Rorug02G0164000

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
14607563 .. 14612217
4655 bp
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UTR
Exon/CDS
Intron
Rorug02G0164000.1

Sequence Viewer

Length: 1599 bp
ATGTCGTTCTCCCTATTCTCATCGGCGCAACCGCAGCAAACGCCGCAGCCACAATCCTCCCTCTTCCAAACCCCAAGCCTCTTCCAAACCCAACAATCCCCAAACCCCTTTCAGCAAACCCAGCAATCCCCAAACCCCTTCCAGCAATCCCCGAGCCTTTTTCAACAAACTCAGCAGTCCCCGAGTCCTTTTCAGCAAAGCACTTCCTTGTTCTCGCAACCCCAGCAGCAGCAGCAGCAACAGTCGCCGTTTCAGCCGCAGCAGTTTCAGTCTCAGTCGCCGCTTCAATTTCAGCCGCCGCCGCCGCAGCAGCAGCAGCAGCAGCAGCAACAGTTGTTTTTGTTTACTAATGACAAGACTCCGGCGAGTTACGGCACCAAGTGGGCCGATTTACACCCCGATTCGCAGAAGATTCTGCTCCAGATTGAGGAACGCATACTGGGGTACAGGGATGAGAGCCAAAGGCTGGATCAGTCTAGTCGTCTCTACGATTCTTCAGTTTCCAATGACGGGTTCGAGCAGGATGCAAGTCGTATCATTCAGGAGCTTGGGGGAATTGGTACTGACATGGACCGACAGAAAGCTCTGCTGCAGGAGCTGATGGCTACCGTGAAAGAGATGTTACGGAACAGCGAGGTTGCTGTTCGTTCTTTCATGATGCTACGTCCAAGGTTTCTTCGTCCAAATGCAGGAGGTACTTCAAATGGCACAGCAGCGTCACAGGCTCCTGGAGCAACAGTAACACCAGGCTCAACTAGTCAACCAACAACTACTTCTATAGTTCCAGTTTTTGACTTCTACAATGGAGTTCCAAGGAAACCATCCCCCTTCTTACAGCACACAATTGCAAGATTTGAGAAGTATCTTGGTGAGTGCCGCCAATGGATTGAAGAAATAGAGCAGCTCCTTTTAAATTCAGAGAGGAACTCTTCCAATGATGGATCCTCATTGTTGCAATCTCTCCCAAAAGTCATGTCAAATGTGCATGACTTTTTTGTTCATGTGGCTGCTAAGGTGGAGAGTATTCATCAGTACATTGTATCCATGAAAGCCGCTTATCTTGCTAACCAGCGTCGCCTAGGGGATGGGAATGACCCATTTCTTGAGGCTGATAGGCGGGAAACAGCAAGGCAAGAAGCTGCTGCTAAGAGAGTGCATCCAACTTTGCATTTACCTGCAATTTCACAACCATCAACACAAGTGGCTGGATTGTTGGCTAGCTCAGGAAGTCAGGCGGCATCAACAGCATCAACAGCTCCACAGACATCTGCAGCTACTACAACAGCTTCATCTGGGAGTGCATTCTCACTTTTCAGTACACCTTCTGCTCCATCTTCTTCTTCCATGGCTTCATCTTTGTTTGCAACACCAACCACTCCTGCTCCAGTATCTTCTCTTTTTGGACCATCATCTGCTACGCCCCAGACATCAACTGCTTCTCAGCTAGGCAATACTGCTCAGGCCTTGGGTTCTACTACTCCTGTGGGAGGTTCATTATTTTCTACTCCATTTGCTTCCGGTCCTGCAACATCATTTGGGTCTAGCTTTGGGGCTGCAACGAAATCAACAAAGCCAAAAGCTCGGCCTGGCCGACGTTAG

Protein Analysis

532

Amino Acids

57.58

Weight (kDa)

9.11

Isoelectric Point (pI)

78.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nucleoporin_FG2 PF15967 274 - 383 6.9e-07 Nucleoporin FG repeated region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1183
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 466
AclWI GGATC 3 cut(s) 477, 936, 949
AcoI YGGCCR 1 cut(s) 1588
AcsI RAATTY 1 cut(s) 913
AcuI CTGAAG 1 cut(s) 480
AdeI CACNNNGTG 1 cut(s) 381
AfaI GTAC 5 cut(s) 446, 562, 697, 1034, 1318
AfiI CCNNNNNNNGG 5 cut(s) 427, 466, 510, 689, 1487
AgsI TTSAA 4 cut(s) 164, 287, 702, 890
AhlI ACTAGT 1 cut(s) 755
AjnI CCWGG 3 cut(s) 727, 745, 1585
AjuI GAANNNNNNNTTGG 4 cut(s) 497, 529, 757, 789
Alw26I GTCTC 2 cut(s) 276, 488
AlwI GGATC 3 cut(s) 477, 936, 949
AlwNI CAGNNNCTG 1 cut(s) 598
Ama87I CYCGRG 2 cut(s) 151, 181
AoxI GGCC 4 cut(s) 384, 1461, 1583, 1588
ApoI RAATTY 1 cut(s) 913
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AspA2I CCTAGG 1 cut(s) 1078
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 4 cut(s) 384, 571, 1403, 1520
AsuHPI GGTGA 1 cut(s) 881
AsuNHI GCTAGC 1 cut(s) 1217
AvaI CYCGRG 2 cut(s) 151, 181
AvaII GGWCC 3 cut(s) 571, 1403, 1520
AvrII CCTAGG 1 cut(s) 1078
BamHI GGATCC 1 cut(s) 941
BanI GGYRCC 1 cut(s) 374
BccI CCATC 7 cut(s) 595, 829, 932, 1079, 1198, 1339, 1414
BceAI ACGGC 2 cut(s) 232, 388
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 3 cut(s) 729, 747, 1587
BciVI GTATCC 1 cut(s) 1051
BcoDI GTCTC 2 cut(s) 276, 488
BcuI ACTAGT 1 cut(s) 755
BfaI CTAG 6 cut(s) 477, 756, 1079, 1218, 1445, 1542
BfmI CTRYAG 3 cut(s) 590, 777, 1269
BfuAI ACCTGC 1 cut(s) 1183
BfuI GTATCC 1 cut(s) 1051
BlnI CCTAGG 1 cut(s) 1078
Bme1390I CCNGG 3 cut(s) 729, 747, 1587
Bme18I GGWCC 3 cut(s) 571, 1403, 1520
BmeT110I CYCGRG 2 cut(s) 151, 181
BmgT120I GGNCC 4 cut(s) 384, 571, 1403, 1520
BmiI GGNNCC 3 cut(s) 376, 726, 943
BmrFI CCNGG 3 cut(s) 729, 747, 1587
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 5 cut(s) 514, 648, 1165, 1247, 1256
BmtI GCTAGC 1 cut(s) 1221
BmuI ACTGGG 1 cut(s) 449
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpmI CTGGAG 3 cut(s) 404, 750, 1368
Bpu10I CCTNAGC 3 cut(s) 1011, 1222, 1458
BpuEI CTTGAG 1 cut(s) 1124
BsaJI CCNNGG 5 cut(s) 668, 812, 1078, 1344, 1464
BsaWI WCCGGW 1 cut(s) 1517
BsaXI ACNNNNNCTCC 4 cut(s) 723, 753, 1366, 1396
Bsc4I CCNNNNNNNGG 5 cut(s) 427, 466, 510, 689, 1487
Bse1I ACTGG 3 cut(s) 444, 785, 1385
BseBI CCWGG 3 cut(s) 729, 747, 1587
BseDI CCNNGG 5 cut(s) 668, 812, 1078, 1344, 1464
BseGI GGATG 5 cut(s) 457, 529, 821, 1090, 1156
BseLI CCNNNNNNNGG 5 cut(s) 427, 466, 510, 689, 1487
BseMII CTCAG 5 cut(s) 185, 287, 1236, 1454, 1472
BseNI ACTGG 3 cut(s) 444, 785, 1385
BseYI CCCAGC 2 cut(s) 120, 222
BshFI GGCC 4 cut(s) 386, 1463, 1585, 1590
BshNI GGYRCC 1 cut(s) 374
BsiHKCI CYCGRG 2 cut(s) 151, 181
BsiSI CCGG 2 cut(s) 362, 1518
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 5 cut(s) 427, 466, 510, 689, 1487
BsmAI GTCTC 2 cut(s) 276, 488
BsmBI CGTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 1 cut(s) 1301
BsnI GGCC 4 cut(s) 386, 1463, 1585, 1590
BsoBI CYCGRG 2 cut(s) 151, 181
Bsp143I GATC 2 cut(s) 469, 941
Bsp19I CCATGG 1 cut(s) 1344
BspANI GGCC 4 cut(s) 386, 1463, 1585, 1590
BspCNI CTCAG 5 cut(s) 184, 286, 1235, 1453, 1471
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 3 cut(s) 376, 726, 943
BspMAI CTGCAG 2 cut(s) 594, 1273
BspMI ACCTGC 1 cut(s) 1183
BspOI GCTAGC 1 cut(s) 1221
BspPI GGATC 3 cut(s) 477, 936, 949
BspT107I GGYRCC 1 cut(s) 374
BsrI ACTGG 3 cut(s) 444, 785, 1385
BssECI CCNNGG 5 cut(s) 668, 812, 1078, 1344, 1464
BssMI GATC 2 cut(s) 469, 941
BssT1I CCWWGG 5 cut(s) 668, 812, 1078, 1344, 1464
Bst2UI CCWGG 3 cut(s) 729, 747, 1587
Bst4CI ACNGT 4 cut(s) 243, 333, 610, 739
Bst6I CTCTTC 3 cut(s) 68, 86, 934
BstC8I GCNNGC 1 cut(s) 1219
BstDEI CTNAG 7 cut(s) 171, 273, 1011, 1146, 1222, 1440, 1458
BstDSI CCRYGG 1 cut(s) 1344
BstENI CCTNNNNNAGG 1 cut(s) 1485
BstF5I GGATG 5 cut(s) 457, 529, 821, 1090, 1156
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 472, 944
BstMAI GTCTC 2 cut(s) 276, 488
BstMBI GATC 2 cut(s) 469, 941
BstNI CCWGG 3 cut(s) 729, 747, 1587
BstSCI CCNGG 3 cut(s) 727, 745, 1585
BstSFI CTRYAG 3 cut(s) 590, 777, 1269
BstX2I RGATCY 1 cut(s) 941
BstYI RGATCY 1 cut(s) 941
BsuI GTATCC 1 cut(s) 1051
BsuRI GGCC 4 cut(s) 386, 1463, 1585, 1590
BtgI CCRYGG 1 cut(s) 1344
BtsCI GGATG 5 cut(s) 457, 529, 821, 1090, 1156
BveI ACCTGC 1 cut(s) 1183
Cac8I GCNNGC 1 cut(s) 1219
CaiI CAGNNNCTG 1 cut(s) 598
CciI TCATGA 1 cut(s) 654
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 4 cut(s) 384, 571, 1403, 1520
CseI GACGC 2 cut(s) 705, 1061
Csp6I GTAC 5 cut(s) 445, 561, 696, 1033, 1317
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviAII CATG 7 cut(s) 568, 655, 973, 986, 1001, 1045, 1345
CviQI GTAC 5 cut(s) 445, 561, 696, 1033, 1317
DdeI CTNAG 7 cut(s) 171, 273, 1011, 1146, 1222, 1440, 1458
DpnI GATC 2 cut(s) 471, 943
DpnII GATC 2 cut(s) 469, 941
DraI TTTAAA 1 cut(s) 912
DraIII CACNNNGTG 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 1588
Eam1104I CTCTTC 3 cut(s) 68, 86, 934
EarI CTCTTC 3 cut(s) 68, 86, 934
Eco130I CCWWGG 5 cut(s) 668, 812, 1078, 1344, 1464
Eco147I AGGCCT 1 cut(s) 1463
Eco47I GGWCC 3 cut(s) 571, 1403, 1520
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 2 cut(s) 151, 181
EcoNI CCTNNNNNAGG 1 cut(s) 1485
EcoRII CCWGG 3 cut(s) 727, 745, 1585
EcoT14I CCWWGG 5 cut(s) 668, 812, 1078, 1344, 1464
ErhI CCWWGG 5 cut(s) 668, 812, 1078, 1344, 1464
Esp3I CGTCTC 1 cut(s) 488
FaeI CATG 7 cut(s) 571, 658, 976, 989, 1004, 1048, 1348
FaiI YATR 9 cut(s) 437, 569, 656, 779, 974, 987, 1002, 1046, 1346
FaqI GGGAC 1 cut(s) 163
FatI CATG 7 cut(s) 567, 654, 972, 985, 1000, 1044, 1344
FauI CCCGC 1 cut(s) 1110
FokI GGATG 5 cut(s) 464, 536, 808, 1097, 1143
FspBI CTAG 6 cut(s) 477, 756, 1079, 1218, 1445, 1542
GlaI GCGC 1 cut(s) 27
GsaI CCCAGC 2 cut(s) 124, 226
GsuI CTGGAG 3 cut(s) 404, 750, 1368
HaeIII GGCC 4 cut(s) 386, 1463, 1585, 1590
HapII CCGG 2 cut(s) 362, 1518
HgaI GACGC 2 cut(s) 705, 1061
HhaI GCGC 1 cut(s) 28
Hin1II CATG 7 cut(s) 571, 658, 976, 989, 1004, 1048, 1348
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HincII GTYRAC 1 cut(s) 761
HindII GTYRAC 1 cut(s) 761
HinfI GANTC 5 cut(s) 184, 358, 401, 412, 491
HpaII CCGG 2 cut(s) 362, 1518
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 3 cut(s) 345, 761, 1319
Hpy188I TCNGA 1 cut(s) 919
Hpy188III TCNNGA 5 cut(s) 421, 542, 655, 1103, 1224
Hpy8I GTNNAC 3 cut(s) 345, 761, 1319
Hpy99I CGWCG 2 cut(s) 1077, 1596
HpyAV CCTTC 3 cut(s) 148, 838, 1332
HpyCH4III ACNGT 4 cut(s) 243, 333, 610, 739
HpyCH4IV ACGT 2 cut(s) 664, 1594
HpyF3I CTNAG 7 cut(s) 171, 273, 1011, 1146, 1222, 1440, 1458
HpySE526I ACGT 2 cut(s) 664, 1594
Hsp92II CATG 7 cut(s) 571, 658, 976, 989, 1004, 1048, 1348
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 469, 941
LmnI GCTCC 9 cut(s) 423, 544, 595, 730, 731, 909, 1261, 1333, 1387
LweI GCATC 5 cut(s) 514, 648, 1165, 1247, 1256
MaeI CTAG 6 cut(s) 477, 756, 1079, 1218, 1445, 1542
MaeII ACGT 2 cut(s) 664, 1594
MaeIII GTNAC 4 cut(s) 368, 621, 717, 739
MalI GATC 2 cut(s) 471, 943
MboI GATC 2 cut(s) 469, 941
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 1 cut(s) 941
MluCI AATT 5 cut(s) 287, 555, 843, 913, 1179
MlyI GAGTC 2 cut(s) 193, 352
MmeI TCCRAC 1 cut(s) 1184
MseI TTAA 1 cut(s) 911
MspI CCGG 2 cut(s) 362, 1518
MspR9I CCNGG 3 cut(s) 729, 747, 1587
MunI CAATTG 1 cut(s) 843
Mva1269I GAATGC 1 cut(s) 1301
MvaI CCWGG 3 cut(s) 729, 747, 1587
NcoI CCATGG 1 cut(s) 1344
NdeII GATC 2 cut(s) 469, 941
NheI GCTAGC 1 cut(s) 1217
NlaIII CATG 7 cut(s) 571, 658, 976, 989, 1004, 1048, 1348
NlaIV GGNNCC 3 cut(s) 376, 726, 943
NmeAIII GCCGAG 1 cut(s) 1561
NmuCI GTSAC 1 cut(s) 717
PagI TCATGA 1 cut(s) 654
PceI AGGCCT 1 cut(s) 1463
PcsI WCGNNNNNNNCGW 1 cut(s) 1588
PctI GAATGC 1 cut(s) 1301
PfeI GAWTC 3 cut(s) 401, 412, 491
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 727
PleI GAGTC 2 cut(s) 192, 352
PpsI GAGTC 2 cut(s) 192, 352
Psp6I CCWGG 3 cut(s) 727, 745, 1585
PspFI CCCAGC 2 cut(s) 120, 222
PspGI CCWGG 3 cut(s) 727, 745, 1585
PspN4I GGNNCC 3 cut(s) 376, 726, 943
PspPI GGNCC 4 cut(s) 384, 571, 1403, 1520
PstI CTGCAG 2 cut(s) 594, 1273
PstNI CAGNNNCTG 1 cut(s) 598
PsuI RGATCY 1 cut(s) 941
RsaI GTAC 5 cut(s) 446, 562, 697, 1034, 1318
RsaNI GTAC 5 cut(s) 445, 561, 696, 1033, 1317
SaqAI TTAA 1 cut(s) 911
Sau3AI GATC 2 cut(s) 469, 941
Sau96I GGNCC 4 cut(s) 384, 571, 1403, 1520
SchI GAGTC 2 cut(s) 193, 352
ScrFI CCNGG 3 cut(s) 729, 747, 1587
SfaNI GCATC 5 cut(s) 514, 648, 1165, 1247, 1256
SfcI CTRYAG 3 cut(s) 590, 777, 1269
SinI GGWCC 3 cut(s) 571, 1403, 1520
SmlI CTYRAG 1 cut(s) 1103
SmoI CTYRAG 1 cut(s) 1103
SpeI ACTAGT 1 cut(s) 755
Sse9I AATT 5 cut(s) 287, 555, 843, 913, 1179
SseBI AGGCCT 1 cut(s) 1463
SspMI CTAG 6 cut(s) 477, 756, 1079, 1218, 1445, 1542
StuI AGGCCT 1 cut(s) 1463
StyD4I CCNGG 3 cut(s) 727, 745, 1585
StyI CCWWGG 5 cut(s) 668, 812, 1078, 1344, 1464
TaaI ACNGT 4 cut(s) 243, 333, 610, 739
TaiI ACGT 2 cut(s) 667, 1597
TaqI TCGA 1 cut(s) 516
TaqII GACCGA 1 cut(s) 588
TasI AATT 5 cut(s) 287, 555, 843, 913, 1179
TatI WGTACW 2 cut(s) 1032, 1316
TfiI GAWTC 3 cut(s) 401, 412, 491
Tru1I TTAA 1 cut(s) 911
Tru9I TTAA 1 cut(s) 911
TseFI GTSAC 1 cut(s) 717
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 7 cut(s) 643, 989, 1016, 1061, 1278, 1341, 1482
TspGWI ACGGA 1 cut(s) 640
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 3 cut(s) 571, 1403, 1520
XagI CCTNNNNNAGG 1 cut(s) 1485
XapI RAATTY 1 cut(s) 913
XmaJI CCTAGG 1 cut(s) 1078
XspI CTAG 6 cut(s) 477, 756, 1079, 1218, 1445, 1542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.