Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

21979090 .. 21980891

Gene Structure 1802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGAGCTTACTCAACATGGGTTCTTGGAGGAGCTACTAGCTCCAATTAGAAGAGAGAGTTGGAACACATACTCTTCTGGGTTTAATGAGTTCTTTCCTATGAATAATGGGTGGAGCTTTGATTCCAATTTTGAAGCGAACCCAGTTCTAGTTTCCTCATCAAACCCTGAATTTGGTGTGTTCTCCACCCAAACTGAGCCAACCTTTGAATGTCCATTACTCACTGAGCAGCAAGCCTCATCCTTCCCTTTTGTTGATGGAAGTGGGGTGCTCACAGTCCCAGCTGATATTGAATCCTCATACACCAACAACAATGACAGCAATACCCCTCCATTCCCACCCCAAGATCAAGACTACCCTTCAATGGTGGAGGATGAGGAGTTTGGAAATTTCCTTGGGAGTGAAAACCAGAGCAGCTGTTTGGAGTTGGAAGAGAGCAAGAACAGTACTTGCAAAGTTGAGACAGAGCAACAAGGCACTACTATCACTACAGATCATGGTGACATGCCTGTGGCTTTCAATATGGGATTGTGTGGTGGAAAGAGAAGCTGCAGCAGCAAGCCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCTATGCTCAGATCAATAGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGACTACATGAAAGAGCTTTTGGAAAGAATCAGCAAGTTGCAAGAAGAGAAAACTGAAGAGGGTACAAATCAGTTCAGCTTAATAGGCATCAACAAGGACCTAAACCCAAGTGAGGTCTTGGTGAGAAATTCCCCCAAGGTAAAATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

285

Amino Acids

32.07

Weight (kDa)

4.75

Isoelectric Point (pI)

69.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	200 - 242	5.2e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	634
AcsI	RAATTY	3 cut(s)	170, 388, 835
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	2 cut(s)	448, 772
AfeI	AGCGCT	1 cut(s)	623
AfiI	CCNNNNNNNGG	3 cut(s)	173, 364, 820
AgsI	TTSAA	7 cut(s)	134, 209, 293, 363, 520, 588, 628
AjuI	GAANNNNNNNTTGG	4 cut(s)	43, 75, 710, 742
AluBI	AGCT	9 cut(s)	7, 34, 41, 117, 284, 417, 549, 724, 786
AluI	AGCT	9 cut(s)	7, 34, 41, 117, 284, 417, 549, 724, 786
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	455, 693
Aor51HI	AGCGCT	1 cut(s)	623
ApeKI	GCWGC	6 cut(s)	229, 414, 549, 552, 555, 580
ApoI	RAATTY	3 cut(s)	170, 388, 835
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	805
AsuHPI	GGTGA	2 cut(s)	512, 841
AvaII	GGWCC	1 cut(s)	805
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	6 cut(s)	241, 426, 536, 564, 567, 592
BccI	CCATC	2 cut(s)	251, 670
BcoDI	GTCTC	2 cut(s)	455, 693
BfaI	CTAG	2 cut(s)	38, 149
BfmI	CTRYAG	2 cut(s)	489, 550
BfoI	RGCGCY	1 cut(s)	625
BisI	GCNGC	6 cut(s)	230, 415, 550, 553, 556, 581
BlsI	GCNGC	6 cut(s)	231, 416, 551, 554, 557, 582
BmcAI	AGTACT	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	805
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	804
BmuI	ACTGGG	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	394, 843
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 364, 820
Bse1I	ACTGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	394, 843
BseGI	GGATG	2 cut(s)	239, 379
BseLI	CCNNNNNNNGG	3 cut(s)	173, 364, 820
BseMII	CTCAG	3 cut(s)	186, 216, 661
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	44, 392
BseXI	GCAGC	6 cut(s)	241, 426, 536, 564, 567, 592
BseYI	CCCAGC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	273
BslFI	GGGAC	2 cut(s)	263, 644
BslI	CCNNNNNNNGG	3 cut(s)	173, 364, 820
BsmAI	GTCTC	2 cut(s)	455, 693
BsmFI	GGGAC	2 cut(s)	263, 644
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	346, 493, 650
BspACI	CCGC	1 cut(s)	634
BspCNI	CTCAG	3 cut(s)	187, 217, 660
BspMAI	CTGCAG	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	2 cut(s)	394, 843
BssMI	GATC	3 cut(s)	346, 493, 650
BssT1I	CCWWGG	2 cut(s)	394, 843
Bst4CI	ACNGT	2 cut(s)	277, 446
Bst6I	CTCTTC	5 cut(s)	46, 79, 426, 747, 759
BstC8I	GCNNGC	2 cut(s)	234, 560
BstDEI	CTNAG	4 cut(s)	195, 225, 564, 647
BstF5I	GGATG	2 cut(s)	239, 379
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	3 cut(s)	349, 496, 653
BstMAI	GTCTC	2 cut(s)	455, 693
BstMBI	GATC	3 cut(s)	346, 493, 650
BstMWI	GCNNNNNNNGC	2 cut(s)	555, 792
BstNSI	RCATGY	1 cut(s)	508
BstSFI	CTRYAG	2 cut(s)	489, 550
BstV1I	GCAGC	6 cut(s)	241, 426, 536, 564, 567, 592
BtsCI	GGATG	2 cut(s)	239, 379
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	2 cut(s)	234, 560
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	805
Csp6I	GTAC	2 cut(s)	447, 771
CviAII	CATG	4 cut(s)	17, 497, 505, 715
CviQI	GTAC	2 cut(s)	447, 771
DdeI	CTNAG	4 cut(s)	195, 225, 564, 647
DpnI	GATC	3 cut(s)	348, 495, 652
DpnII	GATC	3 cut(s)	346, 493, 650
Eam1104I	CTCTTC	5 cut(s)	46, 79, 426, 747, 759
EarI	CTCTTC	5 cut(s)	46, 79, 426, 747, 759
Eco130I	CCWWGG	2 cut(s)	394, 843
Eco47I	GGWCC	1 cut(s)	805
Eco47III	AGCGCT	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	783
EcoO109I	RGGNCCY	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	394, 843
ErhI	CCWWGG	2 cut(s)	394, 843
FaeI	CATG	4 cut(s)	20, 500, 508, 718
FaqI	GGGAC	2 cut(s)	263, 644
FatI	CATG	4 cut(s)	16, 496, 504, 714
Fnu4HI	GCNGC	6 cut(s)	230, 415, 550, 553, 556, 581
FokI	GGATG	2 cut(s)	226, 386
Fsp4HI	GCNGC	6 cut(s)	230, 415, 550, 553, 556, 581
FspBI	CTAG	2 cut(s)	38, 149
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	6 cut(s)	230, 415, 550, 553, 556, 581
GsaI	CCCAGC	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	625
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	4 cut(s)	20, 500, 508, 718
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	3 cut(s)	122, 293, 735
HphI	GGTGA	2 cut(s)	512, 841
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	1 cut(s)	350
HpyAV	CCTTC	5 cut(s)	253, 369, 569, 594, 609
HpyCH4III	ACNGT	2 cut(s)	277, 446
HpyCH4V	TGCA	3 cut(s)	453, 552, 748
HpyF10VI	GCNNNNNNNGC	2 cut(s)	555, 792
HpyF3I	CTNAG	4 cut(s)	195, 225, 564, 647
Hsp92II	CATG	4 cut(s)	20, 500, 508, 718
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	346, 493, 650
LmnI	GCTCC	4 cut(s)	4, 31, 46, 114
LpnPI	CCDG	6 cut(s)	63, 156, 180, 294, 422, 522
Lsp1109I	GCAGC	6 cut(s)	241, 426, 536, 564, 567, 592
LweI	GCATC	1 cut(s)	804
MaeI	CTAG	2 cut(s)	38, 149
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	348, 495, 652
MboI	GATC	3 cut(s)	346, 493, 650
MboII	GAAGA	7 cut(s)	63, 66, 443, 621, 624, 764, 776
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	5 cut(s)	45, 127, 170, 388, 835
MmeI	TCCRAC	2 cut(s)	41, 408
MnlI	CCTC	9 cut(s)	22, 166, 247, 307, 339, 364, 370, 760, 814
MseI	TTAA	2 cut(s)	84, 788
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	284, 417
MwoI	GCNNNNNNNGC	2 cut(s)	555, 792
NdeII	GATC	3 cut(s)	346, 493, 650
NlaIII	CATG	4 cut(s)	20, 500, 508, 718
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	122, 293, 735
PkrI	GCNGC	6 cut(s)	231, 416, 551, 554, 557, 582
PpuMI	RGGWCCY	1 cut(s)	805
Psp5II	RGGWCCY	1 cut(s)	805
PspFI	CCCAGC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	805
PspPPI	RGGWCCY	1 cut(s)	805
PstI	CTGCAG	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	284, 417
RsaI	GTAC	2 cut(s)	448, 772
RsaNI	GTAC	2 cut(s)	447, 771
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	84, 788
SatI	GCNGC	6 cut(s)	230, 415, 550, 553, 556, 581
Sau3AI	GATC	3 cut(s)	346, 493, 650
Sau96I	GGNCC	1 cut(s)	805
ScaI	AGTACT	1 cut(s)	448
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	804
SfcI	CTRYAG	2 cut(s)	489, 550
SinI	GGWCC	1 cut(s)	805
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	5 cut(s)	45, 127, 170, 388, 835
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	2 cut(s)	38, 149
StyI	CCWWGG	2 cut(s)	394, 843
TaaI	ACNGT	2 cut(s)	277, 446
TasI	AATT	5 cut(s)	45, 127, 170, 388, 835
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	122, 293, 735
Tru1I	TTAA	2 cut(s)	84, 788
Tru9I	TTAA	2 cut(s)	84, 788
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	6 cut(s)	229, 414, 549, 552, 555, 580
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	116, 731
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	805
XapI	RAATTY	3 cut(s)	170, 388, 835
XceI	RCATGY	1 cut(s)	508
XspI	CTAG	2 cut(s)	38, 149
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.