Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

26991724 .. 26993806

Gene Structure 2083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1207700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGTTGAATGAACATAGTTTCTTAGAGGAGTTATTAGCTCTAAGAAGAGACAGCAGGAGTAGCAGTACATGGGAAACCAATATTCCAACAGAAATGAATGATTTGCTGTCTAGTAGTGGTAGCTGGGGAAATTTTGATTACTTTGATCAACAAAAACCTTCATCTTCTTTCTTCCCAAATTCTTCTTCCATCCATGAATTCTCACCTCCATTTGAACCCAACTTTAACAACTTCAACGCAACCTTTAATCAAGAAGTCTACTATCCCTTCGGCTTTGGCGTTACTGATGAAGCACTACTCTCAGCTCAGCAGCAAGTCACTGACTCATCCTACAGCACCCTTGATACGCCGCCGTTTCTGGTCCCGGAAGACAATCCATGGTCCATGCTTGAAGAAGAAGAGTTGGGTTTGCTTGGTGATGAAATACACAACTTGGAGACTCAAGCTGAAGCTGCAGCAGCCTGTAAAGTGGAGCCAACTCAGTCCCCTGACCAAGTCCCCTCTTTCAACGTGGGAATCTGTGTGGAGAGAAATACCAGAGCTACTAATAAGAAGTTGCAGGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGATTGAATGACCGGCTTTCGATGCTAAGATCAATTGTGCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATAGATTACATGAAGGAGCTCCTAGAGAGAATCAACAATTTGCAACAAGAAATTGAAGCAGATTCAGATCAGTTAAATGTGATGAGCCTTTTCAAGGATATCAAACCAAATGAAATGCTAGTCAGGAACTCACCTAAGTTTGATGTGCAAAGGAGGAATGTGGACACCAAGATTGACATATGCTGTGCAGGAAAGCCAGGGCTGTTGTTATCAACAGTGTCTACCTTGGAAGCCTTAGGCCTTGAGATTCAGCAGTGTGTGATTAGCTGCTTCAATGACTTTGCAGTGCAAGCTTCTTGCTCAGAGGATTCTGATCAGAGAACACTGGTAACTTCTGAGGACATAAAGCAAGAATTATTTAGAAATGCAGGATATGGAGGAAGATGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

362

Amino Acids

40.8

Weight (kDa)

4.64

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	196 - 238	7.4e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	287 - 351	1.9e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	261, 914
AciI	CCGC	1 cut(s)	353
AcsI	RAATTY	3 cut(s)	133, 181, 200
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	70
AfiI	CCNNNNNNNGG	1 cut(s)	787
AgsI	TTSAA	9 cut(s)	10, 218, 238, 395, 511, 616, 749, 787, 967
AjnI	CCWGG	1 cut(s)	889
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	9 cut(s)	41, 126, 308, 449, 455, 545, 712, 960, 986
AluI	AGCT	9 cut(s)	41, 126, 308, 449, 455, 545, 712, 960, 986
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	45, 434, 681
AoxI	GGCC	1 cut(s)	931
ApeKI	GCWGC	6 cut(s)	313, 455, 458, 461, 568, 960
ApoI	RAATTY	3 cut(s)	133, 181, 200
AspS9I	GGNCC	2 cut(s)	364, 384
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	3 cut(s)	198, 431, 816
AvaII	GGWCC	2 cut(s)	364, 384
AxyI	CCTNAGG	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	6 cut(s)	325, 442, 470, 473, 580, 947
BccI	CCATC	3 cut(s)	200, 580, 658
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	891
BclI	TGATCA	2 cut(s)	148, 1006
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	3 cut(s)	45, 434, 681
BfaI	CTAG	3 cut(s)	114, 716, 812
BfmI	CTRYAG	3 cut(s)	334, 456, 693
BisI	GCNGC	7 cut(s)	314, 353, 456, 459, 462, 569, 961
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	7 cut(s)	315, 354, 457, 460, 463, 570, 962
Bme1390I	CCNGG	2 cut(s)	368, 891
Bme18I	GGWCC	2 cut(s)	364, 384
BmgT120I	GGNCC	2 cut(s)	364, 384
BmiI	GGNNCC	2 cut(s)	366, 477
BmrFI	CCNGG	2 cut(s)	368, 891
BmsI	GCATC	2 cut(s)	621, 1067
BpiI	GAAGAC	1 cut(s)	378
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	2 cut(s)	429, 956
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	2 cut(s)	759, 1005
BsaJI	CCNNGG	3 cut(s)	380, 890, 918
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	1 cut(s)	787
Bse118I	RCCGGY	1 cut(s)	621
Bse1I	ACTGG	1 cut(s)	1023
Bse21I	CCTNAGG	1 cut(s)	928
Bse8I	GATNNNNATC	2 cut(s)	759, 1005
BseBI	CCWGG	1 cut(s)	891
BseDI	CCNNGG	3 cut(s)	380, 890, 918
BseGI	GGATG	2 cut(s)	192, 329
BseJI	GATNNNNATC	2 cut(s)	759, 1005
BseLI	CCNNNNNNNGG	1 cut(s)	787
BseMII	CTCAG	6 cut(s)	318, 323, 497, 582, 1008, 1020
BseNI	ACTGG	1 cut(s)	1023
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	6 cut(s)	325, 442, 470, 473, 580, 947
BseYI	CCCAGC	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	900
BshFI	GGCC	1 cut(s)	933
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	368, 622
BslFI	GGGAC	3 cut(s)	350, 472, 485
BslI	CCNNNNNNNGG	1 cut(s)	787
BsmAI	GTCTC	3 cut(s)	45, 434, 681
BsmFI	GGGAC	3 cut(s)	350, 472, 485
BsnI	GGCC	1 cut(s)	933
Bsp1286I	GDGCHC	2 cut(s)	651, 714
Bsp143I	GATC	4 cut(s)	148, 638, 760, 1006
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	1 cut(s)	353
BspANI	GGCC	1 cut(s)	933
BspCNI	CTCAG	6 cut(s)	317, 322, 496, 583, 1007, 1021
BspLI	GGNNCC	2 cut(s)	366, 477
BspMAI	CTGCAG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	621
BsrI	ACTGG	1 cut(s)	1023
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	3 cut(s)	380, 890, 918
BssMI	GATC	4 cut(s)	148, 638, 760, 1006
BssT1I	CCWWGG	2 cut(s)	380, 918
Bst2UI	CCWGG	1 cut(s)	891
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	2 cut(s)	43, 396
BstC8I	GCNNGC	1 cut(s)	984
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	785
BstF5I	GGATG	2 cut(s)	192, 329
BstKTI	GATC	4 cut(s)	151, 641, 763, 1009
BstMAI	GTCTC	3 cut(s)	45, 434, 681
BstMBI	GATC	4 cut(s)	148, 638, 760, 1006
BstMWI	GCNNNNNNNGC	6 cut(s)	63, 455, 461, 568, 631, 983
BstNI	CCWGG	1 cut(s)	891
BstSCI	CCNGG	2 cut(s)	366, 889
BstSFI	CTRYAG	3 cut(s)	334, 456, 693
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	6 cut(s)	325, 442, 470, 473, 580, 947
BstV2I	GAAGAC	1 cut(s)	378
Bsu36I	CCTNAGG	1 cut(s)	928
BsuRI	GGCC	1 cut(s)	933
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	192, 329
BtsI	GCAGTG	2 cut(s)	953, 984
BtsIMutI	CAGTG	5 cut(s)	321, 915, 953, 984, 1016
Cac8I	GCNNGC	1 cut(s)	984
Cfr10I	RCCGGY	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	364, 384
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	5 cut(s)	72, 197, 381, 388, 703
CviQI	GTAC	1 cut(s)	69
DpnI	GATC	4 cut(s)	150, 640, 762, 1008
DpnII	GATC	4 cut(s)	148, 638, 760, 1006
Eam1104I	CTCTTC	2 cut(s)	43, 396
EarI	CTCTTC	2 cut(s)	43, 396
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	380, 918
Eco147I	AGGCCT	1 cut(s)	933
Eco24I	GRGCYC	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	793
Eco47I	GGWCC	2 cut(s)	364, 384
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	928
EcoICRI	GAGCTC	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	785
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	889
EcoRV	GATATC	1 cut(s)	793
EcoT14I	CCWWGG	2 cut(s)	380, 918
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	2 cut(s)	380, 918
FaeI	CATG	5 cut(s)	75, 200, 384, 391, 706
FaqI	GGGAC	3 cut(s)	350, 472, 485
FatI	CATG	5 cut(s)	71, 196, 380, 387, 702
FauNDI	CATATG	1 cut(s)	872
FbaI	TGATCA	2 cut(s)	148, 1006
FblI	GTMKAC	2 cut(s)	261, 914
Fnu4HI	GCNGC	7 cut(s)	314, 353, 456, 459, 462, 569, 961
FokI	GGATG	2 cut(s)	179, 316
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	7 cut(s)	314, 353, 456, 459, 462, 569, 961
FspBI	CTAG	3 cut(s)	114, 716, 812
GluI	GCNGC	7 cut(s)	314, 353, 456, 459, 462, 569, 961
GsaI	CCCAGC	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	933
HapII	CCGG	2 cut(s)	368, 622
Hin1II	CATG	5 cut(s)	75, 200, 384, 391, 706
HindIII	AAGCTT	1 cut(s)	984
HinfI	GANTC	8 cut(s)	326, 442, 519, 580, 723, 755, 940, 1001
HpaII	CCGG	2 cut(s)	368, 622
HphI	GGTGA	3 cut(s)	198, 431, 816
Hpy166II	GTNNAC	3 cut(s)	262, 856, 915
Hpy188I	TCNGA	5 cut(s)	760, 997, 1006, 1011, 1030
Hpy188III	TCNNGA	2 cut(s)	254, 817
Hpy8I	GTNNAC	3 cut(s)	262, 856, 915
HpyAV	CCTTC	3 cut(s)	171, 280, 700
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	8 cut(s)	458, 562, 736, 841, 881, 977, 982, 1061
HpyF10VI	GCNNNNNNNGC	6 cut(s)	63, 455, 461, 568, 631, 983
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	5 cut(s)	75, 200, 384, 391, 706
Ksp22I	TGATCA	2 cut(s)	148, 1006
Kzo9I	GATC	4 cut(s)	148, 638, 760, 1006
LmnI	GCTCC	3 cut(s)	475, 709, 717
Lsp1109I	GCAGC	6 cut(s)	325, 442, 470, 473, 580, 947
LweI	GCATC	2 cut(s)	621, 1067
MaeI	CTAG	3 cut(s)	114, 716, 812
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	283, 319, 1021
MalI	GATC	4 cut(s)	150, 640, 762, 1008
MboI	GATC	4 cut(s)	148, 638, 760, 1006
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	651, 714
MluCI	AATT	7 cut(s)	133, 181, 200, 642, 730, 744, 1046
MlyI	GAGTC	2 cut(s)	320, 436
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	7 cut(s)	22, 219, 514, 840, 991, 1024, 1064
MseI	TTAA	3 cut(s)	228, 249, 767
MspI	CCGG	2 cut(s)	368, 622
MspR9I	CCNGG	2 cut(s)	368, 891
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	891
MwoI	GCNNNNNNNGC	6 cut(s)	63, 455, 461, 568, 631, 983
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	872
NdeII	GATC	4 cut(s)	148, 638, 760, 1006
NlaIII	CATG	5 cut(s)	75, 200, 384, 391, 706
NlaIV	GGNNCC	2 cut(s)	366, 477
NmuCI	GTSAC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	933
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	6 cut(s)	519, 580, 723, 755, 940, 1001
PflFI	GACNNNGTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	7 cut(s)	315, 354, 457, 460, 463, 570, 962
PleI	GAGTC	2 cut(s)	320, 436
PpsI	GAGTC	2 cut(s)	320, 436
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	889
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	889
PspN4I	GGNNCC	2 cut(s)	366, 477
PspPI	GGNCC	2 cut(s)	364, 384
PstI	CTGCAG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	228, 249, 767
SatI	GCNGC	7 cut(s)	314, 353, 456, 459, 462, 569, 961
Sau3AI	GATC	4 cut(s)	148, 638, 760, 1006
Sau96I	GGNCC	2 cut(s)	364, 384
SchI	GAGTC	2 cut(s)	320, 436
ScrFI	CCNGG	2 cut(s)	368, 891
SduI	GDGCHC	2 cut(s)	651, 714
SfaNI	GCATC	2 cut(s)	621, 1067
SfcI	CTRYAG	3 cut(s)	334, 456, 693
SinI	GGWCC	2 cut(s)	364, 384
SmlI	CTYRAG	2 cut(s)	444, 935
SmoI	CTYRAG	2 cut(s)	444, 935
Sse9I	AATT	7 cut(s)	133, 181, 200, 642, 730, 744, 1046
SseBI	AGGCCT	1 cut(s)	933
SsiI	CCGC	1 cut(s)	353
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	114, 716, 812
SstI	GAGCTC	1 cut(s)	714
StuI	AGGCCT	1 cut(s)	933
StyD4I	CCNGG	2 cut(s)	366, 889
StyI	CCWWGG	2 cut(s)	380, 918
TaaI	ACNGT	1 cut(s)	910
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	629
TasI	AATT	7 cut(s)	133, 181, 200, 642, 730, 744, 1046
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	6 cut(s)	519, 580, 723, 755, 940, 1001
Tru1I	TTAA	3 cut(s)	228, 249, 767
Tru9I	TTAA	3 cut(s)	228, 249, 767
TscAI	CASTG	5 cut(s)	328, 915, 953, 984, 1023
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	6 cut(s)	313, 455, 458, 461, 568, 960
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	8 cut(s)	27, 113, 153, 213, 306, 438, 719, 819
TspRI	CASTG	5 cut(s)	328, 915, 953, 984, 1023
Tth111I	GACNNNGTC	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	364, 384
XagI	CCTNNNNNAGG	1 cut(s)	785
XapI	RAATTY	3 cut(s)	133, 181, 200
XmiI	GTMKAC	2 cut(s)	261, 914
XspI	CTAG	3 cut(s)	114, 716, 812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.