600, 717
SatI	GCNGC	2 cut(s)	254, 823
Sau3AI	GATC	4 cut(s)	154, 324, 512, 703
SchI	GAGTC	2 cut(s)	492, 781
ScrFI	CCNGG	1 cut(s)	753
SfaNI	GCATC	2 cut(s)	405, 553
SfcI	CTRYAG	1 cut(s)	944
Sfr274I	CTCGAG	1 cut(s)	284
SfuI	TTCGAA	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	284
SmiMI	CAYNNNNRTG	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	11, 20, 83, 186, 355
SsiI	CCGC	5 cut(s)	251, 254, 264, 464, 475
SspMI	CTAG	2 cut(s)	557, 791
StyD4I	CCNGG	1 cut(s)	751
TaaI	ACNGT	3 cut(s)	228, 486, 772
TaqI	TCGA	5 cut(s)	108, 270, 285, 449, 551
TaqII	GACCGA	1 cut(s)	510
TasI	AATT	5 cut(s)	11, 20, 83, 186, 355
TatI	WGTACW	1 cut(s)	776
TauI	GCSGC	1 cut(s)	256
TfiI	GAWTC	5 cut(s)	66, 181, 245, 454, 668
Tru1I	TTAA	4 cut(s)	57, 488, 600, 717
Tru9I	TTAA	4 cut(s)	57, 488, 600, 717
TscAI	CASTG	1 cut(s)	835
TseFI	GTSAC	2 cut(s)	231, 830
TseI	GCWGC	1 cut(s)	822
Tsp45I	GTSAC	2 cut(s)	231, 830
TspDTI	ATGAA	5 cut(s)	58, 194, 200, 379, 593
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	1 cut(s)	835
XhoI	CTCGAG	1 cut(s)	284
XspI	CTAG	2 cut(s)	557, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.