Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

30288443 .. 30290295

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1306400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGCTTAGCCAACATGGTTTCTTAGAGGAACTGCTACTGGCTCCAAGAAGAGACAGTTGGAGCAGCTACTCCTCTGGATTGAATGAGTTATTGCCCATCAATGGATGGAGTTTCGATTCTTTTGAAGAGAACCCAGTTCTGGTTTCCTCAATTAATCCTCAATTTGTTGGATTCTCCACCACACAACCAACCTTTGAAGAATGCCCCTTCACCACCACCACTACTGCCTCCTCCTCCTCCTACCCTTTTGTAGTTGGTGGCCTCTGTGCAGTCCCAGAGATTAATGACACTACTACCCCTCCTCCATTTCCACCACAAGATCATCGGGATTACCCTTCAATGGTGGAAGATGAAGAGTTTGGTAATTTTCTTGGGTGTGAAAACCACAGCAGCTGCTTGGAGTTGGAAGAAAGCAAGAACAATAATATCAGTACTTGCAAAGTTGAGATGGACCAGGAAGCAGCAGATCATCACTTTATTCCTTCAGCTTTTACCATGGGATTGTGTGGTGAAAAGAGAAGCAGTAAGTCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTTATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCCATGCTCAGATCAATTGTCCCAAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGATTATATGAAAGAGCTTTTGGAAAGGATCAATAAGTTGCAAGAAGGGGTTGAAGAGGGTACCAATCAAATCAGCTTAATGGGCACCTCCAAGGACCTAAACCCCAGTGAGGTACTAGTCAGAAATTCCCCCAAGTTTGATGTGGAGAGGAGAGACAAAGATACCAGGATAGACATATGCTGTGCAAGCAAGCCAGGATTGCTGCTGTCAACAGTGAACAGTATAGAAGCATTAGGGCTTGAGATTCAACAGTGTGTTATAAGTTGTTTCAATGATTTTTCAATGCAAGCTTCATGTTTTGAGGGAGCTGAGCAGAGAGATTTATTAAGTCCTCAGGACATAAAGCAAGCATTGTTCAGAAATGCAGGATATGGAGGAAGATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

356

Amino Acids

39.73

Weight (kDa)

4.93

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	190 - 232	7.2e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	274 - 346	2.4e-09	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	938
Acc65I	GGTACC	1 cut(s)	737
AccB1I	GGYRCC	2 cut(s)	737, 761
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	1 cut(s)	713
AcsI	RAATTY	1 cut(s)	802
AcuI	CTGAAG	1 cut(s)	471
AfaI	GTAC	3 cut(s)	436, 739, 792
AfeI	AGCGCT	1 cut(s)	593
AfiI	CCNNNNNNNGG	4 cut(s)	104, 142, 343, 787
AhlI	ACTAGT	1 cut(s)	793
AjnI	CCWGG	3 cut(s)	456, 842, 871
AjuI	GAANNNNNNNTTGG	4 cut(s)	43, 75, 680, 712
AluBI	AGCT	8 cut(s)	7, 69, 396, 491, 694, 753, 968, 986
AluI	AGCT	8 cut(s)	7, 69, 396, 491, 694, 753, 968, 986
Alw26I	GTCTC	3 cut(s)	48, 663, 825
AlwI	GGATC	1 cut(s)	713
AlwNI	CAGNNNCTG	1 cut(s)	396
Aor51HI	AGCGCT	1 cut(s)	593
AoxI	GGCC	1 cut(s)	262
ApeKI	GCWGC	6 cut(s)	66, 393, 396, 464, 550, 880
ApoI	RAATTY	1 cut(s)	802
AseI	ATTAAT	2 cut(s)	156, 285
Asp718I	GGTACC	1 cut(s)	737
AspLEI	GCGC	1 cut(s)	594
AspS9I	GGNCC	2 cut(s)	454, 772
AsuHPI	GGTGA	2 cut(s)	205, 524
AvaII	GGWCC	2 cut(s)	454, 772
AxyI	CCTNAGG	1 cut(s)	1011
BaeGI	GKGCMC	1 cut(s)	764
BanI	GGYRCC	2 cut(s)	737, 761
BbvI	GCAGC	6 cut(s)	78, 383, 405, 476, 562, 867
BccI	CCATC	4 cut(s)	102, 107, 445, 640
BciT130I	CCWGG	3 cut(s)	458, 844, 873
BcoDI	GTCTC	3 cut(s)	48, 663, 825
BcuI	ACTAGT	1 cut(s)	793
BfaI	CTAG	1 cut(s)	794
BfoI	RGCGCY	1 cut(s)	595
BisI	GCNGC	6 cut(s)	67, 394, 397, 465, 551, 881
BlpI	GCTNAGC	2 cut(s)	8, 987
BlsI	GCNGC	6 cut(s)	68, 395, 398, 466, 552, 882
BmcAI	AGTACT	1 cut(s)	436
Bme1390I	CCNGG	3 cut(s)	458, 844, 873
Bme18I	GGWCC	2 cut(s)	454, 772
BmgT120I	GGNCC	2 cut(s)	454, 772
BmiI	GGNNCC	3 cut(s)	45, 739, 763
BmrFI	CCNGG	3 cut(s)	458, 844, 873
BmrI	ACTGGG	2 cut(s)	131, 777
BmuI	ACTGGG	2 cut(s)	131, 777
Bpu1102I	GCTNAGC	2 cut(s)	8, 987
BpuEI	CTTGAG	1 cut(s)	938
BsaJI	CCNNGG	2 cut(s)	498, 768
BsaXI	ACNNNNNCTCC	4 cut(s)	286, 289, 316, 319
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 142, 343, 787
Bse1I	ACTGG	3 cut(s)	45, 137, 783
Bse21I	CCTNAGG	1 cut(s)	1011
BseBI	CCWGG	3 cut(s)	458, 844, 873
BseDI	CCNNGG	2 cut(s)	498, 768
BseGI	GGATG	1 cut(s)	113
BseLI	CCNNNNNNNGG	4 cut(s)	104, 142, 343, 787
BseMII	CTCAG	3 cut(s)	631, 978, 1025
BseNI	ACTGG	3 cut(s)	45, 137, 783
BseRI	GAGGAG	6 cut(s)	64, 223, 226, 229, 294, 841
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	6 cut(s)	78, 383, 405, 476, 562, 867
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	264
BshNI	GGYRCC	2 cut(s)	737, 761
BslFI	GGGAC	2 cut(s)	260, 614
BslI	CCNNNNNNNGG	4 cut(s)	104, 142, 343, 787
BsmAI	GTCTC	3 cut(s)	48, 663, 825
BsmFI	GGGAC	2 cut(s)	260, 614
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	4 cut(s)	322, 469, 620, 705
Bsp1720I	GCTNAGC	2 cut(s)	8, 987
Bsp19I	CCATGG	1 cut(s)	498
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	1 cut(s)	264
BspCNI	CTCAG	3 cut(s)	630, 979, 1024
BspLI	GGNNCC	3 cut(s)	45, 739, 763
BspPI	GGATC	1 cut(s)	713
BspT107I	GGYRCC	2 cut(s)	737, 761
BsrI	ACTGG	3 cut(s)	45, 137, 783
BssECI	CCNNGG	2 cut(s)	498, 768
BssMI	GATC	4 cut(s)	322, 469, 620, 705
BssT1I	CCWWGG	2 cut(s)	498, 768
Bst2UI	CCWGG	3 cut(s)	458, 844, 873
Bst4CI	ACNGT	4 cut(s)	59, 892, 899, 930
Bst6I	CTCTTC	4 cut(s)	46, 123, 351, 726
BstC8I	GCNNGC	4 cut(s)	865, 869, 966, 1026
BstDEI	CTNAG	6 cut(s)	8, 25, 534, 617, 987, 1011
BstDSI	CCRYGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	113
BstH2I	RGCGCY	1 cut(s)	595
BstHHI	GCGC	1 cut(s)	594
BstKTI	GATC	4 cut(s)	325, 472, 623, 708
BstMAI	GTCTC	3 cut(s)	48, 663, 825
BstMBI	GATC	4 cut(s)	322, 469, 620, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	759, 864, 877
BstNI	CCWGG	3 cut(s)	458, 844, 873
BstSCI	CCNGG	3 cut(s)	456, 842, 871
BstSLI	GKGCMC	1 cut(s)	764
BstV1I	GCAGC	6 cut(s)	78, 383, 405, 476, 562, 867
Bsu36I	CCTNAGG	1 cut(s)	1011
BsuRI	GGCC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	498
BtsCI	GGATG	1 cut(s)	113
BtsIMutI	CAGTG	3 cut(s)	790, 897, 935
Cac8I	GCNNGC	4 cut(s)	865, 869, 966, 1026
CaiI	CAGNNNCTG	1 cut(s)	396
CfoI	GCGC	1 cut(s)	594
Cfr13I	GGNCC	2 cut(s)	454, 772
Csp6I	GTAC	3 cut(s)	435, 738, 791
CviAII	CATG	4 cut(s)	17, 499, 613, 972
CviQI	GTAC	3 cut(s)	435, 738, 791
DdeI	CTNAG	6 cut(s)	8, 25, 534, 617, 987, 1011
DpnI	GATC	4 cut(s)	324, 471, 622, 707
DpnII	GATC	4 cut(s)	322, 469, 620, 705
Eam1104I	CTCTTC	4 cut(s)	46, 123, 351, 726
EarI	CTCTTC	4 cut(s)	46, 123, 351, 726
Eco130I	CCWWGG	2 cut(s)	498, 768
Eco47I	GGWCC	2 cut(s)	454, 772
Eco47III	AGCGCT	1 cut(s)	593
Eco57I	CTGAAG	1 cut(s)	471
Eco81I	CCTNAGG	1 cut(s)	1011
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	3 cut(s)	456, 842, 871
EcoT14I	CCWWGG	2 cut(s)	498, 768
ErhI	CCWWGG	2 cut(s)	498, 768
FaeI	CATG	4 cut(s)	20, 502, 616, 975
FaqI	GGGAC	2 cut(s)	260, 614
FatI	CATG	4 cut(s)	16, 498, 612, 971
FauNDI	CATATG	1 cut(s)	854
Fnu4HI	GCNGC	6 cut(s)	67, 394, 397, 465, 551, 881
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	6 cut(s)	67, 394, 397, 465, 551, 881
FspBI	CTAG	1 cut(s)	794
GlaI	GCGC	1 cut(s)	593
GluI	GCNGC	6 cut(s)	67, 394, 397, 465, 551, 881
HaeII	RGCGCY	1 cut(s)	595
HaeIII	GGCC	1 cut(s)	264
HhaI	GCGC	1 cut(s)	594
Hin1II	CATG	4 cut(s)	20, 502, 616, 975
Hin6I	GCGC	1 cut(s)	592
HinP1I	GCGC	1 cut(s)	592
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HindIII	AAGCTT	1 cut(s)	966
HinfI	GANTC	4 cut(s)	119, 174, 562, 922
HphI	GGTGA	2 cut(s)	205, 524
Hpy166II	GTNNAC	2 cut(s)	888, 895
Hpy188I	TCNGA	3 cut(s)	620, 800, 1037
Hpy188III	TCNNGA	3 cut(s)	78, 329, 1013
Hpy8I	GTNNAC	2 cut(s)	888, 895
HpyAV	CCTTC	7 cut(s)	220, 348, 495, 539, 564, 579, 716
HpyCH4III	ACNGT	4 cut(s)	59, 892, 899, 930
HpyCH4V	TGCA	6 cut(s)	272, 441, 718, 863, 964, 1043
HpyF10VI	GCNNNNNNNGC	3 cut(s)	759, 864, 877
HpyF3I	CTNAG	6 cut(s)	8, 25, 534, 617, 987, 1011
Hsp92II	CATG	4 cut(s)	20, 502, 616, 975
HspAI	GCGC	1 cut(s)	592
KpnI	GGTACC	1 cut(s)	741
Kzo9I	GATC	4 cut(s)	322, 469, 620, 705
LmnI	GCTCC	4 cut(s)	4, 49, 63, 983
Lsp1109I	GCAGC	6 cut(s)	78, 383, 405, 476, 562, 867
MaeI	CTAG	1 cut(s)	794
MalI	GATC	4 cut(s)	324, 471, 622, 707
MboI	GATC	4 cut(s)	322, 469, 620, 705
MfeI	CAATTG	1 cut(s)	624
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	5 cut(s)	153, 164, 367, 624, 802
MmeI	TCCRAC	3 cut(s)	41, 151, 387
MseI	TTAA	4 cut(s)	156, 285, 755, 1004
MspA1I	CMGCKG	1 cut(s)	396
MspR9I	CCNGG	3 cut(s)	458, 844, 873
MunI	CAATTG	1 cut(s)	624
Mva1269I	GAATGC	1 cut(s)	209
MvaI	CCWGG	3 cut(s)	458, 844, 873
MwoI	GCNNNNNNNGC	3 cut(s)	759, 864, 877
NcoI	CCATGG	1 cut(s)	498
NdeI	CATATG	1 cut(s)	854
NdeII	GATC	4 cut(s)	322, 469, 620, 705
NlaIII	CATG	4 cut(s)	20, 502, 616, 975
NlaIV	GGNNCC	3 cut(s)	45, 739, 763
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	119, 174, 562, 922
PkrI	GCNGC	6 cut(s)	68, 395, 398, 466, 552, 882
PpuMI	RGGWCCY	1 cut(s)	772
PshBI	ATTAAT	2 cut(s)	156, 285
PsiI	TTATAA	1 cut(s)	938
Psp5II	RGGWCCY	1 cut(s)	772
Psp6I	CCWGG	3 cut(s)	456, 842, 871
PspGI	CCWGG	3 cut(s)	456, 842, 871
PspN4I	GGNNCC	3 cut(s)	45, 739, 763
PspPI	GGNCC	2 cut(s)	454, 772
PspPPI	RGGWCCY	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	396
RsaI	GTAC	3 cut(s)	436, 739, 792
RsaNI	GTAC	3 cut(s)	435, 738, 791
SaqAI	TTAA	4 cut(s)	156, 285, 755, 1004
SatI	GCNGC	6 cut(s)	67, 394, 397, 465, 551, 881
Sau3AI	GATC	4 cut(s)	322, 469, 620, 705
Sau96I	GGNCC	2 cut(s)	454, 772
ScaI	AGTACT	1 cut(s)	436
ScrFI	CCNGG	3 cut(s)	458, 844, 873
SduI	GDGCHC	1 cut(s)	764
SinI	GGWCC	2 cut(s)	454, 772
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
SpeI	ACTAGT	1 cut(s)	793
Sse9I	AATT	5 cut(s)	153, 164, 367, 624, 802
SsiI	CCGC	1 cut(s)	604
SspMI	CTAG	1 cut(s)	794
StyD4I	CCNGG	3 cut(s)	456, 842, 871
StyI	CCWWGG	2 cut(s)	498, 768
TaaI	ACNGT	4 cut(s)	59, 892, 899, 930
TaqI	TCGA	1 cut(s)	117
TasI	AATT	5 cut(s)	153, 164, 367, 624, 802
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	4 cut(s)	119, 174, 562, 922
Tru1I	TTAA	4 cut(s)	156, 285, 755, 1004
Tru9I	TTAA	4 cut(s)	156, 285, 755, 1004
TscAI	CASTG	3 cut(s)	790, 897, 935
TseI	GCWGC	6 cut(s)	66, 393, 396, 464, 550, 880
TspDTI	ATGAA	3 cut(s)	369, 701, 960
TspRI	CASTG	3 cut(s)	790, 897, 935
VpaK11BI	GGWCC	2 cut(s)	454, 772
VspI	ATTAAT	2 cut(s)	156, 285
XapI	RAATTY	1 cut(s)	802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	817
XspI	CTAG	1 cut(s)	794
ZrmI	AGTACT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.