Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

44159472 .. 44161337

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G540400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGCTCAGTGAGCATAGTTTCTTAGAGGAGCTTTTAGCTCTAAGAAGAGACAGTACATGGGAAACCATTCCAACAGAAATGAATGAGTTCTTGTCCAGTAGTGGCAGTTGGGGTAATTTTGGTTACCTTGATCAAAACCCTCCAACTTTCTTCCCAAACTCTTCTTGCACCCAAGAATTCTCACCTCCATTTGAGCCAAACTTAAGCAACTGCTACAACAACAACAACAGCACCTTCAATGAAGTCTACTATCCCTTAGGCTTTGGTGCTGGTGAAGATGGCCTCTCAGCTCAACAGCAGCTCACTGACTCATCCTACAACACACTCGATACGCCGCCGTTTCCGGTCCAAGAAGACAATCCATGGTCCATGCTTGAAGAAGAAGAGTTGGGTTTGCTTGGGGATGAAATACACAACTTGGAGACCCAAGCTGAAGCAGCCTGCAAAATGGAGCCAATTCAGTCCCCTGATCAAGTCCCAGTTTTCAACATGGGGATGTGTGAGGAGAGAAATAACAGAGGTAATATCAAGAAGTTGCAGGGACAGCCTTCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGAGATTAAACGACCGCCTTTCGATGCTAAGATCAATTGTGCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACCATAGATTACATGAAGGAGCTCCTGGAGAGAATCAACAATTTGCAACAAGAAATTGAAACAGATGCAGATCAGTTAAATGTGATGAGCCTTTTCAAGGATGTGAAACCAAATGAAATGTTAGTGAGAAACTCACCAAAGTTTGATGTGCAAAGGAGGAATGTGGACACCAGAATTGACATTTGCTGTGCAGGAAAGCCAGGACTGTTATTATCTACTGTGTCTACCTTGGAAGCATTAGGTCTTGAGATTCAACAGTGTGTTATTAGTTGCTTCAATGATTTTGCAATGCAAGCTTCTTGCTCAGAGGATTTTGATCAGAGAACAACAGTAACTTCTGAAGACATAAAGCAAGCACTGTTTAGAAATGCAGGATATGGAGGAAGATGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

355

Amino Acids

40.17

Weight (kDa)

4.57

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	249, 893
AciI	CCGC	2 cut(s)	338, 601
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	456, 1029
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	766
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	8 cut(s)	241, 380, 490, 555, 728, 766, 923, 946
AjnI	CCWGG	2 cut(s)	693, 868
AluBI	AGCT	8 cut(s)	7, 34, 41, 293, 304, 434, 691, 965
AluI	AGCT	8 cut(s)	7, 34, 41, 293, 304, 434, 691, 965
Alw21I	GWGCWC	2 cut(s)	9, 693
Alw26I	GTCTC	3 cut(s)	45, 419, 660
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	301, 440
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	69, 89
AspS9I	GGNCC	2 cut(s)	349, 369
AsuHPI	GGTGA	3 cut(s)	177, 287, 795
AvaII	GGWCC	2 cut(s)	349, 369
AxyI	CCTNAGG	1 cut(s)	259
BaeGI	GKGCMC	1 cut(s)	630
BanII	GRGCYC	2 cut(s)	9, 693
BarI	GAAGNNNNNNTAC	2 cut(s)	40, 72
BbsI	GAAGAC	2 cut(s)	363, 1017
Bbv12I	GWGCWC	2 cut(s)	9, 693
BbvI	GCAGC	2 cut(s)	313, 452
BccI	CCATC	2 cut(s)	275, 637
BceAI	ACGGC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	695, 870
BclI	TGATCA	3 cut(s)	133, 472, 985
BcoDI	GTCTC	3 cut(s)	45, 419, 660
BfrI	CTTAAG	1 cut(s)	205
BisI	GCNGC	3 cut(s)	302, 338, 441
BlsI	GCNGC	3 cut(s)	303, 339, 442
Bme1390I	CCNGG	2 cut(s)	695, 870
Bme18I	GGWCC	2 cut(s)	349, 369
BmgT120I	GGNCC	2 cut(s)	349, 369
BmiI	GGNNCC	1 cut(s)	456
BmrFI	CCNGG	2 cut(s)	695, 870
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	2 cut(s)	600, 724
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	2 cut(s)	363, 1017
BpmI	CTGGAG	1 cut(s)	716
BpuEI	CTTGAG	1 cut(s)	935
BsaBI	GATNNNNATC	2 cut(s)	738, 984
BsaI	GGTCTC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	365, 897
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	766
Bse1I	ACTGG	2 cut(s)	99, 482
Bse21I	CCTNAGG	1 cut(s)	259
Bse3DI	GCAATG	1 cut(s)	963
Bse8I	GATNNNNATC	2 cut(s)	738, 984
BseBI	CCWGG	2 cut(s)	695, 870
BseDI	CCNNGG	2 cut(s)	365, 897
BseGI	GGATG	4 cut(s)	314, 412, 504, 775
BseJI	GATNNNNATC	2 cut(s)	738, 984
BseLI	CCNNNNNNNGG	1 cut(s)	766
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	4 cut(s)	22, 303, 561, 987
BseNI	ACTGG	2 cut(s)	99, 482
BseRI	GAGGAG	2 cut(s)	44, 521
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	2 cut(s)	313, 452
BsgI	GTGCAG	1 cut(s)	879
Bsh1285I	CGRYCG	1 cut(s)	601
BshFI	GGCC	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	601
BsiHKAI	GWGCWC	2 cut(s)	9, 693
BsiSI	CCGG	1 cut(s)	347
BslFI	GGGAC	3 cut(s)	451, 464, 558
BslI	CCNNNNNNNGG	1 cut(s)	766
BsmAI	GTCTC	3 cut(s)	45, 419, 660
BsmFI	GGGAC	3 cut(s)	451, 464, 558
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	9, 630, 693
Bsp143I	GATC	5 cut(s)	133, 472, 617, 739, 985
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	2 cut(s)	338, 601
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	4 cut(s)	21, 302, 562, 986
BspLI	GGNNCC	1 cut(s)	456
BspTI	CTTAAG	1 cut(s)	205
BspTNI	GGTCTC	1 cut(s)	419
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	2 cut(s)	99, 482
BssECI	CCNNGG	2 cut(s)	365, 897
BssMI	GATC	5 cut(s)	133, 472, 617, 739, 985
BssT1I	CCWWGG	2 cut(s)	365, 897
Bst2UI	CCWGG	2 cut(s)	695, 870
Bst4CI	ACNGT	6 cut(s)	56, 876, 889, 927, 1000, 1029
Bst6I	CTCTTC	3 cut(s)	43, 169, 381
BstAFI	CTTAAG	1 cut(s)	205
BstC8I	GCNNGC	3 cut(s)	445, 963, 1023
BstDEI	CTNAG	8 cut(s)	8, 25, 44, 259, 289, 570, 614, 973
BstDSI	CCRYGG	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	764
BstF5I	GGATG	4 cut(s)	314, 412, 504, 775
BstKTI	GATC	5 cut(s)	136, 475, 620, 742, 988
BstMAI	GTCTC	3 cut(s)	45, 419, 660
BstMBI	GATC	5 cut(s)	133, 472, 617, 739, 985
BstMCI	CGRYCG	1 cut(s)	601
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 440, 547, 962
BstNI	CCWGG	2 cut(s)	695, 870
BstPI	GGTNACC	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	693, 868
BstSLI	GKGCMC	1 cut(s)	630
BstV1I	GCAGC	2 cut(s)	313, 452
BstV2I	GAAGAC	2 cut(s)	363, 1017
Bsu36I	CCTNAGG	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	4 cut(s)	314, 412, 504, 775
BtsIMutI	CAGTG	4 cut(s)	16, 306, 932, 1025
Cac8I	GCNNGC	3 cut(s)	445, 963, 1023
Cfr13I	GGNCC	2 cut(s)	349, 369
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	5 cut(s)	60, 366, 373, 493, 682
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	8 cut(s)	8, 25, 44, 259, 289, 570, 614, 973
DpnI	GATC	5 cut(s)	135, 474, 619, 741, 987
DpnII	GATC	5 cut(s)	133, 472, 617, 739, 985
Eam1104I	CTCTTC	3 cut(s)	43, 169, 381
EarI	CTCTTC	3 cut(s)	43, 169, 381
Ecl136II	GAGCTC	2 cut(s)	7, 691
Eco130I	CCWWGG	2 cut(s)	365, 897
Eco24I	GRGCYC	2 cut(s)	9, 693
Eco31I	GGTCTC	1 cut(s)	419
Eco47I	GGWCC	2 cut(s)	349, 369
Eco53kI	GAGCTC	2 cut(s)	7, 691
Eco57I	CTGAAG	2 cut(s)	456, 1029
Eco81I	CCTNAGG	1 cut(s)	259
Eco91I	GGTNACC	1 cut(s)	125
EcoICRI	GAGCTC	2 cut(s)	7, 691
EcoNI	CCTNNNNNAGG	1 cut(s)	764
EcoO65I	GGTNACC	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	2 cut(s)	693, 868
EcoT14I	CCWWGG	2 cut(s)	365, 897
EcoT38I	GRGCYC	2 cut(s)	9, 693
ErhI	CCWWGG	2 cut(s)	365, 897
FaeI	CATG	5 cut(s)	63, 369, 376, 496, 685
FaqI	GGGAC	3 cut(s)	451, 464, 558
FatI	CATG	5 cut(s)	59, 365, 372, 492, 681
FbaI	TGATCA	3 cut(s)	133, 472, 985
FblI	GTMKAC	2 cut(s)	249, 893
Fnu4HI	GCNGC	3 cut(s)	302, 338, 441
FokI	GGATG	4 cut(s)	301, 419, 511, 782
FriOI	GRGCYC	2 cut(s)	9, 693
Fsp4HI	GCNGC	3 cut(s)	302, 338, 441
GluI	GCNGC	3 cut(s)	302, 338, 441
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	347
Hin1II	CATG	5 cut(s)	63, 369, 376, 496, 685
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	4 cut(s)	311, 559, 702, 919
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	3 cut(s)	177, 287, 795
Hpy166II	GTNNAC	3 cut(s)	250, 835, 894
Hpy188I	TCNGA	3 cut(s)	976, 990, 1009
Hpy188III	TCNNGA	2 cut(s)	532, 914
Hpy8I	GTNNAC	3 cut(s)	250, 835, 894
HpyAV	CCTTC	3 cut(s)	247, 561, 679
HpyCH4III	ACNGT	6 cut(s)	56, 876, 889, 927, 1000, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 440, 547, 962
HpyF3I	CTNAG	8 cut(s)	8, 25, 44, 259, 289, 570, 614, 973
Hsp92II	CATG	5 cut(s)	63, 369, 376, 496, 685
Ksp22I	TGATCA	3 cut(s)	133, 472, 985
Kzo9I	GATC	5 cut(s)	133, 472, 617, 739, 985
LmnI	GCTCC	5 cut(s)	4, 31, 454, 688, 696
Lsp1109I	GCAGC	2 cut(s)	313, 452
LweI	GCATC	2 cut(s)	600, 724
MaeIII	GTNAC	2 cut(s)	125, 1000
MalI	GATC	5 cut(s)	135, 474, 619, 741, 987
MboI	GATC	5 cut(s)	133, 472, 617, 739, 985
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	3 cut(s)	9, 630, 693
MluCI	AATT	7 cut(s)	118, 179, 459, 621, 709, 723, 843
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	98, 170
MnlI	CCTC	9 cut(s)	22, 153, 198, 296, 499, 515, 819, 970, 1043
MroXI	GAANNNNTTC	2 cut(s)	69, 89
MseI	TTAA	3 cut(s)	206, 593, 746
MslI	CAYNNNNRTG	1 cut(s)	497
MspCI	CTTAAG	1 cut(s)	205
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	695, 870
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	2 cut(s)	695, 870
MwoI	GCNNNNNNNGC	4 cut(s)	13, 440, 547, 962
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	5 cut(s)	133, 472, 617, 739, 985
NlaIII	CATG	5 cut(s)	63, 369, 376, 496, 685
NlaIV	GGNNCC	1 cut(s)	456
PdmI	GAANNNNTTC	2 cut(s)	69, 89
PfeI	GAWTC	3 cut(s)	559, 702, 919
PfoI	TCCNGGA	1 cut(s)	693
PkrI	GCNGC	3 cut(s)	303, 339, 442
PleI	GAGTC	1 cut(s)	305
PpsI	GAGTC	1 cut(s)	305
Psp124BI	GAGCTC	2 cut(s)	9, 693
Psp6I	CCWGG	2 cut(s)	693, 868
PspEI	GGTNACC	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	693, 868
PspN4I	GGNNCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	349, 369
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
RseI	CAYNNNNRTG	1 cut(s)	497
SacI	GAGCTC	2 cut(s)	9, 693
SaqAI	TTAA	3 cut(s)	206, 593, 746
SatI	GCNGC	3 cut(s)	302, 338, 441
Sau3AI	GATC	5 cut(s)	133, 472, 617, 739, 985
Sau96I	GGNCC	2 cut(s)	349, 369
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	695, 870
SduI	GDGCHC	3 cut(s)	9, 630, 693
SfaNI	GCATC	2 cut(s)	600, 724
SinI	GGWCC	2 cut(s)	349, 369
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	2 cut(s)	205, 914
SmoI	CTYRAG	2 cut(s)	205, 914
Sse9I	AATT	7 cut(s)	118, 179, 459, 621, 709, 723, 843
SsiI	CCGC	2 cut(s)	338, 601
SstI	GAGCTC	2 cut(s)	9, 693
StyD4I	CCNGG	2 cut(s)	693, 868
StyI	CCWWGG	2 cut(s)	365, 897
TaaI	ACNGT	6 cut(s)	56, 876, 889, 927, 1000, 1029
TaqI	TCGA	2 cut(s)	330, 608
TasI	AATT	7 cut(s)	118, 179, 459, 621, 709, 723, 843
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	3 cut(s)	559, 702, 919
Tru1I	TTAA	3 cut(s)	206, 593, 746
Tru9I	TTAA	3 cut(s)	206, 593, 746
TscAI	CASTG	4 cut(s)	16, 313, 932, 1032
TseI	GCWGC	2 cut(s)	301, 440
TspDTI	ATGAA	5 cut(s)	98, 258, 423, 698, 798
TspRI	CASTG	4 cut(s)	16, 313, 932, 1032
Vha464I	CTTAAG	1 cut(s)	205
VpaK11BI	GGWCC	2 cut(s)	349, 369
XagI	CCTNNNNNAGG	1 cut(s)	764
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	2 cut(s)	249, 893
XmnI	GAANNNNTTC	2 cut(s)	69, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.