Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

14612578 .. 14614501

Gene Structure 1924 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCAGCATCCAACACACAGAAGCACTTTGTTCTAGTCCATGGTGCAGGCCATGGAGCTTGGTGTTGGTACAAAATCAAGCCAAGGCTGGAGTCTGCCGGTCACAAGGTCACGGCCCTCAATAATGCCGCTTCAGGCATCGACACCAAGTCCCTAGAAGATGTTCATTCACTGGGAGAGTACTCTGAGCCTTTGCTTCAGTTTATCGGATCACTTGGTCCACAAGAAAAGGTTATCCTTGTAGGTCACAGCCTTGGGGGCATGAACTTGTCTGTTGCCATGGAGAAGTTCCCTGAGAAAATTTCAGCTGCTGTTTTCCTGGCTGCTTTTTTGCCAGATACCACACACCACCCAGGGTATGTTGTGGATCAGTTCATGCAAAAATTACCATTAGACAGATGGTTGGACACCCAGTTTGGACAGTTTGGAGAAGAACCCTTTGCTTCATTTCATTTTGGTCCCAAGTTCTTGGCAACAAGTCTCTATCAACTCAGCCCCATTGAGGATATCGAACTCGCCAAGAGTCTAGTAAGGAAGAGTTCCTTCTTTCGTGAACAAGTGTGTAAGATGAAGAACTTCTCAAATGAGGGTTATGGATCGGTTACAAGAGTTTATGCAATTTGTGAGAAGGACATGGTAATAACCAAGGAATTTCAGCATTGGATGATTCAAAATAGTGGGGTTAAAGATGTGGTGGAGATCAAAGGAGCTGATCATATGCCAATGTTTTCAAAGCCACAAGAACTCTCCAATTCTCTTCTAGAGATAGCACAGAAGTACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

261

Amino Acids

29.2

Weight (kDa)

6.41

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	6 - 116	8.7e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	9 - 246	1.6e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	10 - 249	9.9e-22	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	3 cut(s)	217, 375, 604
AcsI	RAATTY	2 cut(s)	300, 650
AcuI	CTGAAG	2 cut(s)	117, 182
AfaI	GTAC	3 cut(s)	71, 182, 779
AfiI	CCNNNNNNNGG	1 cut(s)	502
AgsI	TTSAA	2 cut(s)	671, 732
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	2 cut(s)	318, 352
AluBI	AGCT	3 cut(s)	59, 308, 710
AluI	AGCT	3 cut(s)	59, 308, 710
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	3 cut(s)	217, 375, 604
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	2 cut(s)	49, 114
ApeKI	GCWGC	2 cut(s)	308, 323
ApoI	RAATTY	2 cut(s)	300, 650
ArsI	GACNNNNNNTTYG	2 cut(s)	398, 430
Asp700I	GAANNNNTTC	2 cut(s)	162, 575
AspS9I	GGNCC	3 cut(s)	115, 218, 458
AvaII	GGWCC	2 cut(s)	218, 458
BbvI	GCAGC	2 cut(s)	295, 310
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	2 cut(s)	320, 354
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	4 cut(s)	35, 155, 527, 761
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	3 cut(s)	129, 309, 324
BlsI	GCNGC	3 cut(s)	130, 310, 325
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	320, 354
Bme18I	GGWCC	2 cut(s)	218, 458
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	115, 218, 458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	2 cut(s)	320, 354
BmrI	ACTGGG	2 cut(s)	182, 406
BmsI	GCATC	2 cut(s)	17, 147
BmuI	ACTGGG	2 cut(s)	182, 406
BpmI	CTGGAG	1 cut(s)	110
BsaJI	CCNNGG	8 cut(s)	40, 52, 83, 253, 279, 352, 353, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	502
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	177, 412
BseBI	CCWGG	2 cut(s)	320, 354
BseDI	CCNNGG	8 cut(s)	40, 52, 83, 253, 279, 352, 353, 645
BseGI	GGATG	2 cut(s)	8, 669
BseLI	CCNNNNNNNGG	1 cut(s)	502
BseMII	CTCAG	3 cut(s)	177, 285, 505
BseNI	ACTGG	2 cut(s)	177, 412
BseXI	GCAGC	2 cut(s)	295, 310
BsgI	GTGCAG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	51, 116
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	2 cut(s)	136, 444
BslI	CCNNNNNNNGG	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	136, 444
BsnI	GGCC	2 cut(s)	51, 116
Bsp143I	GATC	5 cut(s)	209, 367, 596, 699, 712
Bsp19I	CCATGG	3 cut(s)	40, 52, 279
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	51, 116
BspCNI	CTCAG	3 cut(s)	178, 286, 504
BspLI	GGNNCC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	217, 375, 604
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	2 cut(s)	177, 412
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	8 cut(s)	40, 52, 83, 253, 279, 352, 353, 645
BssMI	GATC	5 cut(s)	209, 367, 596, 699, 712
BssT1I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 645
Bst2UI	CCWGG	2 cut(s)	320, 354
Bst4CI	ACNGT	1 cut(s)	423
Bst6I	CTCTTC	2 cut(s)	530, 762
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	3 cut(s)	186, 294, 491
BstDSI	CCRYGG	3 cut(s)	40, 52, 279
BstF5I	GGATG	2 cut(s)	8, 669
BstKTI	GATC	5 cut(s)	212, 370, 599, 702, 715
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	5 cut(s)	209, 367, 596, 699, 712
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstNI	CCWGG	2 cut(s)	320, 354
BstSCI	CCNGG	2 cut(s)	318, 352
BstV1I	GCAGC	2 cut(s)	295, 310
BstXI	CCANNNNNNTGG	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	51, 116
BtgI	CCRYGG	3 cut(s)	40, 52, 279
BtsCI	GGATG	2 cut(s)	8, 669
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	49
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	3 cut(s)	115, 218, 458
Csp6I	GTAC	3 cut(s)	70, 181, 778
CviAII	CATG	6 cut(s)	41, 53, 262, 280, 376, 634
CviQI	GTAC	3 cut(s)	70, 181, 778
DdeI	CTNAG	3 cut(s)	186, 294, 491
DpnI	GATC	5 cut(s)	211, 369, 598, 701, 714
DpnII	GATC	5 cut(s)	209, 367, 596, 699, 712
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	530, 762
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	2 cut(s)	530, 762
Eco130I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 645
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	218, 458
Eco57I	CTGAAG	2 cut(s)	117, 182
EcoRII	CCWGG	2 cut(s)	318, 352
EcoRV	GATATC	1 cut(s)	508
EcoT14I	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 645
ErhI	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 645
FaeI	CATG	6 cut(s)	44, 56, 265, 283, 379, 637
FalI	AAGNNNNNCTT	2 cut(s)	527, 559
FaqI	GGGAC	2 cut(s)	136, 444
FatI	CATG	6 cut(s)	40, 52, 261, 279, 375, 633
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	3 cut(s)	129, 309, 324
FokI	GGATG	1 cut(s)	676
Fsp4HI	GCNGC	3 cut(s)	129, 309, 324
FspBI	CTAG	4 cut(s)	35, 155, 527, 761
GluI	GCNGC	3 cut(s)	129, 309, 324
GsuI	CTGGAG	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	51, 116
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	6 cut(s)	44, 56, 265, 283, 379, 637
HinfI	GANTC	3 cut(s)	92, 523, 667
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	3 cut(s)	221, 554, 780
Hpy188I	TCNGA	2 cut(s)	187, 209
Hpy188III	TCNNGA	2 cut(s)	551, 761
Hpy8I	GTNNAC	3 cut(s)	221, 554, 780
HpyAV	CCTTC	2 cut(s)	553, 622
HpyCH4III	ACNGT	1 cut(s)	423
HpyCH4V	TGCA	3 cut(s)	47, 379, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	3 cut(s)	186, 294, 491
Hsp92II	CATG	6 cut(s)	44, 56, 265, 283, 379, 637
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	5 cut(s)	209, 367, 596, 699, 712
LmnI	GCTCC	2 cut(s)	56, 707
Lsp1109I	GCAGC	2 cut(s)	295, 310
LweI	GCATC	2 cut(s)	17, 147
MaeI	CTAG	4 cut(s)	35, 155, 527, 761
MaeIII	GTNAC	4 cut(s)	101, 109, 245, 601
MalI	GATC	5 cut(s)	211, 369, 598, 701, 714
MboI	GATC	5 cut(s)	209, 367, 596, 699, 712
MboII	GAAGA	5 cut(s)	170, 443, 547, 583, 749
MluCI	AATT	5 cut(s)	300, 383, 618, 650, 751
MlyI	GAGTC	2 cut(s)	101, 532
MmeI	TCCRAC	2 cut(s)	36, 384
MnlI	CCTC	3 cut(s)	128, 496, 580
MroXI	GAANNNNTTC	2 cut(s)	162, 575
MseI	TTAA	2 cut(s)	684, 784
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	320, 354
MvaI	CCWGG	2 cut(s)	320, 354
MwoI	GCNNNNNNNGC	1 cut(s)	258
NcoI	CCATGG	3 cut(s)	40, 52, 279
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	5 cut(s)	209, 367, 596, 699, 712
NlaIII	CATG	6 cut(s)	44, 56, 265, 283, 379, 637
NlaIV	GGNNCC	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	101, 109, 245
PasI	CCCWGGG	1 cut(s)	353
PdmI	GAANNNNTTC	2 cut(s)	162, 575
PfeI	GAWTC	1 cut(s)	667
PkrI	GCNGC	3 cut(s)	130, 310, 325
PleI	GAGTC	2 cut(s)	100, 531
PpsI	GAGTC	2 cut(s)	100, 531
Psp6I	CCWGG	2 cut(s)	318, 352
PspGI	CCWGG	2 cut(s)	318, 352
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	3 cut(s)	115, 218, 458
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	308
RsaI	GTAC	3 cut(s)	71, 182, 779
RsaNI	GTAC	3 cut(s)	70, 181, 778
SaqAI	TTAA	2 cut(s)	684, 784
SatI	GCNGC	3 cut(s)	129, 309, 324
Sau3AI	GATC	5 cut(s)	209, 367, 596, 699, 712
Sau96I	GGNCC	3 cut(s)	115, 218, 458
ScaI	AGTACT	1 cut(s)	182
SchI	GAGTC	2 cut(s)	101, 532
ScrFI	CCNGG	2 cut(s)	320, 354
SetI	ASST	6 cut(s)	61, 111, 234, 247, 310, 712
SfaNI	GCATC	2 cut(s)	17, 147
SinI	GGWCC	2 cut(s)	218, 458
Sse9I	AATT	5 cut(s)	300, 383, 618, 650, 751
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	4 cut(s)	35, 155, 527, 761
StyD4I	CCNGG	2 cut(s)	318, 352
StyI	CCWWGG	6 cut(s)	40, 52, 83, 253, 279, 645
TaaI	ACNGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	141, 510
TasI	AATT	5 cut(s)	300, 383, 618, 650, 751
TatI	WGTACW	2 cut(s)	180, 777
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	667
Tru1I	TTAA	2 cut(s)	684, 784
Tru9I	TTAA	2 cut(s)	684, 784
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	3 cut(s)	101, 109, 245
TseI	GCWGC	2 cut(s)	308, 323
Tsp45I	GTSAC	3 cut(s)	101, 109, 245
TspDTI	ATGAA	6 cut(s)	155, 278, 364, 435, 440, 584
TspRI	CASTG	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	218, 458
XapI	RAATTY	2 cut(s)	300, 650
XbaI	TCTAGA	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	2 cut(s)	162, 575
XspI	CTAG	4 cut(s)	35, 155, 527, 761
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.