Rh7CG454000

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002347
Physical Location & Seq
Forward (+)
59778625 .. 59780814
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG454000.1

Sequence Viewer

Length: 1197 bp
ATGGAGCTCAATGAACATAGTTTCTTAGAGGAGCTGTTAGCTCTTAGAAGAGACAGTTCATGGGAAAGCATTCCCCCCGAAATGAATGAGTTCTTGTCTAGTAGCACCTGGAGTAGTTTCGATTACTTCGATAATCAAAACCCACCACCATTTTTCCCCCAGTCTTCTTCCGGCCAAGAATTTTCACCTCCATTTGAACCAAACTTGAACAACTACCACAACAATACCACTTTCAATGAAGTGTACTATCCCTTAGGCTTTGGTACTGACGAACTGCTCTCAGCTCCACAGGTCACCACTGATTCGTCTTACAACACACTCGGTGATACGCCGCCGTTTCCTGTTCAGGAAGACAACAATCCATGGTCCATGCTCGAAGAAGAAGAGCTGAGTTTACTTGGAGATGAAATACACAACTTGGAGACTCAGGCTGCTGCTTGTAAAGTGGAGCCGACTCAGTCCTCCTCCTCCCCTGAAGCAGCTCCTGTCTTCAACATGGGTATGTGTGTAGAAAGAAACAGCAGAACTAGCAAGAAGTTGCAGGGGCAGCCATCTAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGGTTAAATGACCGCCTTTCGATGCTAAGATCAATTGTTCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACCATAGATTACATGAAAGAACTCCTGGACAGAATCAACAACTTGCAGCATGAAATTGAAGAAAGTGGTTCAGATCAGTTGAATGTGATGAGACTTTTCAAGGATATGAAACCAAATGAAATGCTAGTGAGGAACTCACCCAAGTTTGATGTTCAAAGGAGGAATGTGGACACGAGGATTGAGATTTGCTGTGCAGGAAAGCCAGGGTTATTACTATCCACAGTTACTACCTTGGAAGCATTAGGCCTTGAGATTCAACAGTGTGTTATTAGCTGCTTTAATGATTTTGCAATGCAAGCTTCTTGTTCAGAGGTATGTCTCAAACTATATATTGGTTTTTTAATTATTTTATTCTTCAGATATCATAATGGTATCAATATGTGTTTGTTTAGTTGGGCATGCTCTTATGTCTTCTTGTGTTCATTGATGTCATGTAAACAGGGTTTGGATCAGAGAACACTAGTAACTTCTGAGGACATGAAGCAAGCACTGTTTAGAAATGCAGGATATGGAGGAAGGTGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

398

Amino Acids

45.36

Weight (kDa)

4.93

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 189 - 231 8.5e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 332, 589, 601
AclWI GGATC 1 cut(s) 1125
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 2 cut(s) 495, 1009
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 2 cut(s) 245, 265
AgsI TTSAA 9 cut(s) 197, 208, 235, 493, 728, 751, 769, 824, 926
AhlI ACTAGT 1 cut(s) 1129
AjnI CCWGG 3 cut(s) 107, 693, 871
AluBI AGCT 8 cut(s) 7, 34, 41, 284, 388, 482, 942, 968
AluI AGCT 8 cut(s) 7, 34, 41, 284, 388, 482, 942, 968
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 5 cut(s) 45, 416, 660, 754, 992
AlwI GGATC 1 cut(s) 1125
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 2 cut(s) 172, 913
ApeKI GCWGC 6 cut(s) 431, 434, 479, 547, 715, 942
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 2 cut(s) 69, 89
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 4 cut(s) 177, 286, 335, 798
AvaII GGWCC 1 cut(s) 366
AxyI CCTNAGG 1 cut(s) 253
BanII GRGCYC 1 cut(s) 9
BauI CACGAG 1 cut(s) 841
BbsI GAAGAC 4 cut(s) 156, 357, 481, 1072
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 6 cut(s) 418, 421, 491, 559, 727, 929
BccI CCATC 2 cut(s) 559, 637
BceAI ACGGC 1 cut(s) 319
BciT130I CCWGG 3 cut(s) 109, 695, 873
BcoDI GTCTC 5 cut(s) 45, 416, 660, 754, 992
BcuI ACTAGT 1 cut(s) 1129
BfaI CTAG 4 cut(s) 99, 528, 794, 1130
BisI GCNGC 7 cut(s) 332, 432, 435, 480, 548, 716, 943
BlsI GCNGC 7 cut(s) 333, 433, 436, 481, 549, 717, 944
Bme1390I CCNGG 3 cut(s) 109, 695, 873
Bme18I GGWCC 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 3 cut(s) 109, 695, 873
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 4 cut(s) 156, 357, 481, 1072
BpmI CTGGAG 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 938
BsaJI CCNNGG 3 cut(s) 362, 872, 900
Bse1I ACTGG 1 cut(s) 160
Bse21I CCTNAGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 966
BseBI CCWGG 3 cut(s) 109, 695, 873
BseDI CCNNGG 3 cut(s) 362, 872, 900
BseMI GCAATG 1 cut(s) 966
BseMII CTCAG 6 cut(s) 294, 380, 440, 470, 561, 1131
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 3 cut(s) 44, 454, 457
BseXI GCAGC 6 cut(s) 418, 421, 491, 559, 727, 929
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 2 cut(s) 174, 915
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 5 cut(s) 45, 416, 660, 754, 992
BsmI GAATGC 1 cut(s) 69
BsnI GGCC 2 cut(s) 174, 915
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 617, 742, 1117
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 3 cut(s) 332, 589, 601
BspANI GGCC 2 cut(s) 174, 915
BspCNI CTCAG 6 cut(s) 293, 381, 439, 469, 562, 1132
BspLI GGNNCC 1 cut(s) 450
BspPI GGATC 1 cut(s) 1125
BspQI GCTCTTC 1 cut(s) 378
BsrDI GCAATG 1 cut(s) 966
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 362, 872, 900
BssMI GATC 3 cut(s) 617, 742, 1117
BssSI CACGAG 1 cut(s) 841
BssT1I CCWWGG 2 cut(s) 362, 900
Bst2BI CACGAG 1 cut(s) 841
Bst2UI CCWGG 3 cut(s) 109, 695, 873
Bst4CI ACNGT 4 cut(s) 56, 892, 930, 1161
Bst6I CTCTTC 2 cut(s) 43, 378
BstC8I GCNNGC 3 cut(s) 966, 1069, 1155
BstDSI CCRYGG 1 cut(s) 362
BstEII GGTNACC 1 cut(s) 292
BstKTI GATC 3 cut(s) 620, 745, 1120
BstMAI GTCTC 5 cut(s) 45, 416, 660, 754, 992
BstMBI GATC 3 cut(s) 617, 742, 1117
BstMWI GCNNNNNNNGC 3 cut(s) 528, 547, 965
BstNI CCWGG 3 cut(s) 109, 695, 873
BstNSI RCATGY 1 cut(s) 1071
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 3 cut(s) 107, 693, 871
BstV1I GCAGC 6 cut(s) 418, 421, 491, 559, 727, 929
BstV2I GAAGAC 4 cut(s) 156, 357, 481, 1072
Bsu36I CCTNAGG 1 cut(s) 253
BsuRI GGCC 2 cut(s) 174, 915
BtgI CCRYGG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 297, 935, 1157
Cac8I GCNNGC 3 cut(s) 966, 1069, 1155
CaiI CAGNNNCTG 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 366
Csp6I GTAC 2 cut(s) 244, 264
CviAII CATG 9 cut(s) 60, 363, 370, 496, 682, 719, 1068, 1101, 1147
CviQI GTAC 2 cut(s) 244, 264
DpnI GATC 3 cut(s) 619, 744, 1119
DpnII GATC 3 cut(s) 617, 742, 1117
DraIII CACNNNGTG 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 2 cut(s) 43, 378
EarI CTCTTC 2 cut(s) 43, 378
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 362, 900
Eco147I AGGCCT 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 9
Eco32I GATATC 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 366
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 2 cut(s) 495, 1009
Eco81I CCTNAGG 1 cut(s) 253
Eco91I GGTNACC 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 7
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 3 cut(s) 107, 693, 871
EcoRV GATATC 1 cut(s) 1031
EcoT14I CCWWGG 2 cut(s) 362, 900
EcoT38I GRGCYC 1 cut(s) 9
ErhI CCWWGG 2 cut(s) 362, 900
FaeI CATG 9 cut(s) 63, 366, 373, 499, 685, 722, 1071, 1104, 1150
FatI CATG 9 cut(s) 59, 362, 369, 495, 681, 718, 1067, 1100, 1146
Fnu4HI GCNGC 7 cut(s) 332, 432, 435, 480, 548, 716, 943
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 7 cut(s) 332, 432, 435, 480, 548, 716, 943
FspBI CTAG 4 cut(s) 99, 528, 794, 1130
GluI GCNGC 7 cut(s) 332, 432, 435, 480, 548, 716, 943
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 2 cut(s) 174, 915
HapII CCGG 1 cut(s) 171
Hin1II CATG 9 cut(s) 63, 366, 373, 499, 685, 722, 1071, 1104, 1150
HindIII AAGCTT 1 cut(s) 966
HinfI GANTC 6 cut(s) 302, 424, 454, 559, 702, 922
HpaII CCGG 1 cut(s) 171
HphI GGTGA 4 cut(s) 177, 286, 335, 798
Hpy166II GTNNAC 4 cut(s) 244, 395, 838, 1106
Hpy188I TCNGA 5 cut(s) 742, 979, 1028, 1122, 1141
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 4 cut(s) 244, 395, 838, 1106
HpyAV CCTTC 1 cut(s) 1179
HpyCH4III ACNGT 4 cut(s) 56, 892, 930, 1161
HpyCH4V TGCA 6 cut(s) 541, 715, 863, 959, 964, 1172
HpyF10VI GCNNNNNNNGC 3 cut(s) 528, 547, 965
Hsp92II CATG 9 cut(s) 63, 366, 373, 499, 685, 722, 1071, 1104, 1150
Kzo9I GATC 3 cut(s) 617, 742, 1117
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 5 cut(s) 4, 31, 289, 448, 487
Lsp1109I GCAGC 6 cut(s) 418, 421, 491, 559, 727, 929
LweI GCATC 1 cut(s) 600
MaeI CTAG 4 cut(s) 99, 528, 794, 1130
MaeIII GTNAC 3 cut(s) 292, 892, 1132
MalI GATC 3 cut(s) 619, 744, 1119
MboI GATC 3 cut(s) 617, 742, 1117
MfeI CAATTG 1 cut(s) 621
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 179, 621, 723, 1011
MlyI GAGTC 2 cut(s) 418, 448
MroXI GAANNNNTTC 2 cut(s) 69, 89
MseI TTAA 3 cut(s) 593, 948, 1010
MslI CAYNNNNRTG 1 cut(s) 500
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 3 cut(s) 109, 695, 873
MunI CAATTG 1 cut(s) 621
Mva1269I GAATGC 1 cut(s) 69
MvaI CCWGG 3 cut(s) 109, 695, 873
MwoI GCNNNNNNNGC 3 cut(s) 528, 547, 965
NcoI CCATGG 1 cut(s) 362
NdeII GATC 3 cut(s) 617, 742, 1117
NlaIII CATG 9 cut(s) 63, 366, 373, 499, 685, 722, 1071, 1104, 1150
NlaIV GGNNCC 1 cut(s) 450
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 1071
PaeI GCATGC 1 cut(s) 1071
PceI AGGCCT 1 cut(s) 915
PciSI GCTCTTC 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PctI GAATGC 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 69, 89
PfeI GAWTC 4 cut(s) 302, 559, 702, 922
PflFI GACNNNGTC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 693
PkrI GCNGC 7 cut(s) 333, 433, 436, 481, 549, 717, 944
PleI GAGTC 2 cut(s) 418, 448
PpsI GAGTC 2 cut(s) 418, 448
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 3 cut(s) 107, 693, 871
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 3 cut(s) 107, 693, 871
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 2 cut(s) 245, 265
RsaNI GTAC 2 cut(s) 244, 264
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 3 cut(s) 593, 948, 1010
SatI GCNGC 7 cut(s) 332, 432, 435, 480, 548, 716, 943
Sau3AI GATC 3 cut(s) 617, 742, 1117
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 2 cut(s) 418, 448
ScrFI CCNGG 3 cut(s) 109, 695, 873
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 1 cut(s) 600
SinI GGWCC 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SpeI ACTAGT 1 cut(s) 1129
SphI GCATGC 1 cut(s) 1071
Sse9I AATT 4 cut(s) 179, 621, 723, 1011
SseBI AGGCCT 1 cut(s) 915
SsiI CCGC 3 cut(s) 332, 589, 601
SspMI CTAG 4 cut(s) 99, 528, 794, 1130
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 915
StyD4I CCNGG 3 cut(s) 107, 693, 871
StyI CCWWGG 2 cut(s) 362, 900
TaaI ACNGT 4 cut(s) 56, 892, 930, 1161
TaqI TCGA 4 cut(s) 120, 129, 375, 608
TasI AATT 4 cut(s) 179, 621, 723, 1011
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 4 cut(s) 302, 559, 702, 922
Tru1I TTAA 3 cut(s) 593, 948, 1010
Tru9I TTAA 3 cut(s) 593, 948, 1010
TscAI CASTG 3 cut(s) 304, 935, 1164
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 6 cut(s) 431, 434, 479, 547, 715, 942
Tsp45I GTSAC 1 cut(s) 292
TspRI CASTG 3 cut(s) 304, 935, 1164
Tth111I GACNNNGTC 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 366
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 1071
XmnI GAANNNNTTC 2 cut(s) 69, 89
XspI CTAG 4 cut(s) 99, 528, 794, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.