Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

18181589 .. 18182464

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17980.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAGTTGAATGAACATAGTTTCTTACAGGAGTTATTTGCTCTAAGAGGAGACAGTAGTAGTAGCAGTACATGGGAAACCAATATTCCAACAGAAATGAATGATTTGTTGTCTAGTAGTGGTAGCTGGGGAAATTTTGATCACTTCGATCAACAAAACCCTTCATCTTCTTTCTTCCCAAATTCTTCTTCCACCCATGAATTCTCACCTCCATTTGAACCCAACTTTAACAACTTCAACGCAACCTTTAATCAAGAAGTCTACTATCCCTTCGGCTTTGGCGTTACTGATGAAGCACTACTCTCAGCTCAGCAGCAAGTCACTGACTCATCCTACAGCACCCTTGATACGCCGCCGTTTCCGGTCCAGGAAGACAATCCATGGTCCATGCTTGAAGAAGAAGAGTTGGGTTTGCTTGGTGATGAAATACACTACTTGGAGACTCAAGCTGAAGCTGCAGCAGCCTGTAAAGTGGAGCCAACTCAGTCCCCTGACCAAGTCCCCTCTTTCAACGTGGGAATCTGTGCGGAGAGAAATACCAGAGCTACTAATAAGAAGTTGCAGGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGATTGAACGACCGGCTTTCGATGGTTAGATCAATTGTGCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATAGATTACATGAAGGAGCTCCTAGAGAGAATCAACAATTTGCAACAAGAAATTGAAACAGATTCATCGATCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

257

Amino Acids

28.98

Weight (kDa)

4.51

Isoelectric Point (pI)

68.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	261
AciI	CCGC	2 cut(s)	353, 527
AcsI	RAATTY	3 cut(s)	133, 181, 200
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	1 cut(s)	70
AgsI	TTSAA	7 cut(s)	10, 218, 238, 395, 511, 616, 749
AjnI	CCWGG	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	6 cut(s)	126, 308, 449, 455, 545, 712
AluI	AGCT	6 cut(s)	126, 308, 449, 455, 545, 712
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	3 cut(s)	45, 434, 681
ApeKI	GCWGC	5 cut(s)	313, 455, 458, 461, 568
ApoI	RAATTY	3 cut(s)	133, 181, 200
AspS9I	GGNCC	2 cut(s)	364, 384
AsuHPI	GGTGA	2 cut(s)	198, 431
AvaII	GGWCC	2 cut(s)	364, 384
BaeGI	GKGCMC	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	714
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	5 cut(s)	325, 442, 470, 473, 580
BccI	CCATC	3 cut(s)	580, 625, 658
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	368
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	3 cut(s)	45, 434, 681
BfaI	CTAG	2 cut(s)	114, 716
BfmI	CTRYAG	3 cut(s)	334, 456, 693
BisI	GCNGC	6 cut(s)	314, 353, 456, 459, 462, 569
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	6 cut(s)	315, 354, 457, 460, 463, 570
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	364, 384
BmgT120I	GGNCC	2 cut(s)	364, 384
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	378
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	429
Bsa29I	ATCGAT	1 cut(s)	761
BsaJI	CCNNGG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	361
Bse118I	RCCGGY	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	368
BseCI	ATCGAT	1 cut(s)	761
BseDI	CCNNGG	1 cut(s)	380
BseGI	GGATG	1 cut(s)	329
BseMII	CTCAG	4 cut(s)	318, 323, 497, 582
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	651
BseXI	GCAGC	5 cut(s)	325, 442, 470, 473, 580
BseYI	CCCAGC	1 cut(s)	126
Bsh1285I	CGRYCG	1 cut(s)	622
BshVI	ATCGAT	1 cut(s)	761
BsiEI	CGRYCG	1 cut(s)	622
BsiHKAI	GWGCWC	1 cut(s)	714
BsiSI	CCGG	2 cut(s)	362, 622
BslFI	GGGAC	2 cut(s)	472, 485
BsmAI	GTCTC	3 cut(s)	45, 434, 681
BsmFI	GGGAC	2 cut(s)	472, 485
Bsp1286I	GDGCHC	2 cut(s)	651, 714
Bsp143I	GATC	4 cut(s)	139, 148, 638, 762
Bsp1720I	GCTNAGC	1 cut(s)	309
Bsp19I	CCATGG	1 cut(s)	380
BspACI	CCGC	2 cut(s)	353, 527
BspCNI	CTCAG	4 cut(s)	317, 322, 496, 583
BspDI	ATCGAT	1 cut(s)	761
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	621
BssAI	RCCGGY	1 cut(s)	621
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	4 cut(s)	139, 148, 638, 762
BssT1I	CCWWGG	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	1 cut(s)	396
BstDEI	CTNAG	5 cut(s)	44, 304, 309, 483, 591
BstDSI	CCRYGG	1 cut(s)	380
BstF5I	GGATG	1 cut(s)	329
BstKTI	GATC	4 cut(s)	142, 151, 641, 765
BstMAI	GTCTC	3 cut(s)	45, 434, 681
BstMBI	GATC	4 cut(s)	139, 148, 638, 762
BstMCI	CGRYCG	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 461, 568
BstNI	CCWGG	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	3 cut(s)	334, 456, 693
BstSLI	GKGCMC	1 cut(s)	651
BstV1I	GCAGC	5 cut(s)	325, 442, 470, 473, 580
BstV2I	GAAGAC	1 cut(s)	378
Bsu15I	ATCGAT	1 cut(s)	761
BsuTUI	ATCGAT	1 cut(s)	761
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	329
BtsIMutI	CAGTG	1 cut(s)	321
Cfr10I	RCCGGY	1 cut(s)	621
Cfr13I	GGNCC	2 cut(s)	364, 384
ClaI	ATCGAT	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	69
CviAII	CATG	5 cut(s)	72, 197, 381, 388, 703
CviQI	GTAC	1 cut(s)	69
DdeI	CTNAG	5 cut(s)	44, 304, 309, 483, 591
DpnI	GATC	4 cut(s)	141, 150, 640, 764
DpnII	GATC	4 cut(s)	139, 148, 638, 762
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	714
Eco47I	GGWCC	2 cut(s)	364, 384
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	712
EcoRI	GAATTC	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	5 cut(s)	75, 200, 384, 391, 706
FaiI	YATR	8 cut(s)	18, 73, 198, 382, 389, 680, 695, 704
FaqI	GGGAC	2 cut(s)	472, 485
FatI	CATG	5 cut(s)	71, 196, 380, 387, 702
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	6 cut(s)	314, 353, 456, 459, 462, 569
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	6 cut(s)	314, 353, 456, 459, 462, 569
FspBI	CTAG	2 cut(s)	114, 716
GluI	GCNGC	6 cut(s)	314, 353, 456, 459, 462, 569
GsaI	CCCAGC	1 cut(s)	130
HapII	CCGG	2 cut(s)	362, 622
Hin1II	CATG	5 cut(s)	75, 200, 384, 391, 706
HinfI	GANTC	6 cut(s)	326, 442, 519, 580, 723, 755
HpaII	CCGG	2 cut(s)	362, 622
HphI	GGTGA	2 cut(s)	198, 431
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	171, 280, 700
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	3 cut(s)	458, 562, 736
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 461, 568
HpyF3I	CTNAG	5 cut(s)	44, 304, 309, 483, 591
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	5 cut(s)	75, 200, 384, 391, 706
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	139, 148, 638, 762
LmnI	GCTCC	3 cut(s)	475, 709, 717
Lsp1109I	GCAGC	5 cut(s)	325, 442, 470, 473, 580
MaeI	CTAG	2 cut(s)	114, 716
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	283, 319
MalI	GATC	4 cut(s)	141, 150, 640, 764
MboI	GATC	4 cut(s)	139, 148, 638, 762
MfeI	CAATTG	1 cut(s)	642
MhlI	GDGCHC	2 cut(s)	651, 714
MluCI	AATT	6 cut(s)	133, 181, 200, 642, 730, 744
MlyI	GAGTC	2 cut(s)	320, 436
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	3 cut(s)	41, 219, 514
MseI	TTAA	3 cut(s)	228, 249, 769
MspI	CCGG	2 cut(s)	362, 622
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	3 cut(s)	455, 461, 568
NcoI	CCATGG	1 cut(s)	380
NdeII	GATC	4 cut(s)	139, 148, 638, 762
NlaIII	CATG	5 cut(s)	75, 200, 384, 391, 706
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	4 cut(s)	519, 580, 723, 755
PflFI	GACNNNGTC	1 cut(s)	497
PfoI	TCCNGGA	1 cut(s)	366
PkrI	GCNGC	6 cut(s)	315, 354, 457, 460, 463, 570
PleI	GAGTC	2 cut(s)	320, 436
PpsI	GAGTC	2 cut(s)	320, 436
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	366
PspFI	CCCAGC	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	2 cut(s)	364, 384
PstI	CTGCAG	1 cut(s)	460
PsyI	GACNNNGTC	1 cut(s)	497
RsaI	GTAC	1 cut(s)	70
RsaNI	GTAC	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	714
SaqAI	TTAA	3 cut(s)	228, 249, 769
SatI	GCNGC	6 cut(s)	314, 353, 456, 459, 462, 569
Sau3AI	GATC	4 cut(s)	139, 148, 638, 762
Sau96I	GGNCC	2 cut(s)	364, 384
SchI	GAGTC	2 cut(s)	320, 436
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	2 cut(s)	651, 714
SetI	ASST	9 cut(s)	128, 211, 248, 310, 451, 457, 516, 547, 714
SfcI	CTRYAG	3 cut(s)	334, 456, 693
SinI	GGWCC	2 cut(s)	364, 384
SmlI	CTYRAG	1 cut(s)	444
SmoI	CTYRAG	1 cut(s)	444
Sse9I	AATT	6 cut(s)	133, 181, 200, 642, 730, 744
SsiI	CCGC	2 cut(s)	353, 527
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	2 cut(s)	114, 716
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	147, 629, 761
TasI	AATT	6 cut(s)	133, 181, 200, 642, 730, 744
TatI	WGTACW	1 cut(s)	68
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	4 cut(s)	519, 580, 723, 755
Tru1I	TTAA	3 cut(s)	228, 249, 769
Tru9I	TTAA	3 cut(s)	228, 249, 769
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	5 cut(s)	313, 455, 458, 461, 568
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	8 cut(s)	27, 113, 153, 213, 306, 438, 719, 747
TspRI	CASTG	1 cut(s)	328
Tth111I	GACNNNGTC	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	364, 384
XapI	RAATTY	3 cut(s)	133, 181, 200
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	2 cut(s)	114, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.