Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

21860707 .. 21862829

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGCTTACCCAACATGGTTTCTTAGAGGAGCTACTACTGGCACCAAGAAGAGACAGTTGGAGCACCTACTCCTCCAACTCCTCTGGATTGAATGAGTTATTTCCCATTAATGGATGGAGCTTTGATTCTTTTGAAGAGAACCCAGTTTTGGTTTCTTCAGTTAATAATCCTCCATTTTCTGGGTTCTCCACACAAACCGATCAACCACCAAGCTTTGAAGAATGCCCATTTTCTACTGACCATCATCAATCCTCCTCCTCTTACCCTTTTGTTGATGGACTCTGTACGGTGCCAGAGATTGATTCATCATACACCAAGGACAATGACACTATTGCCCCCCCATTTCCATCACAAGATCAAGATTACCCTTCAATGGTGGAAGATGAGGAGTTTGGGGGGTTTCTTGGAAGTGAGAATCAGAGAAGCTGTTTGGAGGAAAGCAAGAACATTGCTACTTGCAAAGTTGAGATGGAACAACAAGCCACAGATCATATTCCTTCAGCTTTTAATATGGGGTTGTGTGGTGAGAAACGAAGCAAGGCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAATCTTATGGCAGAGAGGAGAAGGAGGAAGCGCTTAAATGATCGCCTTTCCATGCTCAGATCAATAGTCCCCAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACAATAGATTATATGAAAGAGCTTTTGGAAAGGATCAATAAGTTGCAAGAAGAAGGAATTGAAGATGGTACTAATCAGATCAACTTAATGGACATCTCCAAGGAGCTAAAGCCAAGTGAGGTATTAGTCAGAAATTCCCCCAAGTTTGATGTGGAGAGGAGAGACATGGATACCCGGATAGACATCTGCTGTGCAGCCAAGCCAGGATTGCTGCTGTCAACAGTGAATACTATAGAAGCACTGGGCCTTGAGATTCAACAGTGTGTTATAAGCTGCTTCAATGATTTTTCAATGCAAGCTTCATGTTCAGAGGGAGCTGAGCAGAGAACTTTGTTAAGTCCTGAGGACATAAAGCAAGCATTGTTCAGAAATGCAGGGTATGGAGGAAGATGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

361

Amino Acids

40.43

Weight (kDa)

4.74

Isoelectric Point (pI)

70.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
AccB1I	GGYRCC	2 cut(s)	43, 292
AccB7I	CCANNNNNTGG	1 cut(s)	182
AclWI	GGATC	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	817
AcuI	CTGAAG	2 cut(s)	144, 486
AfaI	GTAC	2 cut(s)	289, 754
AfeI	AGCGCT	1 cut(s)	605
AfiI	CCNNNNNNNGG	4 cut(s)	113, 151, 182, 376
AgsI	TTSAA	9 cut(s)	94, 137, 221, 375, 570, 746, 941, 964, 975
AjnI	CCWGG	1 cut(s)	886
AjuI	GAANNNNNNNTTGG	6 cut(s)	43, 75, 134, 166, 692, 724
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	3 cut(s)	48, 675, 840
AlwI	GGATC	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	605
AoxI	GGCC	1 cut(s)	928
ApeKI	GCWGC	4 cut(s)	562, 878, 895, 957
ApoI	RAATTY	1 cut(s)	817
AseI	ATTAAT	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	928
AsuC2I	CCSGG	1 cut(s)	859
AsuHPI	GGTGA	1 cut(s)	539
AxyI	CCTNAGG	1 cut(s)	1026
BanI	GGYRCC	2 cut(s)	43, 292
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	4 cut(s)	574, 882, 890, 944
BccI	CCATC	7 cut(s)	111, 252, 272, 358, 466, 652, 743
BciT130I	CCWGG	1 cut(s)	888
BciVI	GTATCC	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	859
BcoDI	GTCTC	3 cut(s)	48, 675, 840
BfmI	CTRYAG	1 cut(s)	915
BfoI	RGCGCY	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	847
BisI	GCNGC	4 cut(s)	563, 879, 896, 958
BlpI	GCTNAGC	1 cut(s)	1002
BlsI	GCNGC	4 cut(s)	564, 880, 897, 959
Bme1390I	CCNGG	2 cut(s)	859, 888
BmgT120I	GGNCC	1 cut(s)	928
BmiI	GGNNCC	2 cut(s)	45, 294
BmrFI	CCNGG	2 cut(s)	859, 888
BmrI	ACTGGG	2 cut(s)	140, 935
BmuI	ACTGGG	2 cut(s)	140, 935
Bpu1102I	GCTNAGC	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	866
BsaJI	CCNNGG	2 cut(s)	318, 783
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 151, 182, 376
Bse1I	ACTGG	3 cut(s)	45, 146, 930
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	888
BseDI	CCNNGG	2 cut(s)	318, 783
BseGI	GGATG	1 cut(s)	122
BseJI	GATNNNNATC	1 cut(s)	866
BseLI	CCNNNNNNNGG	4 cut(s)	113, 151, 182, 376
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	3 cut(s)	643, 993, 1017
BseNI	ACTGG	3 cut(s)	45, 146, 930
BseRI	GAGGAG	8 cut(s)	44, 64, 73, 247, 250, 404, 604, 856
BseXI	GCAGC	4 cut(s)	574, 882, 890, 944
BsgI	GTGCAG	1 cut(s)	897
BshFI	GGCC	1 cut(s)	930
BshNI	GGYRCC	2 cut(s)	43, 292
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	859
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	4 cut(s)	113, 151, 182, 376
BsmAI	GTCTC	3 cut(s)	48, 675, 840
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
Bsp1720I	GCTNAGC	1 cut(s)	1002
BspANI	GGCC	1 cut(s)	930
BspCNI	CTCAG	3 cut(s)	642, 994, 1018
BspLI	GGNNCC	2 cut(s)	45, 294
BspPI	GGATC	1 cut(s)	725
BspT107I	GGYRCC	2 cut(s)	43, 292
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	3 cut(s)	45, 146, 930
BssECI	CCNNGG	2 cut(s)	318, 783
BssMI	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
BssT1I	CCWWGG	2 cut(s)	318, 783
Bst2UI	CCWGG	1 cut(s)	888
Bst4CI	ACNGT	4 cut(s)	59, 292, 907, 945
Bst6I	CTCTTC	2 cut(s)	46, 132
BstC8I	GCNNGC	2 cut(s)	981, 1041
BstDEI	CTNAG	5 cut(s)	25, 546, 629, 1002, 1026
BstF5I	GGATG	1 cut(s)	122
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	7 cut(s)	205, 361, 493, 616, 635, 720, 765
BstMAI	GTCTC	3 cut(s)	48, 675, 840
BstMBI	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	892
BstNI	CCWGG	1 cut(s)	888
BstSCI	CCNGG	2 cut(s)	857, 886
BstSFI	CTRYAG	1 cut(s)	915
BstV1I	GCAGC	4 cut(s)	574, 882, 890, 944
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuI	GTATCC	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	930
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	3 cut(s)	912, 923, 950
Cac8I	GCNNGC	2 cut(s)	981, 1041
CfoI	GCGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	928
Csp6I	GTAC	2 cut(s)	288, 753
CviAII	CATG	4 cut(s)	17, 625, 850, 987
CviQI	GTAC	2 cut(s)	288, 753
DdeI	CTNAG	5 cut(s)	25, 546, 629, 1002, 1026
DpnI	GATC	7 cut(s)	204, 360, 492, 615, 634, 719, 764
DpnII	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
Eam1104I	CTCTTC	2 cut(s)	46, 132
EarI	CTCTTC	2 cut(s)	46, 132
Eco130I	CCWWGG	2 cut(s)	318, 783
Eco47III	AGCGCT	1 cut(s)	605
Eco57I	CTGAAG	2 cut(s)	144, 486
Eco81I	CCTNAGG	1 cut(s)	1026
EcoRII	CCWGG	1 cut(s)	886
EcoT14I	CCWWGG	2 cut(s)	318, 783
ErhI	CCWWGG	2 cut(s)	318, 783
FaeI	CATG	4 cut(s)	20, 628, 853, 990
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	4 cut(s)	16, 624, 849, 986
Fnu4HI	GCNGC	4 cut(s)	563, 879, 896, 958
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	4 cut(s)	563, 879, 896, 958
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	4 cut(s)	563, 879, 896, 958
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	930
HapII	CCGG	1 cut(s)	859
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	4 cut(s)	20, 628, 853, 990
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	903
HindII	GTYRAC	1 cut(s)	903
HindIII	AAGCTT	2 cut(s)	214, 981
HinfI	GANTC	6 cut(s)	128, 282, 305, 418, 574, 937
HpaII	CCGG	1 cut(s)	859
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	1 cut(s)	903
Hpy188I	TCNGA	6 cut(s)	423, 632, 762, 815, 994, 1052
Hpy188III	TCNNGA	3 cut(s)	87, 362, 1025
Hpy8I	GTNNAC	1 cut(s)	903
HpyAV	CCTTC	6 cut(s)	381, 510, 551, 576, 588, 731
HpyCH4III	ACNGT	4 cut(s)	59, 292, 907, 945
HpyCH4V	TGCA	5 cut(s)	462, 730, 878, 979, 1058
HpyF10VI	GCNNNNNNNGC	1 cut(s)	892
HpyF3I	CTNAG	5 cut(s)	25, 546, 629, 1002, 1026
Hsp92II	CATG	4 cut(s)	20, 628, 853, 990
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
LmnI	GCTCC	6 cut(s)	4, 31, 63, 120, 787, 998
Lsp1109I	GCAGC	4 cut(s)	574, 882, 890, 944
MalI	GATC	7 cut(s)	204, 360, 492, 615, 634, 719, 764
MboI	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
MboII	GAAGA	8 cut(s)	63, 149, 150, 233, 395, 746, 758, 1083
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	2 cut(s)	741, 817
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	41, 102
MseI	TTAA	6 cut(s)	111, 165, 510, 608, 770, 1019
MspI	CCGG	1 cut(s)	859
MspR9I	CCNGG	2 cut(s)	859, 888
Mva1269I	GAATGC	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	888
MwoI	GCNNNNNNNGC	1 cut(s)	892
NciI	CCSGG	1 cut(s)	859
NdeII	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
NlaIII	CATG	4 cut(s)	20, 628, 853, 990
NlaIV	GGNNCC	2 cut(s)	45, 294
PctI	GAATGC	1 cut(s)	230
PfeI	GAWTC	5 cut(s)	128, 305, 418, 574, 937
PflMI	CCANNNNNTGG	1 cut(s)	182
PkrI	GCNGC	4 cut(s)	564, 880, 897, 959
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	111
PsiI	TTATAA	1 cut(s)	953
Psp6I	CCWGG	1 cut(s)	886
PspGI	CCWGG	1 cut(s)	886
PspN4I	GGNNCC	2 cut(s)	45, 294
PspPI	GGNCC	1 cut(s)	928
RsaI	GTAC	2 cut(s)	289, 754
RsaNI	GTAC	2 cut(s)	288, 753
SaqAI	TTAA	6 cut(s)	111, 165, 510, 608, 770, 1019
SatI	GCNGC	4 cut(s)	563, 879, 896, 958
Sau3AI	GATC	7 cut(s)	202, 358, 490, 613, 632, 717, 762
Sau96I	GGNCC	1 cut(s)	928
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	2 cut(s)	859, 888
SduI	GDGCHC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	915
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
Sse9I	AATT	2 cut(s)	741, 817
StyD4I	CCNGG	2 cut(s)	857, 886
StyI	CCWWGG	2 cut(s)	318, 783
TaaI	ACNGT	4 cut(s)	59, 292, 907, 945
TasI	AATT	2 cut(s)	741, 817
TfiI	GAWTC	5 cut(s)	128, 305, 418, 574, 937
Tru1I	TTAA	6 cut(s)	111, 165, 510, 608, 770, 1019
Tru9I	TTAA	6 cut(s)	111, 165, 510, 608, 770, 1019
TscAI	CASTG	3 cut(s)	912, 930, 950
TseI	GCWGC	4 cut(s)	562, 878, 895, 957
TspDTI	ATGAA	3 cut(s)	297, 713, 975
TspRI	CASTG	3 cut(s)	912, 930, 950
Van91I	CCANNNNNTGG	1 cut(s)	182
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	817
XcmI	CCANNNNNNNNNTGG	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.