Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

11222367 .. 11224651

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTGGAGCTTTGATTCCAATTTTGAAGAGAACCCAGCTCTGGTTTCCTCATCAAACCCTCAATTTGGTGGGTTCTCTACACAAGCTGAGTCAACCTTTGAATGCCCGTTACTCACTGAGCAACAAGGCTCATCCTTCCCTTTTGTTGATGGAGGTGGAGTGCTCACAGTCCCATCTGAGATTGATTCCTGTGGCTTTCAATATGGGATTGTGTGGTGGAAAGAGAAACTGCAGCAGCAAGTCTAAGAAGATAGAAGGGCAGCCTTCAAAGAATCTAATGGCAGAGAGGAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCTATGCTCAGATCAATTGTCCCCAAGATTAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGACTACATGAAAGAGCTTTTGGAAAGAATCAATAAGTTGCAAGAAGAGAAAATTGAGGAGAATACAAATCAGTTAAGCTTATTGGGCATCAACAAGGACCTAAACTCAAGTGAGGTCTTGGTGAGAAATTCTCCCAAGTTTGATGTGGAGAGGAGAGACATGGGCACCAGAATAGACATCTGCTGTGCAGCGAAGCCAGGATTGTTGCTTTCAACAGTGAGCACTATAGAAGCACTTGGCCTTGAGATTCAACAGTGTGTTATAAGCTGCTTCAATGATTTTTCATTGCAAGCTTCATGTTCAGAGGATGCAGAGCAGAGAACAATGATTAATTCTGAGGAAATAAAGCAAGCACTATTCAGAAATGCAGGGTATGGAGGGAGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

260

Amino Acids

29.15

Weight (kDa)

9.25

Isoelectric Point (pI)

63.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	94 - 136	4.5e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	179 - 251	9.9e-09	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	554
AciI	CCGC	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	517
AfeI	AGCGCT	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	42, 67
AgsI	TTSAA	8 cut(s)	28, 103, 202, 270, 310, 603, 641, 664
AjnI	CCWGG	1 cut(s)	586
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	7 cut(s)	11, 40, 88, 406, 468, 657, 683
AluI	AGCT	7 cut(s)	11, 40, 88, 406, 468, 657, 683
Alw21I	GWGCWC	2 cut(s)	167, 614
Alw26I	GTCTC	2 cut(s)	375, 540
Aor51HI	AGCGCT	1 cut(s)	305
AoxI	GGCC	1 cut(s)	628
ApeKI	GCWGC	5 cut(s)	234, 237, 262, 578, 657
ApoI	RAATTY	1 cut(s)	517
AseI	ATTAAT	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	523
AvaII	GGWCC	1 cut(s)	487
BaeGI	GKGCMC	1 cut(s)	557
BanI	GGYRCC	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	167, 614
BbvI	GCAGC	5 cut(s)	246, 249, 274, 590, 644
BccI	CCATC	3 cut(s)	145, 183, 352
BciT130I	CCWGG	1 cut(s)	588
BcoDI	GTCTC	2 cut(s)	375, 540
BfaI	CTAG	1 cut(s)	778
BfmI	CTRYAG	2 cut(s)	232, 615
BfoI	RGCGCY	1 cut(s)	307
BisI	GCNGC	5 cut(s)	235, 238, 263, 579, 658
BlsI	GCNGC	5 cut(s)	236, 239, 264, 580, 659
Bme1390I	CCNGG	1 cut(s)	588
Bme18I	GGWCC	1 cut(s)	487
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	3 cut(s)	486, 688, 764
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
BpuEI	CTTGAG	2 cut(s)	481, 653
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 67
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	588
BseGI	GGATG	2 cut(s)	133, 703
BseLI	CCNNNNNNNGG	2 cut(s)	42, 67
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	5 cut(s)	80, 110, 170, 343, 717
BseRI	GAGGAG	3 cut(s)	304, 461, 556
BseSI	GKGCMC	1 cut(s)	557
BseXI	GCAGC	5 cut(s)	246, 249, 274, 590, 644
BseYI	CCCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	630
BshNI	GGYRCC	1 cut(s)	554
BsiHKAI	GWGCWC	2 cut(s)	167, 614
BslFI	GGGAC	2 cut(s)	157, 326
BslI	CCNNNNNNNGG	2 cut(s)	42, 67
BsmAI	GTCTC	2 cut(s)	375, 540
BsmFI	GGGAC	2 cut(s)	157, 326
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	630
Bsp1286I	GDGCHC	3 cut(s)	167, 557, 614
Bsp143I	GATC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	5 cut(s)	81, 111, 171, 342, 718
BspLI	GGNNCC	1 cut(s)	556
BspMAI	CTGCAG	1 cut(s)	236
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	674
BssMI	GATC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	3 cut(s)	171, 607, 645
Bst6I	CTCTTC	2 cut(s)	23, 429
BstC8I	GCNNGC	2 cut(s)	681, 741
BstDEI	CTNAG	6 cut(s)	89, 119, 179, 246, 329, 726
BstF5I	GGATG	2 cut(s)	133, 703
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	1 cut(s)	306
BstKTI	GATC	1 cut(s)	335
BstMAI	GTCTC	2 cut(s)	375, 540
BstMBI	GATC	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	474
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	2 cut(s)	232, 615
BstSLI	GKGCMC	1 cut(s)	557
BstV1I	GCAGC	5 cut(s)	246, 249, 274, 590, 644
BsuRI	GGCC	1 cut(s)	630
BtsCI	GGATG	2 cut(s)	133, 703
BtsIMutI	CAGTG	3 cut(s)	116, 612, 650
Cac8I	GCNNGC	2 cut(s)	681, 741
CfoI	GCGC	1 cut(s)	306
Cfr13I	GGNCC	1 cut(s)	487
CviAII	CATG	3 cut(s)	397, 550, 687
DdeI	CTNAG	6 cut(s)	89, 119, 179, 246, 329, 726
DpnI	GATC	1 cut(s)	334
DpnII	GATC	1 cut(s)	332
Eam1104I	CTCTTC	2 cut(s)	23, 429
EarI	CTCTTC	2 cut(s)	23, 429
Eco47I	GGWCC	1 cut(s)	487
Eco47III	AGCGCT	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	586
FaeI	CATG	3 cut(s)	400, 553, 690
FaiI	YATR	9 cut(s)	206, 326, 374, 398, 551, 617, 653, 688, 765
FaqI	GGGAC	2 cut(s)	157, 326
FatI	CATG	3 cut(s)	396, 549, 686
Fnu4HI	GCNGC	5 cut(s)	235, 238, 263, 579, 658
FokI	GGATG	2 cut(s)	120, 710
Fsp4HI	GCNGC	5 cut(s)	235, 238, 263, 579, 658
FspBI	CTAG	1 cut(s)	778
GlaI	GCGC	1 cut(s)	305
GluI	GCNGC	5 cut(s)	235, 238, 263, 579, 658
GsaI	CCCAGC	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	307
HaeIII	GGCC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	306
Hin1II	CATG	3 cut(s)	400, 553, 690
Hin6I	GCGC	1 cut(s)	304
HinP1I	GCGC	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	95
HindII	GTYRAC	1 cut(s)	95
HindIII	AAGCTT	2 cut(s)	466, 681
HinfI	GANTC	6 cut(s)	16, 91, 187, 274, 417, 637
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	5 cut(s)	180, 332, 694, 727, 752
Hpy8I	GTNNAC	1 cut(s)	95
HpyAV	CCTTC	4 cut(s)	147, 251, 276, 291
HpyCH4III	ACNGT	3 cut(s)	171, 607, 645
HpyCH4V	TGCA	6 cut(s)	234, 430, 578, 679, 701, 758
HpyF10VI	GCNNNNNNNGC	1 cut(s)	474
HpyF3I	CTNAG	6 cut(s)	89, 119, 179, 246, 329, 726
Hsp92II	CATG	3 cut(s)	400, 553, 690
HspAI	GCGC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	332
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	7 cut(s)	28, 50, 204, 571, 573, 600, 744
Lsp1109I	GCAGC	5 cut(s)	246, 249, 274, 590, 644
LweI	GCATC	3 cut(s)	486, 688, 764
MaeI	CTAG	1 cut(s)	778
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	334
MboI	GATC	1 cut(s)	332
MboII	GAAGA	4 cut(s)	40, 262, 306, 446
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	3 cut(s)	167, 557, 614
MluCI	AATT	6 cut(s)	21, 64, 336, 441, 517, 721
MlyI	GAGTC	1 cut(s)	100
MseI	TTAA	2 cut(s)	464, 720
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	474
NdeII	GATC	1 cut(s)	332
NlaIII	CATG	3 cut(s)	400, 553, 690
NlaIV	GGNNCC	1 cut(s)	556
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	5 cut(s)	16, 187, 274, 417, 637
PkrI	GCNGC	5 cut(s)	236, 239, 264, 580, 659
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	487
PshBI	ATTAAT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	653
Psp5II	RGGWCCY	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	586
PspFI	CCCAGC	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	1 cut(s)	487
PspPPI	RGGWCCY	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	464, 720
SatI	GCNGC	5 cut(s)	235, 238, 263, 579, 658
Sau3AI	GATC	1 cut(s)	332
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	3 cut(s)	167, 557, 614
SfaNI	GCATC	3 cut(s)	486, 688, 764
SfcI	CTRYAG	2 cut(s)	232, 615
SinI	GGWCC	1 cut(s)	487
SmlI	CTYRAG	2 cut(s)	496, 632
SmoI	CTYRAG	2 cut(s)	496, 632
Sse9I	AATT	6 cut(s)	21, 64, 336, 441, 517, 721
SsiI	CCGC	1 cut(s)	316
SspMI	CTAG	1 cut(s)	778
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	3 cut(s)	171, 607, 645
TasI	AATT	6 cut(s)	21, 64, 336, 441, 517, 721
TfiI	GAWTC	5 cut(s)	16, 187, 274, 417, 637
Tru1I	TTAA	2 cut(s)	464, 720
Tru9I	TTAA	2 cut(s)	464, 720
TscAI	CASTG	3 cut(s)	123, 612, 650
TseI	GCWGC	5 cut(s)	234, 237, 262, 578, 657
TspDTI	ATGAA	3 cut(s)	413, 663, 675
TspRI	CASTG	3 cut(s)	123, 612, 650
VpaK11BI	GGWCC	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XspI	CTAG	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.