Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

35210747 .. 35212658

Gene Structure 1912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTTAAGTTATTTCTACACACGCGTGGTTTGCAAATAAAGAAGAATTCTCCTCCATGTAATCAACATTCCCACAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGAGTTGAATGAACATGGTTTCTTAGAGGAGTTATTAGCACTAAGAAGAGACAGTAGTAGTAGCAGTACATGGGAAACCAATATTCCAACTGAAATGAATGAATTGTTGTCTAGTAGTGGTAGCTGGGGAAATTTTGATTACTTTGATCAACAAAACCCTTCATCTTCTTTCCTCCCAATTTCTTCCTGCACCCATGAATTCTCACCTTCATTTGAACCCAACTTTAACAGCAGCAACTTCAACAGTAACACCACCGTCAATCAAGAAGTCTACTATCCCTTAGGCTTTGGCATTACTGATGAAGCACTGCTCTCAGCTCACCAGCAGGTCACTGACTCATCCTATAACACCCTCGACACACCACCGTTTCCGGTCCCGGAAGACAATCCATGGTCCATGCTTGAAGAAGAAGAGTTGGGTTTCCCTGGTGATGAAATGCACAACTTGGAGACTCAAGCTGAAGCTGCTGGCTGCAAAGTGGAGCCAACTCAGTCCCCCGACCAAGTCCCAGCTTTCAACATAGGAATGTGTGTGGAGAGAAATACCAGAGCTAATAATAAGAAGTTGCAGGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGATTGAACGACCGGCTTTCGATGCTAAGATCAATTGTGCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATAGATTACATGAAGGAGCTCCTGGAGAGAATCAACAATTTGCAACAAGAAATTGAAGCAGATCCAGATCAGTTAAATGTGATGAGCCTTTTCAAGGATACAAAACCAAATGAAATGCTAGTCAGGAACTCACCTAAGTTTGATGTGCAAAGGAGGAATGTGGACACCAAGATTGACATATGCTGTACAGGAAAGCCAGGGCTGTTGTTATCTACAGTATCTACCTTGGAAGCCTTAGGCCTTCAGATTCAACAGTGTGTTATTAGCTGCTTCAATGAATTTGCAATGCAAGCTTCTTGTTCAGAGGATTTTGATCAGAGAACAATCGTAACTTCTGAAGACATAAAGCAAGCACTATATAGAAATGCAGGATATGGAGGAAGATGCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

403

Amino Acids

45.86

Weight (kDa)

5.09

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	237 - 279	8.6e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	328 - 393	4.1e-07	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	25
AclWI	GGATC	1 cut(s)	872
AcsI	RAATTY	4 cut(s)	46, 247, 314, 1094
AcuI	CTGAAG	3 cut(s)	597, 1043, 1173
AfaI	GTAC	2 cut(s)	184, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflII	CTTAAG	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	23
AjnI	CCWGG	3 cut(s)	541, 837, 1012
AleI	CACNNNNGTG	1 cut(s)	24
AluBI	AGCT	9 cut(s)	240, 434, 575, 581, 629, 668, 835, 1083, 1109
AluI	AGCT	9 cut(s)	240, 434, 575, 581, 629, 668, 835, 1083, 1109
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	3 cut(s)	159, 560, 804
AlwI	GGATC	1 cut(s)	872
AoxI	GGCC	1 cut(s)	1054
ApeKI	GCWGC	5 cut(s)	348, 581, 588, 691, 1083
ApoI	RAATTY	4 cut(s)	46, 247, 314, 1094
AspS9I	GGNCC	2 cut(s)	490, 510
AsuC2I	CCSGG	1 cut(s)	494
AsuHPI	GGTGA	4 cut(s)	312, 428, 557, 939
AvaII	GGWCC	2 cut(s)	490, 510
AxyI	CCTNAGG	2 cut(s)	397, 1051
BaeGI	GKGCMC	1 cut(s)	774
BanII	GRGCYC	1 cut(s)	837
BbsI	GAAGAC	2 cut(s)	504, 1161
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	5 cut(s)	360, 568, 575, 703, 1070
BccI	CCATC	3 cut(s)	109, 703, 781
BciT130I	CCWGG	3 cut(s)	543, 839, 1014
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	2 cut(s)	262, 1129
BcnI	CCSGG	1 cut(s)	494
BcoDI	GTCTC	3 cut(s)	159, 560, 804
BfaI	CTAG	2 cut(s)	228, 935
BfmI	CTRYAG	2 cut(s)	816, 1029
BfrI	CTTAAG	1 cut(s)	5
BfuAI	ACCTGC	1 cut(s)	433
BfuI	GTATCC	1 cut(s)	907
BisI	GCNGC	5 cut(s)	349, 582, 589, 692, 1084
BlsI	GCNGC	5 cut(s)	350, 583, 590, 693, 1085
Bme1390I	CCNGG	4 cut(s)	494, 543, 839, 1014
Bme18I	GGWCC	2 cut(s)	490, 510
BmgT120I	GGNCC	2 cut(s)	490, 510
BmiI	GGNNCC	2 cut(s)	492, 600
BmrFI	CCNGG	4 cut(s)	494, 543, 839, 1014
BmsI	GCATC	2 cut(s)	744, 1190
BpiI	GAAGAC	2 cut(s)	504, 1161
BpmI	CTGGAG	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	494
BsaBI	GATNNNNATC	2 cut(s)	882, 1128
BsaJI	CCNNGG	4 cut(s)	506, 541, 1013, 1041
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	1 cut(s)	744
Bse21I	CCTNAGG	2 cut(s)	397, 1051
Bse3DI	GCAATG	1 cut(s)	1107
Bse8I	GATNNNNATC	2 cut(s)	882, 1128
BseBI	CCWGG	3 cut(s)	543, 839, 1014
BseDI	CCNNGG	4 cut(s)	506, 541, 1013, 1041
BseGI	GGATG	1 cut(s)	455
BseJI	GATNNNNATC	2 cut(s)	882, 1128
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	1 cut(s)	1107
BseMII	CTCAG	3 cut(s)	444, 620, 705
BseRI	GAGGAG	2 cut(s)	42, 158
BseSI	GKGCMC	1 cut(s)	774
BseXI	GCAGC	5 cut(s)	360, 568, 575, 703, 1070
BseYI	CCCAGC	2 cut(s)	240, 625
BsgI	GTGCAG	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	25
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	1 cut(s)	1056
BsiEI	CGRYCG	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	837
BsiSI	CCGG	3 cut(s)	488, 494, 745
BslFI	GGGAC	3 cut(s)	476, 595, 608
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	3 cut(s)	159, 560, 804
BsmFI	GGGAC	3 cut(s)	476, 595, 608
BsnI	GGCC	1 cut(s)	1056
Bsp1286I	GDGCHC	2 cut(s)	774, 837
Bsp1407I	TGTACA	1 cut(s)	1001
Bsp143I	GATC	5 cut(s)	262, 761, 877, 883, 1129
Bsp19I	CCATGG	1 cut(s)	506
BspANI	GGCC	1 cut(s)	1056
BspCNI	CTCAG	3 cut(s)	443, 619, 706
BspFNI	CGCG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	492, 600
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	872
BspTI	CTTAAG	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	1107
BsrFI	RCCGGY	1 cut(s)	744
BsrGI	TGTACA	1 cut(s)	1001
BssAI	RCCGGY	1 cut(s)	744
BssECI	CCNNGG	4 cut(s)	506, 541, 1013, 1041
BssMI	GATC	5 cut(s)	262, 761, 877, 883, 1129
BssT1I	CCWWGG	2 cut(s)	506, 1041
Bst2UI	CCWGG	3 cut(s)	543, 839, 1014
Bst4CI	ACNGT	6 cut(s)	170, 362, 373, 483, 1033, 1071
Bst6I	CTCTTC	2 cut(s)	157, 522
BstAFI	CTTAAG	1 cut(s)	5
BstAUI	TGTACA	1 cut(s)	1001
BstC8I	GCNNGC	3 cut(s)	586, 1107, 1167
BstDEI	CTNAG	9 cut(s)	139, 158, 397, 430, 606, 714, 758, 951, 1051
BstDSI	CCRYGG	1 cut(s)	506
BstENI	CCTNNNNNAGG	1 cut(s)	908
BstF5I	GGATG	1 cut(s)	455
BstFNI	CGCG	1 cut(s)	25
BstKTI	GATC	5 cut(s)	265, 764, 880, 886, 1132
BstMAI	GTCTC	3 cut(s)	159, 560, 804
BstMBI	GATC	5 cut(s)	262, 761, 877, 883, 1129
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	5 cut(s)	31, 581, 691, 754, 1106
BstNI	CCWGG	3 cut(s)	543, 839, 1014
BstSCI	CCNGG	4 cut(s)	492, 541, 837, 1012
BstSFI	CTRYAG	2 cut(s)	816, 1029
BstSLI	GKGCMC	1 cut(s)	774
BstUI	CGCG	1 cut(s)	25
BstV1I	GCAGC	5 cut(s)	360, 568, 575, 703, 1070
BstV2I	GAAGAC	2 cut(s)	504, 1161
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
Bsu36I	CCTNAGG	2 cut(s)	397, 1051
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	1056
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	455
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	3 cut(s)	422, 447, 1076
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	586, 1107, 1167
Cfr10I	RCCGGY	1 cut(s)	744
Cfr13I	GGNCC	2 cut(s)	490, 510
Csp6I	GTAC	2 cut(s)	183, 1002
CviAII	CATG	7 cut(s)	57, 131, 186, 311, 507, 514, 826
CviQI	GTAC	2 cut(s)	183, 1002
DdeI	CTNAG	9 cut(s)	139, 158, 397, 430, 606, 714, 758, 951, 1051
DpnI	GATC	5 cut(s)	264, 763, 879, 885, 1131
DpnII	GATC	5 cut(s)	262, 761, 877, 883, 1129
Eam1104I	CTCTTC	2 cut(s)	157, 522
EarI	CTCTTC	2 cut(s)	157, 522
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	2 cut(s)	506, 1041
Eco147I	AGGCCT	1 cut(s)	1056
Eco24I	GRGCYC	1 cut(s)	837
Eco47I	GGWCC	2 cut(s)	490, 510
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	3 cut(s)	597, 1043, 1173
Eco81I	CCTNAGG	2 cut(s)	397, 1051
EcoICRI	GAGCTC	1 cut(s)	835
EcoNI	CCTNNNNNAGG	1 cut(s)	908
EcoRI	GAATTC	2 cut(s)	46, 314
EcoRII	CCWGG	3 cut(s)	541, 837, 1012
EcoT14I	CCWWGG	2 cut(s)	506, 1041
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	2 cut(s)	506, 1041
FaeI	CATG	7 cut(s)	60, 134, 189, 314, 510, 517, 829
FaqI	GGGAC	3 cut(s)	476, 595, 608
FatI	CATG	7 cut(s)	56, 130, 185, 310, 506, 513, 825
FauNDI	CATATG	1 cut(s)	995
FbaI	TGATCA	2 cut(s)	262, 1129
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	5 cut(s)	349, 582, 589, 692, 1084
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	5 cut(s)	349, 582, 589, 692, 1084
FspBI	CTAG	2 cut(s)	228, 935
GluI	GCNGC	5 cut(s)	349, 582, 589, 692, 1084
GsaI	CCCAGC	2 cut(s)	244, 629
GsuI	CTGGAG	1 cut(s)	860
HaeIII	GGCC	1 cut(s)	1056
HapII	CCGG	3 cut(s)	488, 494, 745
Hin1II	CATG	7 cut(s)	60, 134, 189, 314, 510, 517, 829
HindIII	AAGCTT	1 cut(s)	1107
HinfI	GANTC	5 cut(s)	452, 568, 703, 846, 1063
HpaII	CCGG	3 cut(s)	488, 494, 745
HphI	GGTGA	4 cut(s)	312, 428, 557, 939
Hpy166II	GTNNAC	2 cut(s)	388, 979
Hpy188I	TCNGA	4 cut(s)	1062, 1120, 1134, 1153
Hpy188III	TCNNGA	3 cut(s)	380, 881, 940
Hpy8I	GTNNAC	2 cut(s)	388, 979
HpyAV	CCTTC	4 cut(s)	285, 333, 823, 1067
HpyCH4III	ACNGT	6 cut(s)	170, 362, 373, 483, 1033, 1071
HpyF10VI	GCNNNNNNNGC	5 cut(s)	31, 581, 691, 754, 1106
HpyF3I	CTNAG	9 cut(s)	139, 158, 397, 430, 606, 714, 758, 951, 1051
Hsp92II	CATG	7 cut(s)	60, 134, 189, 314, 510, 517, 829
Ksp22I	TGATCA	2 cut(s)	262, 1129
Kzo9I	GATC	5 cut(s)	262, 761, 877, 883, 1129
LmnI	GCTCC	3 cut(s)	598, 832, 840
Lsp1109I	GCAGC	5 cut(s)	360, 568, 575, 703, 1070
LweI	GCATC	2 cut(s)	744, 1190
MaeI	CTAG	2 cut(s)	228, 935
MaeIII	GTNAC	3 cut(s)	362, 445, 1144
MalI	GATC	5 cut(s)	264, 763, 879, 885, 1131
MboI	GATC	5 cut(s)	262, 761, 877, 883, 1129
MfeI	CAATTG	1 cut(s)	765
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	2 cut(s)	774, 837
MluCI	AATT	9 cut(s)	46, 218, 247, 294, 314, 765, 853, 867, 1094
MluI	ACGCGT	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	446, 562
MmeI	TCCRAC	1 cut(s)	227
MnlI	CCTC	7 cut(s)	63, 136, 299, 479, 963, 1114, 1187
MseI	TTAA	3 cut(s)	6, 342, 890
MslI	CAYNNNNRTG	2 cut(s)	24, 641
MspCI	CTTAAG	1 cut(s)	5
MspI	CCGG	3 cut(s)	488, 494, 745
MspR9I	CCNGG	4 cut(s)	494, 543, 839, 1014
MunI	CAATTG	1 cut(s)	765
MvaI	CCWGG	3 cut(s)	543, 839, 1014
MvnI	CGCG	1 cut(s)	25
MwoI	GCNNNNNNNGC	5 cut(s)	31, 581, 691, 754, 1106
NciI	CCSGG	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	506
NdeI	CATATG	1 cut(s)	995
NdeII	GATC	5 cut(s)	262, 761, 877, 883, 1129
NlaIII	CATG	7 cut(s)	60, 134, 189, 314, 510, 517, 829
NlaIV	GGNNCC	2 cut(s)	492, 600
NmuCI	GTSAC	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	1056
PfeI	GAWTC	3 cut(s)	703, 846, 1063
PflFI	GACNNNGTC	1 cut(s)	620
PfoI	TCCNGGA	2 cut(s)	492, 837
PkrI	GCNGC	5 cut(s)	350, 583, 590, 693, 1085
PleI	GAGTC	2 cut(s)	446, 562
PpsI	GAGTC	2 cut(s)	446, 562
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	3 cut(s)	541, 837, 1012
PspFI	CCCAGC	2 cut(s)	240, 625
PspGI	CCWGG	3 cut(s)	541, 837, 1012
PspN4I	GGNNCC	2 cut(s)	492, 600
PspPI	GGNCC	2 cut(s)	490, 510
PsuI	RGATCY	1 cut(s)	877
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	2 cut(s)	184, 1003
RsaNI	GTAC	2 cut(s)	183, 1002
RseI	CAYNNNNRTG	2 cut(s)	24, 641
SacI	GAGCTC	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	6, 342, 890
SatI	GCNGC	5 cut(s)	349, 582, 589, 692, 1084
Sau3AI	GATC	5 cut(s)	262, 761, 877, 883, 1129
Sau96I	GGNCC	2 cut(s)	490, 510
SchI	GAGTC	2 cut(s)	446, 562
ScrFI	CCNGG	4 cut(s)	494, 543, 839, 1014
SduI	GDGCHC	2 cut(s)	774, 837
SfaNI	GCATC	2 cut(s)	744, 1190
SfcI	CTRYAG	2 cut(s)	816, 1029
SinI	GGWCC	2 cut(s)	490, 510
SmiMI	CAYNNNNRTG	2 cut(s)	24, 641
SmlI	CTYRAG	2 cut(s)	5, 570
SmoI	CTYRAG	2 cut(s)	5, 570
Sse9I	AATT	9 cut(s)	46, 218, 247, 294, 314, 765, 853, 867, 1094
SseBI	AGGCCT	1 cut(s)	1056
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	228, 935
SstI	GAGCTC	1 cut(s)	837
StuI	AGGCCT	1 cut(s)	1056
StyD4I	CCNGG	4 cut(s)	492, 541, 837, 1012
StyI	CCWWGG	2 cut(s)	506, 1041
TaaI	ACNGT	6 cut(s)	170, 362, 373, 483, 1033, 1071
TaqI	TCGA	2 cut(s)	471, 752
TasI	AATT	9 cut(s)	46, 218, 247, 294, 314, 765, 853, 867, 1094
TatI	WGTACW	2 cut(s)	182, 1001
TfiI	GAWTC	3 cut(s)	703, 846, 1063
Tru1I	TTAA	3 cut(s)	6, 342, 890
Tru9I	TTAA	3 cut(s)	6, 342, 890
TscAI	CASTG	3 cut(s)	429, 454, 1076
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	5 cut(s)	348, 581, 588, 691, 1083
Tsp45I	GTSAC	1 cut(s)	445
TspRI	CASTG	3 cut(s)	429, 454, 1076
Tth111I	GACNNNGTC	1 cut(s)	620
Vha464I	CTTAAG	1 cut(s)	5
VpaK11BI	GGWCC	2 cut(s)	490, 510
XagI	CCTNNNNNAGG	1 cut(s)	908
XapI	RAATTY	4 cut(s)	46, 247, 314, 1094
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	2 cut(s)	228, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.