Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

24545889 .. 24547837

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g33810.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGCTCAATGAGCATAGTTTCTTGGAGGAGCTATTAGCTCTTAGAAGAGACAGTTCATGGGAAACCATTCCCCCAGAAATGAATGAGTTCTTGTCCAGTAGCACCTGGAGTAGTTTTGATTACTTTGACAATCAAAACCTGTCTCCCTTTTTTCCAAACTCTTCTTCCAGCCAAGAATTCTCACCTCCATTTGAGCCAAACTTGAACAACTGCCATAACAACACCACCTTCAATGAAGTGTACTATCCCCTAGGCTTTGGTACTGACGAACTACTCTCAGCCCCACAGCTCACCACTGATTCATCTTACACCACACTGGGTGATACGCCGCCGTTTCCCGTTCAGGAAGACAACAATCCATGGTCCATGCTCGAACAAGAAGAGCTGAGCATACTTGGAGATGAAATGCACAACTTGGAGACTCAGGCTGCTGCTTGTAAAGTAGAGCCTACTCAGTCCTCCTCCCCTGAAGCAGCTCCAGTGTTCAACATGGGTTTGTGTGTGGAAAGAAACAGCAGAGCTAGTAAGAAGTTGCAGGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGGTTGAATGACCGCCTTTCGATGCTAAGATCAATCGTTCCCAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACCATTGATTACATGAAAGAACTCCTGGACAGAATCAACAACTTGCAGCACGGAATTGAAGAAGGGGGTTCAGATCAGTTGAATGTGATGAGACTTATCAAGGATATGAAACCAAATGAAATGCTAGTGAGGAACTCACCCAAGTTTGATGTTCAAAGGAGGAATGTGGACACAAGGATTGAGATTTGCTGTGCAGGAAAGCCAGGTTTATTATTATCCACAGTTACTACCTTGGAAGCATTAGGCCTTGAGATTAAACAGTGTGTCATTAGCTGCTTTAATGATTTTGCCATGCAAGCTTCATGTTCAGAGGGTTTGGATCAGAGAACACTGGTAACTTCTGAGGACATGAAGCAAGCTCTGTTTAGAAATGCTGGGTATGGAGGAAGGTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

355

Amino Acids

40.01

Weight (kDa)

4.85

Isoelectric Point (pI)

65.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	188 - 230	7.2e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	279 - 345	1.1e-06	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	332, 586, 598
AclWI	GGATC	1 cut(s)	993
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	492
AdeI	CACNNNGTG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	245, 265
AgsI	TTSAA	7 cut(s)	208, 235, 490, 592, 725, 748, 821
AjnI	CCWGG	3 cut(s)	107, 690, 868
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	5 cut(s)	45, 150, 416, 657, 751
AlwI	GGATC	1 cut(s)	993
AoxI	GGCC	1 cut(s)	910
ApeKI	GCWGC	6 cut(s)	431, 434, 476, 544, 712, 939
ApoI	RAATTY	1 cut(s)	179
Asp700I	GAANNNNTTC	2 cut(s)	69, 89
AspA2I	CCTAGG	1 cut(s)	253
AspS9I	GGNCC	1 cut(s)	366
AsuHPI	GGTGA	4 cut(s)	177, 286, 335, 795
AvaII	GGWCC	1 cut(s)	366
AvrII	CCTAGG	1 cut(s)	253
BanII	GRGCYC	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	6 cut(s)	418, 421, 488, 556, 724, 926
BccI	CCATC	2 cut(s)	556, 634
BceAI	ACGGC	1 cut(s)	319
BciT130I	CCWGG	3 cut(s)	109, 692, 870
BcoDI	GTCTC	5 cut(s)	45, 150, 416, 657, 751
BfaI	CTAG	3 cut(s)	254, 525, 791
BisI	GCNGC	7 cut(s)	332, 432, 435, 477, 545, 713, 940
BlnI	CCTAGG	1 cut(s)	253
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	7 cut(s)	333, 433, 436, 478, 546, 714, 941
Bme1390I	CCNGG	3 cut(s)	109, 692, 870
Bme18I	GGWCC	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	366
BmrFI	CCNGG	3 cut(s)	109, 692, 870
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	329
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	2 cut(s)	130, 465
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	935
BsaJI	CCNNGG	3 cut(s)	253, 362, 897
Bse1I	ACTGG	4 cut(s)	99, 324, 482, 1002
BseBI	CCWGG	3 cut(s)	109, 692, 870
BseDI	CCNNGG	3 cut(s)	253, 362, 897
BseMII	CTCAG	6 cut(s)	294, 380, 440, 470, 558, 999
BseNI	ACTGG	4 cut(s)	99, 324, 482, 1002
BseRI	GAGGAG	2 cut(s)	44, 454
BseXI	GCAGC	6 cut(s)	418, 421, 488, 556, 724, 926
BseYI	CCCAGC	1 cut(s)	1040
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	1 cut(s)	912
BsiHKAI	GWGCWC	1 cut(s)	9
BsmAI	GTCTC	5 cut(s)	45, 150, 416, 657, 751
BsnI	GGCC	1 cut(s)	912
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	614, 739, 985
Bsp1720I	GCTNAGC	1 cut(s)	389
Bsp19I	CCATGG	1 cut(s)	362
BspACI	CCGC	3 cut(s)	332, 586, 598
BspANI	GGCC	1 cut(s)	912
BspCNI	CTCAG	6 cut(s)	293, 381, 439, 469, 559, 1000
BspPI	GGATC	1 cut(s)	993
BspQI	GCTCTTC	1 cut(s)	378
BsrI	ACTGG	4 cut(s)	99, 324, 482, 1002
BssECI	CCNNGG	3 cut(s)	253, 362, 897
BssMI	GATC	3 cut(s)	614, 739, 985
BssT1I	CCWWGG	3 cut(s)	253, 362, 897
Bst2UI	CCWGG	3 cut(s)	109, 692, 870
Bst4CI	ACNGT	3 cut(s)	56, 889, 927
Bst6I	CTCTTC	3 cut(s)	43, 169, 378
BstC8I	GCNNGC	2 cut(s)	963, 1023
BstDEI	CTNAG	8 cut(s)	44, 280, 389, 426, 456, 567, 611, 1008
BstDSI	CCRYGG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	617, 742, 988
BstMAI	GTCTC	5 cut(s)	45, 150, 416, 657, 751
BstMBI	GATC	3 cut(s)	614, 739, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 544, 962
BstNI	CCWGG	3 cut(s)	109, 692, 870
BstSCI	CCNGG	3 cut(s)	107, 690, 868
BstV1I	GCAGC	6 cut(s)	418, 421, 488, 556, 724, 926
BstV2I	GAAGAC	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	912
BtgI	CCRYGG	1 cut(s)	362
BtsIMutI	CAGTG	5 cut(s)	297, 317, 489, 932, 995
Cac8I	GCNNGC	2 cut(s)	963, 1023
Cfr13I	GGNCC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	244, 264
CviAII	CATG	8 cut(s)	60, 363, 370, 493, 679, 958, 969, 1015
CviQI	GTAC	2 cut(s)	244, 264
DdeI	CTNAG	8 cut(s)	44, 280, 389, 426, 456, 567, 611, 1008
DpnI	GATC	3 cut(s)	616, 741, 987
DpnII	GATC	3 cut(s)	614, 739, 985
DraIII	CACNNNGTG	1 cut(s)	323
Eam1104I	CTCTTC	3 cut(s)	43, 169, 378
EarI	CTCTTC	3 cut(s)	43, 169, 378
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	3 cut(s)	253, 362, 897
Eco147I	AGGCCT	1 cut(s)	912
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	366
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	1 cut(s)	7
EcoRI	GAATTC	1 cut(s)	179
EcoRII	CCWGG	3 cut(s)	107, 690, 868
EcoT14I	CCWWGG	3 cut(s)	253, 362, 897
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	3 cut(s)	253, 362, 897
FaeI	CATG	8 cut(s)	63, 366, 373, 496, 682, 961, 972, 1018
FatI	CATG	8 cut(s)	59, 362, 369, 492, 678, 957, 968, 1014
Fnu4HI	GCNGC	7 cut(s)	332, 432, 435, 477, 545, 713, 940
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	7 cut(s)	332, 432, 435, 477, 545, 713, 940
FspBI	CTAG	3 cut(s)	254, 525, 791
GluI	GCNGC	7 cut(s)	332, 432, 435, 477, 545, 713, 940
GsaI	CCCAGC	1 cut(s)	1044
GsuI	CTGGAG	2 cut(s)	130, 465
HaeIII	GGCC	1 cut(s)	912
Hin1II	CATG	8 cut(s)	63, 366, 373, 496, 682, 961, 972, 1018
HindIII	AAGCTT	1 cut(s)	963
HinfI	GANTC	4 cut(s)	302, 424, 556, 699
HphI	GGTGA	4 cut(s)	177, 286, 335, 795
Hpy166II	GTNNAC	2 cut(s)	244, 835
Hpy188I	TCNGA	4 cut(s)	739, 976, 990, 1009
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	2 cut(s)	244, 835
HpyAV	CCTTC	3 cut(s)	241, 722, 1047
HpyCH4III	ACNGT	3 cut(s)	56, 889, 927
HpyCH4V	TGCA	5 cut(s)	412, 538, 712, 860, 961
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 544, 962
HpyF3I	CTNAG	8 cut(s)	44, 280, 389, 426, 456, 567, 611, 1008
Hsp92II	CATG	8 cut(s)	63, 366, 373, 496, 682, 961, 972, 1018
Kzo9I	GATC	3 cut(s)	614, 739, 985
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	3 cut(s)	4, 31, 484
Lsp1109I	GCAGC	6 cut(s)	418, 421, 488, 556, 724, 926
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	3 cut(s)	254, 525, 791
MaeIII	GTNAC	2 cut(s)	889, 1000
MalI	GATC	3 cut(s)	616, 741, 987
MboI	GATC	3 cut(s)	614, 739, 985
MboII	GAAGA	9 cut(s)	60, 156, 159, 362, 395, 585, 588, 591, 737
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	2 cut(s)	179, 720
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	9 cut(s)	22, 198, 472, 475, 789, 819, 970, 1003, 1043
MroXI	GAANNNNTTC	2 cut(s)	69, 89
MseI	TTAA	2 cut(s)	921, 945
MspR9I	CCNGG	3 cut(s)	109, 692, 870
MvaI	CCWGG	3 cut(s)	109, 692, 870
MwoI	GCNNNNNNNGC	3 cut(s)	13, 544, 962
NcoI	CCATGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	614, 739, 985
NlaIII	CATG	8 cut(s)	63, 366, 373, 496, 682, 961, 972, 1018
PceI	AGGCCT	1 cut(s)	912
PciSI	GCTCTTC	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	69, 89
PfeI	GAWTC	3 cut(s)	302, 556, 699
PfoI	TCCNGGA	1 cut(s)	690
PkrI	GCNGC	7 cut(s)	333, 433, 436, 478, 546, 714, 941
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	107, 690, 868
PspFI	CCCAGC	1 cut(s)	1040
PspGI	CCWGG	3 cut(s)	107, 690, 868
PspPI	GGNCC	1 cut(s)	366
RsaI	GTAC	2 cut(s)	245, 265
RsaNI	GTAC	2 cut(s)	244, 264
SacI	GAGCTC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	921, 945
SatI	GCNGC	7 cut(s)	332, 432, 435, 477, 545, 713, 940
Sau3AI	GATC	3 cut(s)	614, 739, 985
Sau96I	GGNCC	1 cut(s)	366
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	3 cut(s)	109, 692, 870
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	597
SinI	GGWCC	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	2 cut(s)	179, 720
SseBI	AGGCCT	1 cut(s)	912
SsiI	CCGC	3 cut(s)	332, 586, 598
SspMI	CTAG	3 cut(s)	254, 525, 791
SstI	GAGCTC	1 cut(s)	9
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	3 cut(s)	107, 690, 868
StyI	CCWWGG	3 cut(s)	253, 362, 897
TaaI	ACNGT	3 cut(s)	56, 889, 927
TaqI	TCGA	2 cut(s)	375, 605
TasI	AATT	2 cut(s)	179, 720
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	334
TfiI	GAWTC	3 cut(s)	302, 556, 699
Tru1I	TTAA	2 cut(s)	921, 945
Tru9I	TTAA	2 cut(s)	921, 945
TscAI	CASTG	5 cut(s)	304, 324, 489, 932, 1002
TseI	GCWGC	6 cut(s)	431, 434, 476, 544, 712, 939
TspGWI	ACGGA	1 cut(s)	732
TspRI	CASTG	5 cut(s)	304, 324, 489, 932, 1002
VpaK11BI	GGWCC	1 cut(s)	366
XapI	RAATTY	1 cut(s)	179
XmaJI	CCTAGG	1 cut(s)	253
XmnI	GAANNNNTTC	2 cut(s)	69, 89
XspI	CTAG	3 cut(s)	254, 525, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.