Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002347

Physical Location & Seq

Genomic Coordinates Reverse (-)

48904955 .. 48906918

Gene Structure 1964 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1392100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGTTGAATGAACATGGTTTCTTAGAGGAGTTATTAGCTCTAAGAAGAGACAGTAGTAGTAGCAGTACATGGGAAACCAATATTCCAACAGAAATGAATGAATTGTTGTCTAGTAGTGGTAGCTGGGGAAATTTTGATTACTTTGATCAACAAAACCCTTCATCTTCTTTCCTCCCAATTTCTTCCTGCATCCATGATTTCTCACCTTCATTTGAACCCAACTTTAACAGCAGCAACTTCAACAGTAACACCACCGTCAATCAAGAAGTCTATTATCCCTTAGGCTTTGGCATTACTGATGAAGCACTGCTCTCAGCTCACCAGCAGGTCACTGACTCATCCTACAACACCCTCGACACACCACCGTTTCCGGTCCCGGAAGACAATCCGTGGTCCATGCTTGAAGAAGAAGAGTTGGGTTTCCTTGGTGATGAAATGCACAACTTGGAGACTCAAGCTGAAGCTGCTGGCTGCAAAGTGGAGCCAACTCAGTCCCCTGACCAAGTCCCAGCTTTCAACATTGGAATGTGTGTGGAGAGAAATACCAGAGCTAATAATAAGAAGTTGCAGGGGCAGCCATCAAAGAATCTAATGGCTGAGAGAAGAAGAAGAAAGCGATTGAACGACCGGCTTTCGATGCTAAGATCAATTGTGCCCAAGATAAGTAAGATGGATAGAACATCTATACTTGGAGACACTATAGATTACATGAAGGAGCTCCTAGAGAGAATCAACAATTTGCAACAAGAAATTGAAGCGGATCCAGATCAGTTAAATGTGATGAGCCTTTTCAAGGATATAAAACCAAATGAAATGCTAGTCAGGAACTCACCTAAGTTTGATGTGCAAAGGAGGAATGTGGACACCAAGATTGACATATGCTGTACAGGAAAGCCAGGGCTGTTGTTATCAACAGTATCTACCTTGGAAGCCTTAGGCCTTGAGATTCAACAGTGTGTTATTAGCTGCTTCAATGACTTTGCAATGCAAGCTGCTTGTTCAGAGGATTTTGATCAGAGAACAATGGTAACTTCTGAAGACATAAAGCAAGCACTATATAGAAATGCAGGATATGGAGGAAGATGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

365

Amino Acids

41.15

Weight (kDa)

4.62

Isoelectric Point (pI)

58.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	199 - 241	7.5e-10	Helix-loop-helix DNA-binding domain
bHLH-TF_ACT-like_plant	PF22754	290 - 355	9e-08	Plant bHLH transcription factor, ACT-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002347)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10570 AT5G65640 AT5G65640
fragaria_vesca	FvH4_1g18930 FvH4_1g18930 FvH4_1g18930 FvH4_5g33810 FvH4_5g33810 FvH4_5g33810
malus_domestica	MD01G1045500.v1.1 MD08G1207700.v1.1 MD15G1306400.v1.1 MD15G1392100.v1.1
prunus_persica	Prupe.1G540400_v2.0.a1 Prupe.6G210200_v2.0.a1
pyrus_communis	pycom01g07160 pycom08g17980 pycom15g27080 pycom15g35280
rosa_chinensis	RchiOBHm_Chr2g0109941 RchiOBHm_Chr7g0233161
rosa_laevigata	RLG00000001291 RLG00000017771
rosa_multiflora	Rmu_sc0002061.1_g000003 Rmu_sc0005173.1_g000020
rosa_roxburghii	Rroxscaffold_2G00133860 Rroxscaffold_3G00227590
rosa_rugosa	Rorug02G0164000 Rorug02G0164100 Rorug07G0279100 Rorug07G0279100 Rorug07G0279200
rosa_samantha	Rh2AG216000 Rh2BG226000 Rh2CG218200 Rh2DG221500 Rh7AG435000 Rh7BG407400 Rh7CG454000 Rh7DG422700
rosa_wichuraiana	Rw2G016680 Rw7G035780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AciI	CCGC	1 cut(s)	761
AclWI	GGATC	2 cut(s)	758, 771
AcsI	RAATTY	1 cut(s)	133
AcuI	CTGAAG	2 cut(s)	483, 1059
AfaI	GTAC	2 cut(s)	70, 889
AfiI	CCNNNNNNNGG	1 cut(s)	796
AjnI	CCWGG	1 cut(s)	898
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	3 cut(s)	45, 446, 690
AlwI	GGATC	2 cut(s)	758, 771
AoxI	GGCC	1 cut(s)	940
ApeKI	GCWGC	6 cut(s)	234, 467, 474, 577, 969, 995
ApoI	RAATTY	1 cut(s)	133
AspS9I	GGNCC	2 cut(s)	376, 396
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	4 cut(s)	198, 314, 443, 825
AvaII	GGWCC	2 cut(s)	376, 396
AxyI	CCTNAGG	2 cut(s)	283, 937
BaeGI	GKGCMC	1 cut(s)	660
BamHI	GGATCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	723
BbsI	GAAGAC	2 cut(s)	390, 1047
Bbv12I	GWGCWC	1 cut(s)	723
BbvI	GCAGC	6 cut(s)	246, 454, 461, 589, 956, 982
BccI	CCATC	2 cut(s)	589, 667
BciT130I	CCWGG	1 cut(s)	900
BclI	TGATCA	2 cut(s)	148, 1015
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	3 cut(s)	45, 446, 690
BfaI	CTAG	3 cut(s)	114, 725, 821
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	235, 468, 475, 578, 970, 996
BlsI	GCNGC	6 cut(s)	236, 469, 476, 579, 971, 997
Bme1390I	CCNGG	2 cut(s)	380, 900
Bme18I	GGWCC	2 cut(s)	376, 396
BmgT120I	GGNCC	2 cut(s)	376, 396
BmiI	GGNNCC	3 cut(s)	378, 486, 765
BmrFI	CCNGG	2 cut(s)	380, 900
BmsI	GCATC	3 cut(s)	201, 630, 1076
BpiI	GAAGAC	2 cut(s)	390, 1047
BpuEI	CTTGAG	2 cut(s)	441, 965
BpuMI	CCSGG	1 cut(s)	380
BsaBI	GATNNNNATC	2 cut(s)	768, 1014
BsaJI	CCNNGG	4 cut(s)	392, 427, 899, 927
BsaWI	WCCGGW	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	796
Bse118I	RCCGGY	1 cut(s)	630
Bse21I	CCTNAGG	2 cut(s)	283, 937
Bse3DI	GCAATG	1 cut(s)	993
Bse8I	GATNNNNATC	2 cut(s)	768, 1014
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	4 cut(s)	392, 427, 899, 927
BseGI	GGATG	2 cut(s)	192, 341
BseJI	GATNNNNATC	2 cut(s)	768, 1014
BseLI	CCNNNNNNNGG	1 cut(s)	796
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	3 cut(s)	330, 506, 591
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	660
BseXI	GCAGC	6 cut(s)	246, 454, 461, 589, 956, 982
BseYI	CCCAGC	2 cut(s)	126, 511
Bsh1285I	CGRYCG	1 cut(s)	631
BshFI	GGCC	1 cut(s)	942
BsiEI	CGRYCG	1 cut(s)	631
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	3 cut(s)	374, 380, 631
BslFI	GGGAC	3 cut(s)	362, 481, 494
BslI	CCNNNNNNNGG	1 cut(s)	796
BsmAI	GTCTC	3 cut(s)	45, 446, 690
BsmFI	GGGAC	3 cut(s)	362, 481, 494
BsnI	GGCC	1 cut(s)	942
Bsp1286I	GDGCHC	2 cut(s)	660, 723
Bsp1407I	TGTACA	1 cut(s)	887
Bsp143I	GATC	5 cut(s)	148, 647, 763, 769, 1015
BspACI	CCGC	1 cut(s)	761
BspANI	GGCC	1 cut(s)	942
BspCNI	CTCAG	3 cut(s)	329, 505, 592
BspLI	GGNNCC	3 cut(s)	378, 486, 765
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	758, 771
BsrDI	GCAATG	1 cut(s)	993
BsrFI	RCCGGY	1 cut(s)	630
BsrGI	TGTACA	1 cut(s)	887
BssAI	RCCGGY	1 cut(s)	630
BssECI	CCNNGG	4 cut(s)	392, 427, 899, 927
BssMI	GATC	5 cut(s)	148, 647, 763, 769, 1015
BssT1I	CCWWGG	2 cut(s)	427, 927
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	6 cut(s)	56, 248, 259, 369, 919, 957
Bst6I	CTCTTC	2 cut(s)	43, 408
BstAUI	TGTACA	1 cut(s)	887
BstC8I	GCNNGC	3 cut(s)	472, 993, 1053
BstDEI	CTNAG	9 cut(s)	25, 44, 283, 316, 492, 600, 644, 837, 937
BstDSI	CCRYGG	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	2 cut(s)	192, 341
BstKTI	GATC	5 cut(s)	151, 650, 766, 772, 1018
BstMAI	GTCTC	3 cut(s)	45, 446, 690
BstMBI	GATC	5 cut(s)	148, 647, 763, 769, 1015
BstMCI	CGRYCG	1 cut(s)	631
BstMWI	GCNNNNNNNGC	4 cut(s)	467, 577, 640, 992
BstNI	CCWGG	1 cut(s)	900
BstSCI	CCNGG	2 cut(s)	378, 898
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	660
BstV1I	GCAGC	6 cut(s)	246, 454, 461, 589, 956, 982
BstV2I	GAAGAC	2 cut(s)	390, 1047
BstX2I	RGATCY	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	763
Bsu36I	CCTNAGG	2 cut(s)	283, 937
BsuRI	GGCC	1 cut(s)	942
BtgI	CCRYGG	1 cut(s)	392
BtsCI	GGATG	2 cut(s)	192, 341
BtsI	GCAGTG	1 cut(s)	308
BtsIMutI	CAGTG	3 cut(s)	308, 333, 962
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	472, 993, 1053
Cfr10I	RCCGGY	1 cut(s)	630
Cfr13I	GGNCC	2 cut(s)	376, 396
Csp6I	GTAC	2 cut(s)	69, 888
CviAII	CATG	5 cut(s)	17, 72, 197, 400, 712
CviQI	GTAC	2 cut(s)	69, 888
DdeI	CTNAG	9 cut(s)	25, 44, 283, 316, 492, 600, 644, 837, 937
DpnI	GATC	5 cut(s)	150, 649, 765, 771, 1017
DpnII	GATC	5 cut(s)	148, 647, 763, 769, 1015
Eam1104I	CTCTTC	2 cut(s)	43, 408
EarI	CTCTTC	2 cut(s)	43, 408
Ecl136II	GAGCTC	1 cut(s)	721
Eco130I	CCWWGG	2 cut(s)	427, 927
Eco147I	AGGCCT	1 cut(s)	942
Eco24I	GRGCYC	1 cut(s)	723
Eco47I	GGWCC	2 cut(s)	376, 396
Eco53kI	GAGCTC	1 cut(s)	721
Eco57I	CTGAAG	2 cut(s)	483, 1059
Eco81I	CCTNAGG	2 cut(s)	283, 937
EcoICRI	GAGCTC	1 cut(s)	721
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	2 cut(s)	427, 927
EcoT38I	GRGCYC	1 cut(s)	723
ErhI	CCWWGG	2 cut(s)	427, 927
FaeI	CATG	5 cut(s)	20, 75, 200, 403, 715
FaqI	GGGAC	3 cut(s)	362, 481, 494
FatI	CATG	5 cut(s)	16, 71, 196, 399, 711
FauNDI	CATATG	1 cut(s)	881
FbaI	TGATCA	2 cut(s)	148, 1015
Fnu4HI	GCNGC	6 cut(s)	235, 468, 475, 578, 970, 996
FokI	GGATG	2 cut(s)	179, 328
FriOI	GRGCYC	1 cut(s)	723
Fsp4HI	GCNGC	6 cut(s)	235, 468, 475, 578, 970, 996
FspBI	CTAG	3 cut(s)	114, 725, 821
GluI	GCNGC	6 cut(s)	235, 468, 475, 578, 970, 996
GsaI	CCCAGC	2 cut(s)	130, 515
HaeIII	GGCC	1 cut(s)	942
HapII	CCGG	3 cut(s)	374, 380, 631
Hin1II	CATG	5 cut(s)	20, 75, 200, 403, 715
HinfI	GANTC	5 cut(s)	338, 454, 589, 732, 949
HpaII	CCGG	3 cut(s)	374, 380, 631
HphI	GGTGA	4 cut(s)	198, 314, 443, 825
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	3 cut(s)	1006, 1020, 1039
Hpy188III	TCNNGA	3 cut(s)	266, 767, 826
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	3 cut(s)	171, 219, 709
HpyCH4III	ACNGT	6 cut(s)	56, 248, 259, 369, 919, 957
HpyCH4V	TGCA	9 cut(s)	192, 442, 477, 571, 745, 850, 986, 991, 1070
HpyF10VI	GCNNNNNNNGC	4 cut(s)	467, 577, 640, 992
HpyF3I	CTNAG	9 cut(s)	25, 44, 283, 316, 492, 600, 644, 837, 937
Hsp92II	CATG	5 cut(s)	20, 75, 200, 403, 715
Ksp22I	TGATCA	2 cut(s)	148, 1015
Kzo9I	GATC	5 cut(s)	148, 647, 763, 769, 1015
LmnI	GCTCC	3 cut(s)	484, 718, 726
Lsp1109I	GCAGC	6 cut(s)	246, 454, 461, 589, 956, 982
LweI	GCATC	3 cut(s)	201, 630, 1076
MaeI	CTAG	3 cut(s)	114, 725, 821
MaeIII	GTNAC	3 cut(s)	248, 331, 1030
MalI	GATC	5 cut(s)	150, 649, 765, 771, 1017
MboI	GATC	5 cut(s)	148, 647, 763, 769, 1015
MfeI	CAATTG	1 cut(s)	651
MflI	RGATCY	1 cut(s)	763
MhlI	GDGCHC	2 cut(s)	660, 723
MluCI	AATT	6 cut(s)	104, 133, 180, 651, 739, 753
MlyI	GAGTC	2 cut(s)	332, 448
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	6 cut(s)	22, 185, 365, 849, 1000, 1073
MseI	TTAA	2 cut(s)	228, 776
MslI	CAYNNNNRTG	1 cut(s)	527
MspI	CCGG	3 cut(s)	374, 380, 631
MspR9I	CCNGG	2 cut(s)	380, 900
MunI	CAATTG	1 cut(s)	651
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	4 cut(s)	467, 577, 640, 992
NciI	CCSGG	1 cut(s)	380
NdeI	CATATG	1 cut(s)	881
NdeII	GATC	5 cut(s)	148, 647, 763, 769, 1015
NlaIII	CATG	5 cut(s)	20, 75, 200, 403, 715
NlaIV	GGNNCC	3 cut(s)	378, 486, 765
NmuCI	GTSAC	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	942
PfeI	GAWTC	3 cut(s)	589, 732, 949
PflFI	GACNNNGTC	1 cut(s)	506
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	6 cut(s)	236, 469, 476, 579, 971, 997
PleI	GAGTC	2 cut(s)	332, 448
PpsI	GAGTC	2 cut(s)	332, 448
Psp124BI	GAGCTC	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	898
PspFI	CCCAGC	2 cut(s)	126, 511
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	3 cut(s)	378, 486, 765
PspPI	GGNCC	2 cut(s)	376, 396
PsuI	RGATCY	1 cut(s)	763
PsyI	GACNNNGTC	1 cut(s)	506
RsaI	GTAC	2 cut(s)	70, 889
RsaNI	GTAC	2 cut(s)	69, 888
RseI	CAYNNNNRTG	1 cut(s)	527
SacI	GAGCTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	228, 776
SatI	GCNGC	6 cut(s)	235, 468, 475, 578, 970, 996
Sau3AI	GATC	5 cut(s)	148, 647, 763, 769, 1015
Sau96I	GGNCC	2 cut(s)	376, 396
SchI	GAGTC	2 cut(s)	332, 448
ScrFI	CCNGG	2 cut(s)	380, 900
SduI	GDGCHC	2 cut(s)	660, 723
SfaNI	GCATC	3 cut(s)	201, 630, 1076
SfcI	CTRYAG	1 cut(s)	702
SinI	GGWCC	2 cut(s)	376, 396
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	456, 944
SmoI	CTYRAG	2 cut(s)	456, 944
Sse9I	AATT	6 cut(s)	104, 133, 180, 651, 739, 753
SseBI	AGGCCT	1 cut(s)	942
SsiI	CCGC	1 cut(s)	761
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	3 cut(s)	114, 725, 821
SstI	GAGCTC	1 cut(s)	723
StuI	AGGCCT	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	378, 898
StyI	CCWWGG	2 cut(s)	427, 927
TaaI	ACNGT	6 cut(s)	56, 248, 259, 369, 919, 957
TaqI	TCGA	2 cut(s)	357, 638
TasI	AATT	6 cut(s)	104, 133, 180, 651, 739, 753
TatI	WGTACW	2 cut(s)	68, 887
TfiI	GAWTC	3 cut(s)	589, 732, 949
Tru1I	TTAA	2 cut(s)	228, 776
Tru9I	TTAA	2 cut(s)	228, 776
TscAI	CASTG	3 cut(s)	315, 340, 962
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	6 cut(s)	234, 467, 474, 577, 969, 995
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	9 cut(s)	27, 113, 117, 153, 201, 318, 450, 728, 828
TspGWI	ACGGA	1 cut(s)	381
TspRI	CASTG	3 cut(s)	315, 340, 962
Tth111I	GACNNNGTC	1 cut(s)	506
VpaK11BI	GGWCC	2 cut(s)	376, 396
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	1 cut(s)	133
XspI	CTAG	3 cut(s)	114, 725, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.