Rorug07G0279200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002347
Physical Location & Seq
Forward (+)
26894619 .. 26897210
2592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0279200.1

Sequence Viewer

Length: 2592 bp
ATGTCCGGTGAGGCGCGTTGCCTTCACCCTTCTCTCAAGGTACACTATTATCACACTCTCAACTCCTCCCGACCCACCTCTGGTTTTCACAGCAGCTTTGATTATCTCACTCAGTTCTTGCCTTTCTCTTCTAACAAACCCAATTCCAAATCCTCTATAAACTCCAATGAGCGGCGTAAAGTCACTGTTGGGTTATCCAGGATCATAAAGAACCAACAGGGCTATGTACTGAAGGGCTTTTCCAGAACCTTCTGCCCATTTTTTCTTGTAAAGATTATGAAACTGTTCTGTTGTAGAGAAACTGCATTTGGGTTCTTTAAACTAGCCTTTAGGGATGATAATCAGCAGACTGTGGAGTCATGTTGTGTGGCTGCACATGTTTTGGCGGCCGAAAATCTACGGTTTCTGGCTCAAGATGTGGTTTCGTGTGTGATTGGGAGGATTGGGCCGAGTAGGAGTAGGGATTTGGTGGGGTTTATGTGGGGAGGGCATTGTGAATACGAGTCGGATTTTTCGGTTCTTGATACACTAATGAGGGGGTTCTTGAATGCGGAAATGGGCGCCGAGGCTTTGGAGGTTTTGAGGAGGATGAGGGAGGTGGGAGTGAGGCCGAGTTTGTCAGCGGTTGCGATTCTGTTCAGGTTGTTGATAAGGGTTGGCGATTATGGTAGTGTGTGGAAGGTGTTTAGGGATATGATTAGAGAAGGGCCTTATCCATGTAATTATGTTTTTAGTGCAATGATTCTTGGGTTTTGTCGAAAAGGGTTGGTTAGAGTTGGGGAGAGTTTGTTACAGGTGATGTGGAAATTCCAATGTGAACCGGATGTTTTTGCTTATAACATTGTGATCTATGCAAATTGTGCGAGAGGGCAGACGGCTGATGCGCTGGAATGGGTGGAGTTGATGATTGCAAGGGGATGTAAACCGAGCATTGTTACATTTAATACAGTCATAAGTGCATTGTGTAAGGAAGGAAATGTGGTGGAGGCAAGGAAGCTTTTTGATGATGTCCCAGACGTGGGTGTTTATCCGAATACCATAATGTACAATACCATGATGGATGGGTATGTTAAGGCAAGGGAGATTGGTCAGGCTAACATGCTTTTTGAAGAAATGAGAAACAAGAGCATTTCTCCAGATGGCATAACTTTCAATATCTTGATTGGAGGGCATTACAAGTATGGAAGCGAAGATGATGGAGACAGGTTGTTGCGGGATTTATCTGTGTCAGGATTACTTCCAGATTCTTCATTGTATGATATCTATGTTTCTGTGTTGTGTTGGGCAGATCGGTTGGACGATGCCATGGCAGTTTTAGAGGATATGCTTGAAAGAGGATTGCCTCTAAGTGTGGTCGCTTTCAACTCTGTTATTGCAGCTTGTAGCAGAGTAGGTTTGGAAGAAAAAGCATATAAGACCTTTAACTTCATGATTTCATTTGGTATAACTCCTTCATCTTCTACGTGTAGTTCTTTGCTTATGGGTTTATCTAAGAAGGGTTACTTGCAAGAAGCCAGAGAGCTTTTGTGTAAAATGATGGAGAAGGGGTTTCCTATCAGAAAAGCTGCTTTTACGGTGCTTTTGGATGGGTACTTTAGGATGGGTGATTTAGATGGGGCACAAAGTTTGTGGAATGAGATGGAAGGAAGAGGCATATCTCCTGATGTTGTTGCCTTTTCAGCATTTATCAATGGACTATCTAAAGCCGGTTTAATGGAAGAAGCATATGATATGTTTCAAGAAATGTCAAGAAGAGGGTTTGTGCTCAATAATTTTGTCTATAATTCTTTGATTGGTGGCTTTTGCTACTGTGGTAAGTTGAGTGATGCACTGAGGTTGGAGAGAGAGATGAGGCAAAGGGGTCTTATTCCGGATATTTTTACCACCAATATGATCATTCATGGGTTCTGTAGACAGGGGAGGATGAAGTCAGCAATTAATACATTTATGAACATGTTCCAAACTGGGTTAACCCCAGATATCATCACTTACAATACATTAATTGGTGGTTATTGTAAAGCATTTGACATGGTTAGGGCAGATGAATTTTTGTATAAAATGTACGCTAGCGGATGGGAACCAGATATCACAACCTATAATATACGGATGCATGGTTTTTGTAGTAGCCGAAAGATAAATCGAGCTGTGATGATTCTGGATGAGCTTGTATCGAGAGGTGTTGTTCCAGACACAGTAACATACAACACTATGATGAATGGTGTTTGTGTTGACATACTGGATCGTGCTATGATTTTAACCGCTAAATTGCTTAAGTTGGCGTTTCTTCCAAATGTTGTTACAGCTAATGTATTGTTGTCTCAGTTCCGCAGGCAGGGGATGCCTGAGAAGGCCCTAATGTGGGGTCAGAAGTTGAGTCAGTTTTCCTTTTGTTTTGATGAAATTACCTACAAAATATTGGACAGAGCCTATCACAATATGCAAGAAGATCCTGCAATTCCAAGTGCAACACCTGAGAAAAGCCTCTTCTTGGATTTCCTCATGTACATTACGTATGATTATTTATGTAAAAATAAACCTTGCAGAGATGTAAGACAAAACCCTCTTAAAGTAATTGGTCTTAGTGGCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

863

Amino Acids

97.47

Weight (kDa)

8.23

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 239 - 287 2.1e-06 PPR repeat family
PPR_3 PF13812 264 - 321 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 274 - 323 1.3e-12 PPR repeat family
PPR_1 PF12854 305 - 336 7.8e-12 PPR repeat
PPR_2 PF13041 309 - 346 9.7e-09 PPR repeat family
PPR PF01535 312 - 339 2.4e-06 PPR repeat
PPR_3 PF13812 332 - 389 3.6e-09 Pentatricopeptide repeat domain
PPR_2 PF13041 344 - 392 3e-15 PPR repeat family
PPR PF01535 347 - 376 7.7e-06 PPR repeat
PPR_long PF17177 432 - 582 1.7e-10 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 435 - 546 2.4e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 450 - 498 5e-08 PPR repeat family
PPR_2 PF13041 523 - 568 1.9e-11 PPR repeat family
PPR_1 PF12854 550 - 583 6.6e-09 PPR repeat
PPR_2 PF13041 554 - 602 1.3e-13 PPR repeat family
PPR PF01535 557 - 587 2.4e-07 PPR repeat
PPR_3 PF13812 578 - 633 4.1e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 585 - 618 9.3e-08 PPR repeat
PPR_2 PF13041 590 - 638 3.4e-13 PPR repeat family
PPR PF01535 593 - 622 7.4e-06 PPR repeat
PPR_3 PF13812 613 - 671 1.3e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 620 - 649 7.4e-07 PPR repeat
PPR_2 PF13041 624 - 673 6e-16 PPR repeat family
PPR_1 PF12854 656 - 687 2e-07 PPR repeat
PPR_2 PF13041 659 - 707 3.2e-13 PPR repeat family
PPR_2 PF13041 694 - 742 2.5e-14 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 837
AasI GACNNNNNNGTC 1 cut(s) 355
AccB1I GGYRCC 1 cut(s) 560
AccBSI CCGCTC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 1912
AccII CGCG 1 cut(s) 16
AccIII TCCGGA 1 cut(s) 1870
AciI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
AclWI GGATC 3 cut(s) 209, 2247, 2441
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 806, 2045
AcuI CTGAAG 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 6 cut(s) 42, 228, 1046, 1592, 2063, 2504
AfiI CCNNNNNNNGG 8 cut(s) 80, 171, 1018, 1019, 2332, 2358, 2359, 2488
AflII CTTAAG 1 cut(s) 2270
AflIII ACRYGT 3 cut(s) 376, 1463, 1953
AgsI TTSAA 6 cut(s) 547, 1109, 1153, 1331, 1363, 1739
AjiI CACGTC 1 cut(s) 1018
AjnI CCWGG 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 8 cut(s) 96, 997, 1379, 1522, 1565, 2144, 2164, 2303
AluI AGCT 8 cut(s) 96, 997, 1379, 1522, 1565, 2144, 2164, 2303
Alw21I GWGCWC 1 cut(s) 1767
Alw26I GTCTC 2 cut(s) 1194, 2322
AlwI GGATC 3 cut(s) 209, 2247, 2441
Aor13HI TCCGGA 1 cut(s) 1870
AoxI GGCC 6 cut(s) 387, 446, 608, 707, 2349, 2584
ApeKI GCWGC 4 cut(s) 93, 371, 1376, 1565
ApoI RAATTY 2 cut(s) 806, 2045
AseI ATTAAT 2 cut(s) 1938, 2000
Asp700I GAANNNNTTC 2 cut(s) 284, 1955
AspLEI GCGC 3 cut(s) 16, 563, 886
AspS9I GGNCC 4 cut(s) 446, 707, 2350, 2585
AsuHPI GGTGA 4 cut(s) 17, 20, 808, 1616
AsuNHI GCTAGC 1 cut(s) 2066
BaeGI GKGCMC 1 cut(s) 1621
BanI GGYRCC 1 cut(s) 560
BarI GAAGNNNNNNTAC 2 cut(s) 1435, 1467
Bbv12I GWGCWC 1 cut(s) 1767
BbvI GCAGC 4 cut(s) 105, 358, 1388, 1552
BceAI ACGGC 1 cut(s) 891
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 1 cut(s) 1893
BcoDI GTCTC 2 cut(s) 1194, 2322
BfaI CTAG 2 cut(s) 323, 2067
BfmI CTRYAG 1 cut(s) 1909
BfoI RGCGCY 1 cut(s) 564
BfrI CTTAAG 1 cut(s) 2270
BisI GCNGC 6 cut(s) 94, 173, 372, 387, 1377, 1566
BlsI GCNGC 6 cut(s) 95, 174, 373, 388, 1378, 1567
Bme1390I CCNGG 1 cut(s) 199
BmgBI CACGTC 1 cut(s) 1018
BmgT120I GGNCC 4 cut(s) 446, 707, 2350, 2585
BmiI GGNNCC 3 cut(s) 562, 2079, 2587
BmrFI CCNGG 1 cut(s) 199
BmrI ACTGGG 1 cut(s) 1974
BmsI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
BmtI GCTAGC 1 cut(s) 2070
BmuI ACTGGG 1 cut(s) 1974
BplI GAGNNNNNCTC 2 cut(s) 1117, 1149
BpmI CTGGAG 1 cut(s) 1119
BpuEI CTTGAG 2 cut(s) 20, 396
BsaAI YACGTR 2 cut(s) 1464, 2511
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 564, 1305
BsaWI WCCGGW 3 cut(s) 5, 820, 1870
BsaXI ACNNNNNCTCC 4 cut(s) 773, 803, 1532, 1562
Bsc4I CCNNNNNNNGG 8 cut(s) 80, 171, 1018, 1019, 2332, 2358, 2359, 2488
Bse118I RCCGGY 1 cut(s) 1706
Bse1I ACTGG 2 cut(s) 1969, 2241
Bse3DI GCAATG 1 cut(s) 744
Bse8I GATNNNNATC 1 cut(s) 339
BseAI TCCGGA 1 cut(s) 1870
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 564, 1305
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 8 cut(s) 80, 171, 1018, 1019, 2332, 2358, 2359, 2488
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 5 cut(s) 125, 1823, 2333, 2334, 2463
BseNI ACTGG 2 cut(s) 1969, 2241
BseRI GAGGAG 2 cut(s) 55, 598
BseSI GKGCMC 1 cut(s) 1621
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 4 cut(s) 105, 358, 1388, 1552
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 390
BshFI GGCC 6 cut(s) 389, 448, 610, 709, 2351, 2586
BshNI GGYRCC 1 cut(s) 560
BsiEI CGRYCG 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 1767
BsiSI CCGG 4 cut(s) 6, 821, 1707, 1871
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 8 cut(s) 80, 171, 1018, 1019, 2332, 2358, 2359, 2488
BsmAI GTCTC 2 cut(s) 1194, 2322
BsmFI GGGAC 1 cut(s) 995
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 6 cut(s) 389, 448, 610, 709, 2351, 2586
Bsp1286I GDGCHC 2 cut(s) 1621, 1767
Bsp13I TCCGGA 1 cut(s) 1870
Bsp1407I TGTACA 2 cut(s) 1044, 2502
Bsp143I GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Bsp19I CCATGG 1 cut(s) 1305
BspACI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
BspANI GGCC 6 cut(s) 389, 448, 610, 709, 2351, 2586
BspCNI CTCAG 5 cut(s) 124, 1824, 2332, 2335, 2464
BspEI TCCGGA 1 cut(s) 1870
BspFNI CGCG 1 cut(s) 16
BspHI TCATGA 1 cut(s) 1428
BspLI GGNNCC 3 cut(s) 562, 2079, 2587
BspOI GCTAGC 1 cut(s) 2070
BspPI GGATC 3 cut(s) 209, 2247, 2441
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 2270
BsrBI CCGCTC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 744
BsrFI RCCGGY 1 cut(s) 1706
BsrGI TGTACA 2 cut(s) 1044, 2502
BsrI ACTGG 2 cut(s) 1969, 2241
BssAI RCCGGY 1 cut(s) 1706
BssECI CCNNGG 2 cut(s) 564, 1305
BssMI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
BssNI GRCGYC 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 1305
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 8 cut(s) 187, 285, 352, 402, 949, 1576, 1811, 2194
Bst6I CTCTTC 4 cut(s) 133, 1642, 1747, 2489
BstACI GRCGYC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 2270
BstAPI GCANNNNNTGC 2 cut(s) 860, 2338
BstAUI TGTACA 2 cut(s) 1044, 2502
BstBAI YACGTR 2 cut(s) 1464, 2511
BstC8I GCNNGC 2 cut(s) 2068, 2330
BstDEI CTNAG 8 cut(s) 111, 1346, 1491, 1832, 2319, 2343, 2472, 2579
BstDSI CCRYGG 1 cut(s) 1305
BstFNI CGCG 1 cut(s) 16
BstH2I RGCGCY 1 cut(s) 564
BstHHI GCGC 3 cut(s) 16, 563, 886
BstKTI GATC 6 cut(s) 204, 849, 1291, 1896, 2242, 2449
BstMAI GTCTC 2 cut(s) 1194, 2322
BstMBI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
BstMCI CGRYCG 1 cut(s) 390
BstMWI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 3 cut(s) 380, 1102, 1957
BstSCI CCNGG 1 cut(s) 197
BstSFI CTRYAG 1 cut(s) 1909
BstSLI GKGCMC 1 cut(s) 1621
BstSNI TACGTA 1 cut(s) 2511
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 105, 358, 1388, 1552
BstX2I RGATCY 1 cut(s) 2446
BstYI RGATCY 1 cut(s) 2446
BstZI CGGCCG 1 cut(s) 387
BsuRI GGCC 6 cut(s) 389, 448, 610, 709, 2351, 2586
BtgI CCRYGG 1 cut(s) 1305
BtrI CACGTC 1 cut(s) 1018
BtsIMutI CAGTG 2 cut(s) 183, 1829
Cac8I GCNNGC 2 cut(s) 2068, 2330
CciI TCATGA 1 cut(s) 1428
CfoI GCGC 3 cut(s) 16, 563, 886
Cfr10I RCCGGY 1 cut(s) 1706
Cfr13I GGNCC 4 cut(s) 446, 707, 2350, 2585
Csp6I GTAC 6 cut(s) 41, 227, 1045, 1591, 2062, 2503
CspCI CAANNNNNGTGG 2 cut(s) 1610, 1645
CviQI GTAC 6 cut(s) 41, 227, 1045, 1591, 2062, 2503
DdeI CTNAG 8 cut(s) 111, 1346, 1491, 1832, 2319, 2343, 2472, 2579
DinI GGCGCC 1 cut(s) 562
DpnI GATC 6 cut(s) 203, 848, 1290, 1895, 2241, 2448
DpnII GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
DraI TTTAAA 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 355
DseDI GACNNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 387
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 4 cut(s) 133, 1642, 1747, 2489
EarI CTCTTC 4 cut(s) 133, 1642, 1747, 2489
EclXI CGGCCG 1 cut(s) 387
Eco105I TACGTA 1 cut(s) 2511
Eco130I CCWWGG 1 cut(s) 1305
Eco32I GATATC 3 cut(s) 1261, 1981, 2086
Eco52I CGGCCG 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 707, 2350
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 3 cut(s) 1261, 1981, 2086
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 2112
EgeI GGCGCC 1 cut(s) 562
EheI GGCGCC 1 cut(s) 562
ErhI CCWWGG 1 cut(s) 1305
FalI AAGNNNNNCTT 2 cut(s) 1487, 1519
FaqI GGGAC 1 cut(s) 995
FauI CCCGC 1 cut(s) 1206
FauNDI CATATG 1 cut(s) 1726
FbaI TGATCA 1 cut(s) 1893
FblI GTMKAC 1 cut(s) 1912
Fnu4HI GCNGC 6 cut(s) 94, 173, 372, 387, 1377, 1566
Fsp4HI GCNGC 6 cut(s) 94, 173, 372, 387, 1377, 1566
FspBI CTAG 2 cut(s) 323, 2067
GlaI GCGC 3 cut(s) 15, 562, 885
GluI GCNGC 6 cut(s) 94, 173, 372, 387, 1377, 1566
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 564
HaeIII GGCC 6 cut(s) 389, 448, 610, 709, 2351, 2586
HapII CCGG 4 cut(s) 6, 821, 1707, 1871
HhaI GCGC 3 cut(s) 16, 563, 886
Hin1I GRCGYC 1 cut(s) 561
Hin6I GCGC 3 cut(s) 14, 561, 884
HinP1I GCGC 3 cut(s) 14, 561, 884
HincII GTYRAC 2 cut(s) 1971, 2230
HindII GTYRAC 2 cut(s) 1971, 2230
HindIII AAGCTT 1 cut(s) 995
HinfI GANTC 7 cut(s) 356, 503, 631, 742, 1244, 2152, 2374
HpaI GTTAAC 1 cut(s) 1971
HpaII CCGG 4 cut(s) 6, 821, 1707, 1871
HphI GGTGA 4 cut(s) 17, 20, 808, 1616
Hpy166II GTNNAC 6 cut(s) 43, 818, 923, 1913, 1971, 2230
Hpy188I TCNGA 4 cut(s) 508, 1032, 1559, 2367
Hpy8I GTNNAC 6 cut(s) 43, 818, 923, 1913, 1971, 2230
HpyCH4III ACNGT 8 cut(s) 187, 285, 352, 402, 949, 1576, 1811, 2194
HpyCH4IV ACGT 3 cut(s) 1017, 1463, 2510
HpyF10VI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
HpyF3I CTNAG 8 cut(s) 111, 1346, 1491, 1832, 2319, 2343, 2472, 2579
HpySE526I ACGT 3 cut(s) 1017, 1463, 2510
Hsp92I GRCGYC 1 cut(s) 561
HspAI GCGC 3 cut(s) 14, 561, 884
KasI GGCGCC 1 cut(s) 560
Kpn2I TCCGGA 1 cut(s) 1870
Ksp22I TGATCA 1 cut(s) 1893
KspAI GTTAAC 1 cut(s) 1971
Kzo9I GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Lsp1109I GCAGC 4 cut(s) 105, 358, 1388, 1552
LweI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
MaeI CTAG 2 cut(s) 323, 2067
MaeII ACGT 3 cut(s) 1017, 1463, 2510
MaeIII GTNAC 6 cut(s) 181, 789, 934, 1499, 2194, 2296
MalI GATC 6 cut(s) 203, 848, 1290, 1895, 2241, 2448
MbiI CCGCTC 1 cut(s) 172
MboI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
MflI RGATCY 1 cut(s) 2446
MhlI GDGCHC 2 cut(s) 1621, 1767
Mly113I GGCGCC 1 cut(s) 561
MlyI GAGTC 3 cut(s) 365, 512, 2383
MmeI TCCRAC 3 cut(s) 486, 1275, 1818
Mph1103I ATGCAT 1 cut(s) 2112
MroI TCCGGA 1 cut(s) 1870
MroXI GAANNNNTTC 2 cut(s) 284, 1955
MslI CAYNNNNRTG 2 cut(s) 1889, 2210
MspA1I CMGCKG 1 cut(s) 623
MspCI CTTAAG 1 cut(s) 2270
MspI CCGG 4 cut(s) 6, 821, 1707, 1871
MspR9I CCNGG 1 cut(s) 199
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 3 cut(s) 860, 1679, 2338
NarI GGCGCC 1 cut(s) 561
NcoI CCATGG 1 cut(s) 1305
NdeI CATATG 1 cut(s) 1726
NdeII GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
NheI GCTAGC 1 cut(s) 2066
NlaIV GGNNCC 3 cut(s) 562, 2079, 2587
NmeAIII GCCGAG 3 cut(s) 474, 589, 636
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 2112
NspI RCATGY 3 cut(s) 380, 1102, 1957
PagI TCATGA 1 cut(s) 1428
PciI ACATGT 2 cut(s) 376, 1953
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 2 cut(s) 284, 1955
PfeI GAWTC 4 cut(s) 631, 742, 1244, 2152
PfoI TCCNGGA 1 cut(s) 197
PkrI GCNGC 6 cut(s) 95, 174, 373, 388, 1378, 1567
PleI GAGTC 3 cut(s) 364, 511, 2382
PluTI GGCGCC 1 cut(s) 564
PpsI GAGTC 3 cut(s) 364, 511, 2382
Ppu21I YACGTR 2 cut(s) 1464, 2511
PscI ACATGT 2 cut(s) 376, 1953
PshBI ATTAAT 2 cut(s) 1938, 2000
PsiI TTATAA 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 3 cut(s) 562, 2079, 2587
PspPI GGNCC 4 cut(s) 446, 707, 2350, 2585
PsuI RGATCY 1 cut(s) 2446
RsaI GTAC 6 cut(s) 42, 228, 1046, 1592, 2063, 2504
RsaNI GTAC 6 cut(s) 41, 227, 1045, 1591, 2062, 2503
RseI CAYNNNNRTG 2 cut(s) 1889, 2210
SatI GCNGC 6 cut(s) 94, 173, 372, 387, 1377, 1566
Sau3AI GATC 6 cut(s) 201, 846, 1288, 1893, 2239, 2446
Sau96I GGNCC 4 cut(s) 446, 707, 2350, 2585
SchI GAGTC 3 cut(s) 365, 512, 2383
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 2 cut(s) 1621, 1767
SfaNI GCATC 5 cut(s) 871, 1291, 1816, 2097, 2328
SfcI CTRYAG 1 cut(s) 1909
SfoI GGCGCC 1 cut(s) 562
SmiMI CAYNNNNRTG 2 cut(s) 1889, 2210
SmlI CTYRAG 3 cut(s) 35, 411, 2270
SmoI CTYRAG 3 cut(s) 35, 411, 2270
SnaBI TACGTA 1 cut(s) 2511
SsiI CCGC 8 cut(s) 172, 386, 551, 623, 1213, 2070, 2259, 2326
SspDI GGCGCC 1 cut(s) 560
SspI AATATT 1 cut(s) 2415
SspMI CTAG 2 cut(s) 323, 2067
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 1 cut(s) 1305
TaaI ACNGT 8 cut(s) 187, 285, 352, 402, 949, 1576, 1811, 2194
TaiI ACGT 3 cut(s) 1020, 1466, 2513
TaqI TCGA 3 cut(s) 757, 2140, 2171
TatI WGTACW 3 cut(s) 226, 1044, 2502
TauI GCSGC 2 cut(s) 175, 389
TfiI GAWTC 4 cut(s) 631, 742, 1244, 2152
TscAI CASTG 2 cut(s) 190, 1836
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 4 cut(s) 93, 371, 1376, 1565
Tsp45I GTSAC 1 cut(s) 181
TspGWI ACGGA 1 cut(s) 2119
TspRI CASTG 2 cut(s) 190, 1836
Vha464I CTTAAG 1 cut(s) 2270
VspI ATTAAT 2 cut(s) 1938, 2000
XapI RAATTY 2 cut(s) 806, 2045
XceI RCATGY 3 cut(s) 380, 1102, 1957
XmiI GTMKAC 1 cut(s) 1912
XmnI GAANNNNTTC 2 cut(s) 284, 1955
XspI CTAG 2 cut(s) 323, 2067
Zsp2I ATGCAT 1 cut(s) 2112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.