Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

26236964 .. 26239219

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G65640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAACTGTCGACTCAAATGAATGTGTTCGAAGAGCTTCTTGTTCCGACAAAGCAAGAAACAACCGACAACAACATCAACAATCTGAGCTTTAATGGCGGATTTGATCATCATCATCATCAATTCTTCCCAAATGGATATAATATTGATTACCTCTGTTTCAACAATGAAGAAGAAGACGAAAATACCCTTTTGTATCCTTCTTCTTTCATGGATCTAATCTCTCAACCTCCTCCATTGCTTCTTCACCAACCGCCACCGTTACAACCACTGTCGCCGCCGTTATCCTCCTCCGCGACCGCCGGAGCAACATTTGACTACCCTTTTCTTGAGGCTTTGCAAGAGATAATTGACTCTTCTTCCTCATCGCCTCCATTGATCCTTCAAAATGGTCAAGAAGAGAACTTTAATAATCCGATGTCGTATCCCTCTCCATTGATGGAGTCTGATCAGAGCAAGAGCTTCAGTGTTGGTTACTGTGGAGGAGAGACGAACAAGAAGAAGAGCAAAAAGCTTGAAGGCCAACCTTCTAAGAATCTCATGGCGGAGAGACGACGGAGAAAACGACTTAACGATCGTCTTTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGATGGACAGGACATCGATATTAGGAGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGAACAAGAACTTGGAAATAGCAACAATTCACATCACTCTAAGCTCTTCGGTGATCTCAAGGATCTTAATGCGAACGAACCTCTGGTCAGAAACTCACCAAAGTTTGAAATAGATCGTAGAGACGAGGATACTCGAGTTGATATATGCTGCTCGCCAAAACCGGGATTGCTACTATCTACTGTGAATACATTAGAGACTCTAGGCTTGGAGATTGAACAATGTGTTATAAGCTGCTTTAGTGATTTCTCTTTGCAGGCTTCTTGTTCTGAGGGAGCTGAGCAGAGAGATTTCATAACATCAGAAGATATAAAACAAGCATTATTCAGAAACGCAGGTTATGGTGGAAGCTGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

351

Amino Acids

39.48

Weight (kDa)

4.8

Isoelectric Point (pI)

68.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	180 - 228	3.8e-06	Transcription factor SAC51 bHLH domain
HLH	PF00010	181 - 223	2.1e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
Acc36I	ACCTGC	1 cut(s)	1022
AccI	GTMKAC	1 cut(s)	11
AccII	CGCG	1 cut(s)	296
AciI	CCGC	6 cut(s)	99, 254, 278, 294, 300, 545
AclWI	GGATC	4 cut(s)	222, 373, 588, 768
AcuI	CTGAAG	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	5 cut(s)	163, 386, 518, 806, 914
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AluBI	AGCT	9 cut(s)	37, 90, 462, 514, 667, 742, 930, 974, 1047
AluI	AGCT	9 cut(s)	37, 90, 462, 514, 667, 742, 930, 974, 1047
Alw26I	GTCTC	4 cut(s)	482, 544, 813, 887
AlwI	GGATC	4 cut(s)	222, 373, 588, 768
Ama87I	CYCGRG	1 cut(s)	831
AoxI	GGCC	1 cut(s)	520
ApeKI	GCWGC	3 cut(s)	846, 930, 1047
ArsI	GACNNNNNNTTYG	2 cut(s)	768, 800
Asp700I	GAANNNNTTC	2 cut(s)	26, 36
AsuC2I	CCSGG	1 cut(s)	861
AsuHPI	GGTGA	3 cut(s)	239, 761, 786
AsuII	TTCGAA	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	831
BaeI	ACNNNNGTAYC	2 cut(s)	819, 852
BbsI	GAAGAC	1 cut(s)	183
BbvI	GCAGC	3 cut(s)	833, 917, 1034
BccI	CCATC	3 cut(s)	433, 605, 613
BceAI	ACGGC	1 cut(s)	265
BciVI	GTATCC	3 cut(s)	207, 435, 820
BclI	TGATCA	2 cut(s)	106, 448
BcnI	CCSGG	1 cut(s)	861
BcoDI	GTCTC	4 cut(s)	482, 544, 813, 887
BfaI	CTAG	1 cut(s)	899
BfuAI	ACCTGC	1 cut(s)	1022
BfuI	GTATCC	3 cut(s)	207, 435, 820
BisI	GCNGC	4 cut(s)	278, 847, 931, 1048
BlpI	GCTNAGC	1 cut(s)	975
BlsI	GCNGC	4 cut(s)	279, 848, 932, 1049
Bme1390I	CCNGG	1 cut(s)	861
BmeT110I	CYCGRG	1 cut(s)	831
BmrFI	CCNGG	1 cut(s)	861
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	183
Bpu1102I	GCTNAGC	1 cut(s)	975
Bpu14I	TTCGAA	1 cut(s)	30
BpuEI	CTTGAG	2 cut(s)	350, 740
BpuMI	CCSGG	1 cut(s)	861
Bsa29I	ATCGAT	1 cut(s)	632
BsaBI	GATNNNNATC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse3DI	GCAATG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	632
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMI	GCAATG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	77, 957, 966
BseRI	GAGGAG	3 cut(s)	222, 280, 498
BseXI	GCAGC	3 cut(s)	833, 917, 1034
Bsh1236I	CGCG	1 cut(s)	296
Bsh1285I	CGRYCG	2 cut(s)	300, 577
BshFI	GGCC	1 cut(s)	522
BshVI	ATCGAT	1 cut(s)	632
BsiEI	CGRYCG	2 cut(s)	300, 577
BsiHKCI	CYCGRG	1 cut(s)	831
BsiSI	CCGG	2 cut(s)	303, 860
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmAI	GTCTC	4 cut(s)	482, 544, 813, 887
BsmBI	CGTCTC	3 cut(s)	482, 544, 813
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	522
BsoBI	CYCGRG	1 cut(s)	831
Bsp119I	TTCGAA	1 cut(s)	30
Bsp143I	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
Bsp1720I	GCTNAGC	1 cut(s)	975
BspACI	CCGC	6 cut(s)	99, 254, 278, 294, 300, 545
BspANI	GGCC	1 cut(s)	522
BspCNI	CTCAG	3 cut(s)	78, 958, 967
BspDI	ATCGAT	1 cut(s)	632
BspFNI	CGCG	1 cut(s)	296
BspMI	ACCTGC	1 cut(s)	1022
BspPI	GGATC	4 cut(s)	222, 373, 588, 768
BspQI	GCTCTTC	3 cut(s)	27, 497, 749
BspT104I	TTCGAA	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	236
BssMI	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
Bst4CI	ACNGT	5 cut(s)	9, 261, 273, 479, 880
Bst6I	CTCTTC	5 cut(s)	27, 361, 393, 497, 749
BstBI	TTCGAA	1 cut(s)	30
BstC8I	GCNNGC	2 cut(s)	851, 954
BstDEI	CTNAG	5 cut(s)	86, 531, 738, 966, 975
BstFNI	CGCG	1 cut(s)	296
BstKTI	GATC	9 cut(s)	109, 217, 381, 451, 577, 596, 754, 763, 814
BstMAI	GTCTC	4 cut(s)	482, 544, 813, 887
BstMBI	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
BstMCI	CGRYCG	2 cut(s)	300, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	296
BstV1I	GCAGC	3 cut(s)	833, 917, 1034
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	2 cut(s)	214, 760
BstYI	RGATCY	2 cut(s)	214, 760
Bsu15I	ATCGAT	1 cut(s)	632
BsuI	GTATCC	3 cut(s)	207, 435, 820
BsuRI	GGCC	1 cut(s)	522
BsuTUI	ATCGAT	1 cut(s)	632
BtgZI	GCGATG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	269, 472
BveI	ACCTGC	1 cut(s)	1022
Cac8I	GCNNGC	2 cut(s)	851, 954
ClaI	ATCGAT	1 cut(s)	632
CviAII	CATG	3 cut(s)	211, 541, 658
DdeI	CTNAG	5 cut(s)	86, 531, 738, 966, 975
DpnI	GATC	9 cut(s)	108, 216, 380, 450, 576, 595, 753, 762, 813
DpnII	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
Eam1104I	CTCTTC	5 cut(s)	27, 361, 393, 497, 749
EarI	CTCTTC	5 cut(s)	27, 361, 393, 497, 749
EciI	GGCGGA	2 cut(s)	114, 560
Eco57I	CTGAAG	1 cut(s)	448
Eco88I	CYCGRG	1 cut(s)	831
Esp3I	CGTCTC	3 cut(s)	482, 544, 813
FaeI	CATG	3 cut(s)	214, 544, 661
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	3 cut(s)	210, 540, 657
FbaI	TGATCA	2 cut(s)	106, 448
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	4 cut(s)	278, 847, 931, 1048
Fsp4HI	GCNGC	4 cut(s)	278, 847, 931, 1048
FspBI	CTAG	1 cut(s)	899
GluI	GCNGC	4 cut(s)	278, 847, 931, 1048
HaeIII	GGCC	1 cut(s)	522
HapII	CCGG	2 cut(s)	303, 860
Hin1II	CATG	3 cut(s)	214, 544, 661
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	512
HinfI	GANTC	5 cut(s)	13, 353, 443, 535, 895
HpaII	CCGG	2 cut(s)	303, 860
HphI	GGTGA	3 cut(s)	239, 761, 786
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	329, 395
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	558
HpyAV	CCTTC	4 cut(s)	210, 392, 512, 537
HpyCH4III	ACNGT	5 cut(s)	9, 261, 273, 479, 880
HpyCH4V	TGCA	2 cut(s)	340, 952
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	5 cut(s)	86, 531, 738, 966, 975
Hsp92II	CATG	3 cut(s)	214, 544, 661
Ksp22I	TGATCA	2 cut(s)	106, 448
Kzo9I	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
LguI	GCTCTTC	3 cut(s)	27, 497, 749
LmnI	GCTCC	3 cut(s)	305, 594, 971
LpnPI	CCDG	6 cut(s)	316, 610, 767, 873, 938, 1017
Lsp1109I	GCAGC	3 cut(s)	833, 917, 1034
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	899
MaeIII	GTNAC	2 cut(s)	261, 473
MalI	GATC	9 cut(s)	108, 216, 380, 450, 576, 595, 753, 762, 813
MboI	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
MflI	RGATCY	2 cut(s)	214, 760
MluCI	AATT	4 cut(s)	122, 348, 686, 724
MlyI	GAGTC	4 cut(s)	7, 347, 452, 889
MmeI	TCCRAC	1 cut(s)	71
MroXI	GAANNNNTTC	2 cut(s)	26, 36
MseI	TTAA	4 cut(s)	93, 408, 570, 765
MspI	CCGG	2 cut(s)	303, 860
MspR9I	CCNGG	1 cut(s)	861
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	861
NdeII	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
NlaIII	CATG	3 cut(s)	214, 544, 661
NspV	TTCGAA	1 cut(s)	30
PaeR7I	CTCGAG	1 cut(s)	831
PciSI	GCTCTTC	3 cut(s)	27, 497, 749
PcsI	WCGNNNNNNNCGW	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	26, 36
PfeI	GAWTC	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	279, 848, 932, 1049
Ple19I	CGATCG	1 cut(s)	577
PleI	GAGTC	4 cut(s)	7, 347, 451, 889
PpsI	GAGTC	4 cut(s)	7, 347, 451, 889
PsiI	TTATAA	1 cut(s)	926
PspXI	VCTCGAGB	1 cut(s)	831
PsuI	RGATCY	2 cut(s)	214, 760
PvuI	CGATCG	1 cut(s)	577
SalI	GTCGAC	1 cut(s)	10
SapI	GCTCTTC	3 cut(s)	27, 497, 749
SaqAI	TTAA	4 cut(s)	93, 408, 570, 765
SatI	GCNGC	4 cut(s)	278, 847, 931, 1048
Sau3AI	GATC	9 cut(s)	106, 214, 378, 448, 574, 593, 751, 760, 811
SchI	GAGTC	4 cut(s)	7, 347, 452, 889
ScrFI	CCNGG	1 cut(s)	861
SfaNI	GCATC	1 cut(s)	634
Sfr274I	CTCGAG	1 cut(s)	831
SfuI	TTCGAA	1 cut(s)	30
SlaI	CTCGAG	1 cut(s)	831
SmlI	CTYRAG	3 cut(s)	329, 755, 831
SmoI	CTYRAG	3 cut(s)	329, 755, 831
Sse9I	AATT	4 cut(s)	122, 348, 686, 724
SsiI	CCGC	6 cut(s)	99, 254, 278, 294, 300, 545
SspI	AATATT	1 cut(s)	145
SspMI	CTAG	1 cut(s)	899
StyD4I	CCNGG	1 cut(s)	859
TaaI	ACNGT	5 cut(s)	9, 261, 273, 479, 880
TaqI	TCGA	4 cut(s)	11, 30, 632, 832
TasI	AATT	4 cut(s)	122, 348, 686, 724
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	4 cut(s)	93, 408, 570, 765
Tru9I	TTAA	4 cut(s)	93, 408, 570, 765
TscAI	CASTG	2 cut(s)	276, 472
TseI	GCWGC	3 cut(s)	846, 930, 1047
TspDTI	ATGAA	5 cut(s)	35, 183, 199, 674, 979
TspGWI	ACGGA	1 cut(s)	571
TspRI	CASTG	2 cut(s)	276, 472
XhoI	CTCGAG	1 cut(s)	831
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	26, 36
XspI	CTAG	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.