Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

14582631 .. 14584579

Gene Structure 1949 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1045500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTTCTTAAGTCTCTTCTCTAGATTTCCTAGTAACTATTCCTTGAGCAGTGTGGAGAGAGAGATGGAGCTTAGCGAACATGGTTTCTTAGAGGAACTGCTACTCGCTCCAAGAAGAGACGGTTGGAGCAGCCTCAACTCTGGATTGAATGAGTTATTTCCCATCAATGGATGGAGTTTAGATTCTTTTGAAGAGAACCCAGTTCTGGTTTCCTCACTTAATCCACAATTTGTTGGGTTCTCCACACAATCAAGCTTTGAAGAATGCCCTTTCACCACCACCACTACTGCCTCCTCCTCCTCCTACCCTTTTGTTGTTGATGGGCTCTGTGCAGTCCCAGAGATCAATGGCACTACTACCCCTCCTCCATTTCCACCACAAGATCATCAAGATTACCCTCCAATGGTGGAAGATGAAGAGTTTGGTAATTTTCTTGGGAGTGAAAACCACAGCAGCTGCTTGGAGTTGGAAGAAAGCAAGAACAAAGATAATCTCGGTACTTGCAAAGTTGAGATGGACCAGCAAGCAGCAGATCATCACATTATTCCTTCAGCTTTTTCCATGGGATTGTGTGGTGAAAAGAGAAGCAGTAAGTCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTTATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCCATGCTCAGATCAATTGTCCCAAAGATTAGCAAGATGGACAGAACATCCATACTTGGAGACACAATAGATTATATGAAAGAGCTTTTGGAAAGGATCAATAAGTTGCAAGAAGAAGGAACTGAAGAGGGTACCAATCAAATCAACTTAATGGGCACCTCCAAGGACCTAAGCTCAAGTGAGGTACTAGTCAGAAATTCCCCAAAGTTTGATGTGGAGAGGAGAGATGGAGATACCAGGATAGACATATGCTGTGCAGCCAAGCCAGGATTGCTGCTGTCAACAGTGAACACTATAGAAGCATTAGGGCTTGAGATTAAACAGTGTGTTATAAGTTGCTTCAATGATTTTTCAATGCAAGCTTCATGTTCTGAGGGAGCTGAGCAGAGAAATTTGTTAAGTCCTCAGGATATAAAGCAAGCATTGTTCAGAAATGCAGGATATGGAGGAAGATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

378

Amino Acids

42.03

Weight (kDa)

4.91

Isoelectric Point (pI)

63.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	211 - 253	7.9e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	296 - 368	5.2e-08	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1004
Acc65I	GGTACC	1 cut(s)	803
AccB1I	GGYRCC	2 cut(s)	803, 827
AciI	CCGC	1 cut(s)	667
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	868, 1063
AcuI	CTGAAG	2 cut(s)	534, 816
AfaI	GTAC	3 cut(s)	499, 805, 858
AfeI	AGCGCT	1 cut(s)	656
AfiI	CCNNNNNNNGG	3 cut(s)	167, 205, 403
AflII	CTTAAG	1 cut(s)	7
AgsI	TTSAA	7 cut(s)	148, 191, 260, 621, 661, 1015, 1026
AhlI	ACTAGT	1 cut(s)	859
AjnI	CCWGG	2 cut(s)	908, 937
AjuI	GAANNNNNNNTTGG	4 cut(s)	106, 138, 743, 775
AluBI	AGCT	8 cut(s)	70, 255, 456, 554, 757, 846, 1034, 1052
AluI	AGCT	8 cut(s)	70, 255, 456, 554, 757, 846, 1034, 1052
Alw26I	GTCTC	3 cut(s)	17, 111, 726
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	456
Aor51HI	AGCGCT	1 cut(s)	656
ApeKI	GCWGC	7 cut(s)	129, 453, 456, 527, 613, 929, 946
ApoI	RAATTY	2 cut(s)	868, 1063
Asp718I	GGTACC	1 cut(s)	803
AspLEI	GCGC	1 cut(s)	657
AspS9I	GGNCC	2 cut(s)	517, 838
AsuHPI	GGTGA	2 cut(s)	265, 587
AvaII	GGWCC	2 cut(s)	517, 838
AxyI	CCTNAGG	1 cut(s)	1077
BaeGI	GKGCMC	1 cut(s)	830
BanI	GGYRCC	2 cut(s)	803, 827
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	7 cut(s)	141, 443, 465, 539, 625, 933, 941
BccI	CCATC	7 cut(s)	58, 165, 170, 314, 508, 703, 893
BciT130I	CCWGG	2 cut(s)	910, 939
BcoDI	GTCTC	3 cut(s)	17, 111, 726
BcuI	ACTAGT	1 cut(s)	859
BfaI	CTAG	3 cut(s)	21, 30, 860
BfmI	CTRYAG	1 cut(s)	966
BfoI	RGCGCY	1 cut(s)	658
BfrI	CTTAAG	1 cut(s)	7
BisI	GCNGC	7 cut(s)	130, 454, 457, 528, 614, 930, 947
BlpI	GCTNAGC	2 cut(s)	71, 1053
BlsI	GCNGC	7 cut(s)	131, 455, 458, 529, 615, 931, 948
Bme1390I	CCNGG	2 cut(s)	910, 939
Bme18I	GGWCC	2 cut(s)	517, 838
BmgT120I	GGNCC	2 cut(s)	517, 838
BmiI	GGNNCC	2 cut(s)	805, 829
BmrFI	CCNGG	2 cut(s)	910, 939
BmrI	ACTGGG	1 cut(s)	194
BmuI	ACTGGG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	842
Bpu1102I	GCTNAGC	2 cut(s)	71, 1053
BpuEI	CTTGAG	3 cut(s)	64, 832, 1004
BsaJI	CCNNGG	2 cut(s)	561, 834
BsaXI	ACNNNNNCTCC	4 cut(s)	346, 349, 376, 379
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 205, 403
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	1077
BseBI	CCWGG	2 cut(s)	910, 939
BseDI	CCNNGG	2 cut(s)	561, 834
BseGI	GGATG	2 cut(s)	176, 719
BseLI	CCNNNNNNNGG	3 cut(s)	167, 205, 403
BseMII	CTCAG	4 cut(s)	694, 1035, 1044, 1091
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	5 cut(s)	283, 286, 289, 354, 907
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	7 cut(s)	141, 443, 465, 539, 625, 933, 941
BsgI	GTGCAG	2 cut(s)	351, 948
BshNI	GGYRCC	2 cut(s)	803, 827
BslFI	GGGAC	2 cut(s)	320, 677
BslI	CCNNNNNNNGG	3 cut(s)	167, 205, 403
BsmAI	GTCTC	3 cut(s)	17, 111, 726
BsmBI	CGTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	320, 677
BsmI	GAATGC	1 cut(s)	269
Bsp1286I	GDGCHC	2 cut(s)	327, 830
Bsp143I	GATC	5 cut(s)	342, 382, 532, 683, 768
Bsp1720I	GCTNAGC	2 cut(s)	71, 1053
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	1 cut(s)	667
BspCNI	CTCAG	4 cut(s)	693, 1036, 1045, 1090
BspLI	GGNNCC	2 cut(s)	805, 829
BspPI	GGATC	1 cut(s)	776
BspT107I	GGYRCC	2 cut(s)	803, 827
BspTI	CTTAAG	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	561, 834
BssMI	GATC	5 cut(s)	342, 382, 532, 683, 768
BssT1I	CCWWGG	2 cut(s)	561, 834
Bst2UI	CCWGG	2 cut(s)	910, 939
Bst4CI	ACNGT	3 cut(s)	122, 958, 996
Bst6I	CTCTTC	5 cut(s)	20, 109, 186, 411, 792
BstAFI	CTTAAG	1 cut(s)	7
BstC8I	GCNNGC	3 cut(s)	525, 1032, 1092
BstDEI	CTNAG	8 cut(s)	71, 88, 597, 680, 842, 1044, 1053, 1077
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	176, 719
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	1 cut(s)	657
BstKTI	GATC	5 cut(s)	345, 385, 535, 686, 771
BstMAI	GTCTC	3 cut(s)	17, 111, 726
BstMBI	GATC	5 cut(s)	342, 382, 532, 683, 768
BstMWI	GCNNNNNNNGC	1 cut(s)	943
BstNI	CCWGG	2 cut(s)	910, 939
BstSCI	CCNGG	2 cut(s)	908, 937
BstSFI	CTRYAG	1 cut(s)	966
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	7 cut(s)	141, 443, 465, 539, 625, 933, 941
Bsu36I	CCTNAGG	1 cut(s)	1077
BtgI	CCRYGG	1 cut(s)	561
BtsCI	GGATG	2 cut(s)	176, 719
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	3 cut(s)	55, 963, 1001
Cac8I	GCNNGC	3 cut(s)	525, 1032, 1092
CaiI	CAGNNNCTG	1 cut(s)	456
CfoI	GCGC	1 cut(s)	657
Cfr13I	GGNCC	2 cut(s)	517, 838
Csp6I	GTAC	3 cut(s)	498, 804, 857
CviAII	CATG	4 cut(s)	80, 562, 676, 1038
CviQI	GTAC	3 cut(s)	498, 804, 857
DdeI	CTNAG	8 cut(s)	71, 88, 597, 680, 842, 1044, 1053, 1077
DpnI	GATC	5 cut(s)	344, 384, 534, 685, 770
DpnII	GATC	5 cut(s)	342, 382, 532, 683, 768
Eam1104I	CTCTTC	5 cut(s)	20, 109, 186, 411, 792
EarI	CTCTTC	5 cut(s)	20, 109, 186, 411, 792
Eco130I	CCWWGG	2 cut(s)	561, 834
Eco24I	GRGCYC	1 cut(s)	327
Eco47I	GGWCC	2 cut(s)	517, 838
Eco47III	AGCGCT	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	534, 816
Eco81I	CCTNAGG	1 cut(s)	1077
EcoO109I	RGGNCCY	1 cut(s)	838
EcoRII	CCWGG	2 cut(s)	908, 937
EcoT14I	CCWWGG	2 cut(s)	561, 834
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	561, 834
Esp3I	CGTCTC	1 cut(s)	111
FaeI	CATG	4 cut(s)	83, 565, 679, 1041
FaqI	GGGAC	2 cut(s)	320, 677
FatI	CATG	4 cut(s)	79, 561, 675, 1037
FauNDI	CATATG	1 cut(s)	920
Fnu4HI	GCNGC	7 cut(s)	130, 454, 457, 528, 614, 930, 947
FokI	GGATG	2 cut(s)	183, 706
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	7 cut(s)	130, 454, 457, 528, 614, 930, 947
FspBI	CTAG	3 cut(s)	21, 30, 860
GlaI	GCGC	1 cut(s)	656
GluI	GCNGC	7 cut(s)	130, 454, 457, 528, 614, 930, 947
HaeII	RGCGCY	1 cut(s)	658
HhaI	GCGC	1 cut(s)	657
Hin1II	CATG	4 cut(s)	83, 565, 679, 1041
Hin6I	GCGC	1 cut(s)	655
HinP1I	GCGC	1 cut(s)	655
HincII	GTYRAC	1 cut(s)	954
HindII	GTYRAC	1 cut(s)	954
HindIII	AAGCTT	2 cut(s)	253, 1032
HinfI	GANTC	2 cut(s)	182, 625
HphI	GGTGA	2 cut(s)	265, 587
Hpy166II	GTNNAC	2 cut(s)	954, 961
Hpy188I	TCNGA	4 cut(s)	683, 866, 1045, 1103
Hpy188III	TCNNGA	4 cut(s)	21, 141, 389, 1079
Hpy8I	GTNNAC	2 cut(s)	954, 961
HpyAV	CCTTC	5 cut(s)	558, 602, 627, 642, 782
HpyCH4III	ACNGT	3 cut(s)	122, 958, 996
HpyCH4V	TGCA	6 cut(s)	332, 504, 781, 929, 1030, 1109
HpyF10VI	GCNNNNNNNGC	1 cut(s)	943
HpyF3I	CTNAG	8 cut(s)	71, 88, 597, 680, 842, 1044, 1053, 1077
Hsp92II	CATG	4 cut(s)	83, 565, 679, 1041
HspAI	GCGC	1 cut(s)	655
KpnI	GGTACC	1 cut(s)	807
Kzo9I	GATC	5 cut(s)	342, 382, 532, 683, 768
LmnI	GCTCC	4 cut(s)	67, 112, 126, 1049
Lsp1109I	GCAGC	7 cut(s)	141, 443, 465, 539, 625, 933, 941
MaeI	CTAG	3 cut(s)	21, 30, 860
MaeIII	GTNAC	1 cut(s)	32
MalI	GATC	5 cut(s)	344, 384, 534, 685, 770
MboI	GATC	5 cut(s)	342, 382, 532, 683, 768
MfeI	CAATTG	1 cut(s)	687
MhlI	GDGCHC	2 cut(s)	327, 830
MluCI	AATT	5 cut(s)	227, 427, 687, 868, 1063
MmeI	TCCRAC	2 cut(s)	104, 447
MseI	TTAA	5 cut(s)	8, 219, 821, 990, 1070
MspA1I	CMGCKG	1 cut(s)	456
MspCI	CTTAAG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	910, 939
MunI	CAATTG	1 cut(s)	687
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	2 cut(s)	910, 939
MwoI	GCNNNNNNNGC	1 cut(s)	943
NcoI	CCATGG	1 cut(s)	561
NdeI	CATATG	1 cut(s)	920
NdeII	GATC	5 cut(s)	342, 382, 532, 683, 768
NlaIII	CATG	4 cut(s)	83, 565, 679, 1041
NlaIV	GGNNCC	2 cut(s)	805, 829
PctI	GAATGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	182, 625
PkrI	GCNGC	7 cut(s)	131, 455, 458, 529, 615, 931, 948
PpuMI	RGGWCCY	1 cut(s)	838
PsiI	TTATAA	1 cut(s)	1004
Psp5II	RGGWCCY	1 cut(s)	838
Psp6I	CCWGG	2 cut(s)	908, 937
PspGI	CCWGG	2 cut(s)	908, 937
PspN4I	GGNNCC	2 cut(s)	805, 829
PspPI	GGNCC	2 cut(s)	517, 838
PspPPI	RGGWCCY	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	456
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	3 cut(s)	499, 805, 858
RsaNI	GTAC	3 cut(s)	498, 804, 857
SaqAI	TTAA	5 cut(s)	8, 219, 821, 990, 1070
SatI	GCNGC	7 cut(s)	130, 454, 457, 528, 614, 930, 947
Sau3AI	GATC	5 cut(s)	342, 382, 532, 683, 768
Sau96I	GGNCC	2 cut(s)	517, 838
ScrFI	CCNGG	2 cut(s)	910, 939
SduI	GDGCHC	2 cut(s)	327, 830
SfcI	CTRYAG	1 cut(s)	966
SinI	GGWCC	2 cut(s)	517, 838
SmlI	CTYRAG	4 cut(s)	7, 43, 847, 983
SmoI	CTYRAG	4 cut(s)	7, 43, 847, 983
SpeI	ACTAGT	1 cut(s)	859
Sse9I	AATT	5 cut(s)	227, 427, 687, 868, 1063
SsiI	CCGC	1 cut(s)	667
SspMI	CTAG	3 cut(s)	21, 30, 860
StyD4I	CCNGG	2 cut(s)	908, 937
StyI	CCWWGG	2 cut(s)	561, 834
TaaI	ACNGT	3 cut(s)	122, 958, 996
TasI	AATT	5 cut(s)	227, 427, 687, 868, 1063
TfiI	GAWTC	2 cut(s)	182, 625
Tru1I	TTAA	5 cut(s)	8, 219, 821, 990, 1070
Tru9I	TTAA	5 cut(s)	8, 219, 821, 990, 1070
TscAI	CASTG	3 cut(s)	55, 963, 1001
TseI	GCWGC	7 cut(s)	129, 453, 456, 527, 613, 929, 946
TspDTI	ATGAA	3 cut(s)	429, 764, 1026
TspRI	CASTG	3 cut(s)	55, 963, 1001
Vha464I	CTTAAG	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	517, 838
XapI	RAATTY	2 cut(s)	868, 1063
XbaI	TCTAGA	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 30, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.