Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Forward (+)

71350348 .. 71352276

Gene Structure 1929 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00133860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGCTTACTCAACATGGGTTCTTGGAGGAGCTACTAGCTCCAATTAGAAGAGAGAGTTGGAACACATACTCTTCTGGGTTTAATGAGTTCTTTCCTATGAATAATGGGTGGAGCTTTGATTCCAATTTTGGAGAGAACCCAGTTCTAGTTTCCTCATCAAACCCTGAATTTGGTGTGTTCTCCACCCATACTGAGCCAACCTTTGAATGTCCATTACTCACTGAGCAGCAAGCCTCATCCTTCCCTTTTGTTGATGGAGGTGGGGTGCTCACAGTCCCAGCTGAGATTGAATCCTCATACACCAACAACAATGACAGCAATACCCCTCCATTCCCACCCCAAGATCAAGACTACCCTTCAATGGTGGAGGATGAGGAGTATGGAAATTTCCTTGGGAGTGAAAACCAGAGCAGCTGTTTGGAGTTGGAAGAGAGCAAGAACAGTACTTGCAAAGTTGAGACAGAGCAACAAGGCACTACTATCACTACAGATCATGGTGACATGCCTGTGGCTTTCAATATGGGATTGTGGGGTGGAAAGAGAAGCTGCAGCAGCAAGCCTAAGAAGTTAGAAGGGCAGCCTTCAAAGAACCTAATGGCAGAGAGAAGAAGAAGGAAGCGCTTGAATGACCGCCTTTCTATGCTCAGATCAATAGTCCCCAAGATTAGCAAGCAGATGGACAGAACATCTATTCTTGGAGACACAATAGACTACATGAAAGAGCTTTTGGAAAGAATCAGCAAGTTGCAAGAAGAGAAAACTGAAGAGGGTACAAATCAGTTCAGCTTAATAGGCATCAACAAGGACCTAAACCCAAGTGAGGTCTTGGTGAGAAATTCCCCCAAGTTTGATGTGGAGAGGAGAGACATGGACACCAGAATAGACATCTGCTGTGCAGCCAAGCCAGGATTGCTGCTTTCAACAGTGAGCACTATAGAAGCACTTGGCCTTGAAATTCAGCAGTGTGTTATAAGCTGCTTCAATGATTTTTCGTTGCAAGCTTCATGTTCAGAGGGAGCGGAGCAGAGAACAATGATTAATTCTGAGGAAATAAAGCAAGCATTGTTCAGAAATGCAGGGTATGGAGGGAGATGCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009685 GO:0009889 GO:0009987 GO:0010371 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0031323 GO:0031326 GO:0032350 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0045487 GO:0046395 GO:0046885 GO:0046890 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0062012 GO:0065007 GO:0065008 GO:0071704 GO:0080090 GO:0140110 GO:1901575 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

367

Amino Acids

41.12

Weight (kDa)

4.72

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	200 - 243	6.7e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	286 - 358	3e-08	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	974
AccBSI	CCGCTC	1 cut(s)	1022
AciI	CCGC	2 cut(s)	634, 1022
AcsI	RAATTY	4 cut(s)	170, 388, 838, 957
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	448, 775
AfeI	AGCGCT	1 cut(s)	623
AfiI	CCNNNNNNNGG	3 cut(s)	173, 364, 823
AgsI	TTSAA	9 cut(s)	209, 293, 363, 520, 588, 628, 924, 956, 985
AjnI	CCWGG	1 cut(s)	907
AjuI	GAANNNNNNNTTGG	4 cut(s)	43, 75, 713, 745
Alw21I	GWGCWC	2 cut(s)	273, 935
Alw26I	GTCTC	3 cut(s)	455, 696, 861
Aor51HI	AGCGCT	1 cut(s)	623
AoxI	GGCC	1 cut(s)	949
ApeKI	GCWGC	9 cut(s)	229, 414, 549, 552, 555, 580, 899, 916, 978
ApoI	RAATTY	4 cut(s)	170, 388, 838, 957
AseI	ATTAAT	1 cut(s)	1041
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	1 cut(s)	808
AsuHPI	GGTGA	2 cut(s)	512, 844
AvaII	GGWCC	1 cut(s)	808
Bbv12I	GWGCWC	2 cut(s)	273, 935
BbvI	GCAGC	9 cut(s)	241, 426, 536, 564, 567, 592, 903, 911, 965
BccI	CCATC	2 cut(s)	251, 673
BciT130I	CCWGG	1 cut(s)	909
BcoDI	GTCTC	3 cut(s)	455, 696, 861
BfaI	CTAG	2 cut(s)	38, 149
BfmI	CTRYAG	3 cut(s)	489, 550, 936
BfoI	RGCGCY	1 cut(s)	625
BisI	GCNGC	9 cut(s)	230, 415, 550, 553, 556, 581, 900, 917, 979
BlsI	GCNGC	9 cut(s)	231, 416, 551, 554, 557, 582, 901, 918, 980
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	909
Bme18I	GGWCC	1 cut(s)	808
BmgT120I	GGNCC	1 cut(s)	808
BmrFI	CCNGG	1 cut(s)	909
BmrI	ACTGGG	1 cut(s)	137
BmsI	GCATC	2 cut(s)	807, 1085
BmuI	ACTGGG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 364, 823
Bse1I	ACTGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	909
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	239, 379
BseLI	CCNNNNNNNGG	3 cut(s)	173, 364, 823
BseMII	CTCAG	5 cut(s)	186, 216, 276, 661, 1038
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	3 cut(s)	44, 392, 877
BseXI	GCAGC	9 cut(s)	241, 426, 536, 564, 567, 592, 903, 911, 965
BseYI	CCCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	1 cut(s)	951
BsiHKAI	GWGCWC	2 cut(s)	273, 935
BslFI	GGGAC	2 cut(s)	263, 644
BslI	CCNNNNNNNGG	3 cut(s)	173, 364, 823
BsmAI	GTCTC	3 cut(s)	455, 696, 861
BsmFI	GGGAC	2 cut(s)	263, 644
BsnI	GGCC	1 cut(s)	951
Bsp1286I	GDGCHC	2 cut(s)	273, 935
Bsp143I	GATC	3 cut(s)	346, 493, 650
BspACI	CCGC	2 cut(s)	634, 1022
BspANI	GGCC	1 cut(s)	951
BspCNI	CTCAG	5 cut(s)	187, 217, 277, 660, 1039
BspMAI	CTGCAG	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	1022
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	3 cut(s)	346, 493, 650
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	909
Bst4CI	ACNGT	3 cut(s)	277, 446, 928
Bst6I	CTCTTC	5 cut(s)	46, 79, 426, 750, 762
BstC8I	GCNNGC	5 cut(s)	234, 560, 674, 1002, 1062
BstDEI	CTNAG	6 cut(s)	195, 225, 285, 564, 647, 1047
BstF5I	GGATG	2 cut(s)	239, 379
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	3 cut(s)	349, 496, 653
BstMAI	GTCTC	3 cut(s)	455, 696, 861
BstMBI	GATC	3 cut(s)	346, 493, 650
BstMWI	GCNNNNNNNGC	3 cut(s)	555, 795, 913
BstNI	CCWGG	1 cut(s)	909
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	1 cut(s)	907
BstSFI	CTRYAG	3 cut(s)	489, 550, 936
BstV1I	GCAGC	9 cut(s)	241, 426, 536, 564, 567, 592, 903, 911, 965
BsuRI	GGCC	1 cut(s)	951
BtsCI	GGATG	2 cut(s)	239, 379
BtsI	GCAGTG	1 cut(s)	971
BtsIMutI	CAGTG	3 cut(s)	222, 933, 971
Cac8I	GCNNGC	5 cut(s)	234, 560, 674, 1002, 1062
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	1 cut(s)	808
Csp6I	GTAC	2 cut(s)	447, 774
CviAII	CATG	6 cut(s)	17, 497, 505, 718, 871, 1008
CviQI	GTAC	2 cut(s)	447, 774
DdeI	CTNAG	6 cut(s)	195, 225, 285, 564, 647, 1047
DpnI	GATC	3 cut(s)	348, 495, 652
DpnII	GATC	3 cut(s)	346, 493, 650
Eam1104I	CTCTTC	5 cut(s)	46, 79, 426, 750, 762
EarI	CTCTTC	5 cut(s)	46, 79, 426, 750, 762
Eco130I	CCWWGG	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	808
Eco47III	AGCGCT	1 cut(s)	623
Eco57I	CTGAAG	1 cut(s)	786
EcoO109I	RGGNCCY	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	907
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	6 cut(s)	20, 500, 508, 721, 874, 1011
FaqI	GGGAC	2 cut(s)	263, 644
FatI	CATG	6 cut(s)	16, 496, 504, 717, 870, 1007
Fnu4HI	GCNGC	9 cut(s)	230, 415, 550, 553, 556, 581, 900, 917, 979
FokI	GGATG	2 cut(s)	226, 386
Fsp4HI	GCNGC	9 cut(s)	230, 415, 550, 553, 556, 581, 900, 917, 979
FspBI	CTAG	2 cut(s)	38, 149
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	9 cut(s)	230, 415, 550, 553, 556, 581, 900, 917, 979
GsaI	CCCAGC	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	1 cut(s)	951
HhaI	GCGC	1 cut(s)	624
Hin1II	CATG	6 cut(s)	20, 500, 508, 721, 874, 1011
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HindIII	AAGCTT	1 cut(s)	1002
HinfI	GANTC	3 cut(s)	122, 293, 738
HphI	GGTGA	2 cut(s)	512, 844
Hpy188I	TCNGA	4 cut(s)	650, 1015, 1048, 1073
Hpy188III	TCNNGA	1 cut(s)	350
HpyAV	CCTTC	5 cut(s)	253, 369, 569, 594, 609
HpyCH4III	ACNGT	3 cut(s)	277, 446, 928
HpyCH4V	TGCA	6 cut(s)	453, 552, 751, 899, 1000, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	555, 795, 913
HpyF3I	CTNAG	6 cut(s)	195, 225, 285, 564, 647, 1047
Hsp92II	CATG	6 cut(s)	20, 500, 508, 721, 874, 1011
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	3 cut(s)	346, 493, 650
LmnI	GCTCC	6 cut(s)	4, 31, 46, 114, 1019, 1024
Lsp1109I	GCAGC	9 cut(s)	241, 426, 536, 564, 567, 592, 903, 911, 965
LweI	GCATC	2 cut(s)	807, 1085
MaeI	CTAG	2 cut(s)	38, 149
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	3 cut(s)	348, 495, 652
MbiI	CCGCTC	1 cut(s)	1022
MboI	GATC	3 cut(s)	346, 493, 650
MboII	GAAGA	7 cut(s)	63, 66, 443, 621, 624, 767, 779
MhlI	GDGCHC	2 cut(s)	273, 935
MluCI	AATT	7 cut(s)	45, 127, 170, 388, 838, 957, 1042
MmeI	TCCRAC	2 cut(s)	41, 408
MseI	TTAA	3 cut(s)	84, 791, 1041
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	2 cut(s)	284, 417
MspR9I	CCNGG	1 cut(s)	909
MvaI	CCWGG	1 cut(s)	909
MwoI	GCNNNNNNNGC	3 cut(s)	555, 795, 913
NdeII	GATC	3 cut(s)	346, 493, 650
NlaIII	CATG	6 cut(s)	20, 500, 508, 721, 874, 1011
NmuCI	GTSAC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	508
PfeI	GAWTC	3 cut(s)	122, 293, 738
PkrI	GCNGC	9 cut(s)	231, 416, 551, 554, 557, 582, 901, 918, 980
PpuMI	RGGWCCY	1 cut(s)	808
PshBI	ATTAAT	1 cut(s)	1041
PsiI	TTATAA	1 cut(s)	974
Psp5II	RGGWCCY	1 cut(s)	808
Psp6I	CCWGG	1 cut(s)	907
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	907
PspPI	GGNCC	1 cut(s)	808
PspPPI	RGGWCCY	1 cut(s)	808
PstI	CTGCAG	1 cut(s)	554
PvuII	CAGCTG	2 cut(s)	284, 417
RsaI	GTAC	2 cut(s)	448, 775
RsaNI	GTAC	2 cut(s)	447, 774
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	84, 791, 1041
SatI	GCNGC	9 cut(s)	230, 415, 550, 553, 556, 581, 900, 917, 979
Sau3AI	GATC	3 cut(s)	346, 493, 650
Sau96I	GGNCC	1 cut(s)	808
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	909
SduI	GDGCHC	2 cut(s)	273, 935
SfaNI	GCATC	2 cut(s)	807, 1085
SfcI	CTRYAG	3 cut(s)	489, 550, 936
SinI	GGWCC	1 cut(s)	808
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	7 cut(s)	45, 127, 170, 388, 838, 957, 1042
SsiI	CCGC	2 cut(s)	634, 1022
SspMI	CTAG	2 cut(s)	38, 149
StyD4I	CCNGG	1 cut(s)	907
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	277, 446, 928
TasI	AATT	7 cut(s)	45, 127, 170, 388, 838, 957, 1042
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	3 cut(s)	122, 293, 738
Tru1I	TTAA	3 cut(s)	84, 791, 1041
Tru9I	TTAA	3 cut(s)	84, 791, 1041
TscAI	CASTG	3 cut(s)	229, 933, 971
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	9 cut(s)	229, 414, 549, 552, 555, 580, 899, 916, 978
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	116, 734, 996
TspRI	CASTG	3 cut(s)	229, 933, 971
VpaK11BI	GGWCC	1 cut(s)	808
VspI	ATTAAT	1 cut(s)	1041
XapI	RAATTY	4 cut(s)	170, 388, 838, 957
XceI	RCATGY	1 cut(s)	508
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XspI	CTAG	2 cut(s)	38, 149
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.