Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

5185651 .. 5187706

Gene Structure 2056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCCGGACTTCTAGCTTGGGCTGCCGATGTCGTCGGTAAAAATGGAAAAGAAGGAGACGATGAGAAGGATCGGATCCCATTGGTTTTCACGGAGGAGCAGCAGAAATACGTCGATGAGCTTGGCCGAAAAGCGACAAACCTCAGCCGTTCGATCCAAGATCTGCGGCTCAGATTGCCTCCACCGGATATCTCCCAGCGTCTACCTGACCTTCATGCTCACTCCCTTGCGTCCAATGCCGCTCTCACTCTTCAGCTTGATTCGCACTCCGCTACTCGTGAACAGGCACACATGAGAGAGCAGACACTGCTGGAAGAAAATAGTGCATATGAGAATGCAATATCAACCTGTGAGACAAAAATAGAAGAGAAGAGGAATGAAGCAGATTCTCTTCTTAGAAAGTTGAAGGAGCTAGAAGCTGTAGAGGAAAACTTGAAAACTGAGCAGGATAATGCACAAGCTTCTCTAGATGCAAGGCAGTCCAAAAGCTCTAGTGAAACTGTTATTCAGCCTGATGGGAATGGAAAAGATGGAGCAGATACAGAGGCCATGAAGTCCTTTATGCTAGAGAAGTTGGAGAGCAAAAAGAACGATATGAGTTTAATGGAAGAAAAAGTTCAGGATTTAGAGAGGAGTTGGGCTGTTATACAGGAAAGAGCACTGAAGCAGCCTTCTCCAGCTCAGAGAGAGAAGACACTGGATAAACAACTTCATAGCCTAATCGAGCAATTAGCTGCAAAGCAGGCACAAGCAGAGGGGATTGTTGGTGAGATTCATCTAAATGAGATGGAGTTAGAGAGACTAAACAATTTATGGAGAAGATATGAAAGCTTTAACGTTGAAGGGAACGCTGCGAGGAACAGATTCAAGAGAACAAATTCAGATAGAGAATTTACATCAGACCACGAAGTTGATGGTCATTCCTACCTTCCATATTCATCTGCTACAAGAAATGGGACCCAAACAAGGCTTATGTATCTCAGGTCAGCTTTTGTCGTCTACATTTTGGCTTTGCAAGTCCTGGTTTTCATCAGAATTTCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.57

Weight (kDa)

5.33

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	242
AccI	GTMKAC	2 cut(s)	202, 999
AciI	CCGC	3 cut(s)	166, 240, 270
AclI	AACGTT	1 cut(s)	837
AclWI	GGATC	4 cut(s)	70, 78, 83, 148
AcoI	YGGCCR	2 cut(s)	3, 124
AcsI	RAATTY	3 cut(s)	877, 890, 1035
AcuI	CTGAAG	2 cut(s)	236, 683
AfiI	CCNNNNNNNGG	1 cut(s)	966
AgsI	TTSAA	4 cut(s)	406, 436, 842, 868
AjnI	CCWGG	1 cut(s)	1020
Alw21I	GWGCWC	1 cut(s)	661
Alw26I	GTCTC	3 cut(s)	51, 347, 793
AlwI	GGATC	4 cut(s)	70, 78, 83, 148
AlwNI	CAGNNNCTG	1 cut(s)	307
AoxI	GGCC	3 cut(s)	3, 124, 546
ApeKI	GCWGC	5 cut(s)	23, 100, 667, 734, 851
ApoI	RAATTY	3 cut(s)	877, 890, 1035
Asp700I	GAANNNNTTC	3 cut(s)	615, 863, 877
AspS9I	GGNCC	1 cut(s)	957
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	957
BamHI	GGATCC	1 cut(s)	75
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	661
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	5 cut(s)	10, 112, 679, 721, 838
BccI	CCATC	4 cut(s)	509, 524, 781, 908
BceAI	ACGGC	1 cut(s)	132
BciT130I	CCWGG	1 cut(s)	1022
BcoDI	GTCTC	3 cut(s)	51, 347, 793
BfaI	CTAG	5 cut(s)	14, 413, 467, 492, 566
BfmI	CTRYAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	7 cut(s)	24, 101, 167, 240, 668, 735, 852
BlsI	GCNGC	7 cut(s)	25, 102, 168, 241, 669, 736, 853
Bme1390I	CCNGG	1 cut(s)	1022
Bme18I	GGWCC	1 cut(s)	957
BmgT120I	GGNCC	1 cut(s)	957
BmiI	GGNNCC	3 cut(s)	77, 958, 959
BmrFI	CCNGG	1 cut(s)	1022
BmsI	GCATC	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	698
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	143
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	966
Bse1I	ACTGG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	1022
BseLI	CCNNNNNNNGG	1 cut(s)	966
BseMII	CTCAG	5 cut(s)	157, 184, 432, 695, 994
BseNI	ACTGG	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	110, 646
BseXI	GCAGC	5 cut(s)	10, 112, 679, 721, 838
BseYI	CCCAGC	1 cut(s)	195
BshFI	GGCC	3 cut(s)	5, 126, 548
BsiHKAI	GWGCWC	1 cut(s)	661
BsiSI	CCGG	2 cut(s)	6, 185
BslFI	GGGAC	1 cut(s)	970
BslI	CCNNNNNNNGG	1 cut(s)	966
BsmAI	GTCTC	3 cut(s)	51, 347, 793
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	970
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	5, 126, 548
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	4 cut(s)	70, 75, 153, 160
BspACI	CCGC	3 cut(s)	166, 240, 270
BspANI	GGCC	3 cut(s)	5, 126, 548
BspCNI	CTCAG	5 cut(s)	156, 183, 433, 694, 993
BspLI	GGNNCC	3 cut(s)	77, 958, 959
BspPI	GGATC	4 cut(s)	70, 78, 83, 148
BsrBI	CCGCTC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	702
BssMI	GATC	4 cut(s)	70, 75, 153, 160
BssSI	CACGAG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	1022
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	4 cut(s)	255, 360, 365, 396
BstAPI	GCANNNNNTGC	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	744
BstDEI	CTNAG	6 cut(s)	143, 170, 395, 441, 681, 980
BstKTI	GATC	4 cut(s)	73, 78, 156, 163
BstMAI	GTCTC	3 cut(s)	51, 347, 793
BstMBI	GATC	4 cut(s)	70, 75, 153, 160
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 175, 236, 262, 307, 743
BstNI	CCWGG	1 cut(s)	1022
BstSCI	CCNGG	1 cut(s)	1020
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	10, 112, 679, 721, 838
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	2 cut(s)	75, 160
BstYI	RGATCY	2 cut(s)	75, 160
BsuRI	GGCC	3 cut(s)	5, 126, 548
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	3 cut(s)	305, 659, 695
Cac8I	GCNNGC	1 cut(s)	744
CaiI	CAGNNNCTG	1 cut(s)	307
Cfr13I	GGNCC	1 cut(s)	957
CseI	GACGC	2 cut(s)	188, 219
CviAII	CATG	3 cut(s)	215, 292, 550
DdeI	CTNAG	6 cut(s)	143, 170, 395, 441, 681, 980
DpnI	GATC	4 cut(s)	72, 77, 155, 162
DpnII	GATC	4 cut(s)	70, 75, 153, 160
EaeI	YGGCCR	2 cut(s)	3, 124
Eam1104I	CTCTTC	4 cut(s)	255, 360, 365, 396
EarI	CTCTTC	4 cut(s)	255, 360, 365, 396
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	957
Eco57I	CTGAAG	2 cut(s)	236, 683
EcoO109I	RGGNCCY	1 cut(s)	957
EcoRII	CCWGG	1 cut(s)	1020
EcoRV	GATATC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	3 cut(s)	218, 295, 553
FaqI	GGGAC	1 cut(s)	970
FatI	CATG	3 cut(s)	214, 291, 549
FauNDI	CATATG	1 cut(s)	328
FblI	GTMKAC	2 cut(s)	202, 999
Fnu4HI	GCNGC	7 cut(s)	24, 101, 167, 240, 668, 735, 852
Fsp4HI	GCNGC	7 cut(s)	24, 101, 167, 240, 668, 735, 852
FspBI	CTAG	5 cut(s)	14, 413, 467, 492, 566
GluI	GCNGC	7 cut(s)	24, 101, 167, 240, 668, 735, 852
GsaI	CCCAGC	1 cut(s)	199
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	5, 126, 548
HapII	CCGG	2 cut(s)	6, 185
HgaI	GACGC	2 cut(s)	188, 219
Hin1II	CATG	3 cut(s)	218, 295, 553
HindIII	AAGCTT	2 cut(s)	459, 829
HinfI	GANTC	4 cut(s)	260, 386, 772, 864
HpaII	CCGG	2 cut(s)	6, 185
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	3 cut(s)	203, 281, 1000
Hpy188I	TCNGA	6 cut(s)	75, 173, 684, 883, 901, 1034
Hpy188III	TCNNGA	4 cut(s)	278, 467, 620, 868
Hpy8I	GTNNAC	3 cut(s)	203, 281, 1000
Hpy99I	CGWCG	2 cut(s)	38, 116
HpyAV	CCTTC	7 cut(s)	47, 61, 221, 400, 681, 836, 938
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4IV	ACGT	2 cut(s)	111, 837
HpyCH4V	TGCA	6 cut(s)	326, 338, 455, 473, 737, 1015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 175, 236, 262, 307, 743
HpyF3I	CTNAG	6 cut(s)	143, 170, 395, 441, 681, 980
HpySE526I	ACGT	2 cut(s)	111, 837
Hsp92II	CATG	3 cut(s)	218, 295, 553
KflI	GGGWCCC	1 cut(s)	957
Kzo9I	GATC	4 cut(s)	70, 75, 153, 160
LmnI	GCTCC	3 cut(s)	97, 409, 533
Lsp1109I	GCAGC	5 cut(s)	10, 112, 679, 721, 838
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	5 cut(s)	14, 413, 467, 492, 566
MaeII	ACGT	2 cut(s)	111, 837
MalI	GATC	4 cut(s)	72, 77, 155, 162
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	4 cut(s)	70, 75, 153, 160
MboII	GAAGA	8 cut(s)	242, 326, 377, 382, 383, 620, 703, 831
MflI	RGATCY	2 cut(s)	75, 160
MhlI	GDGCHC	1 cut(s)	661
MluCI	AATT	5 cut(s)	728, 808, 877, 890, 1035
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	9 cut(s)	88, 152, 189, 366, 418, 538, 624, 748, 849
MroXI	GAANNNNTTC	3 cut(s)	615, 863, 877
MseI	TTAA	2 cut(s)	602, 834
MslI	CAYNNNNRTG	1 cut(s)	780
MspI	CCGG	2 cut(s)	6, 185
MspR9I	CCNGG	1 cut(s)	1022
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	1022
MwoI	GCNNNNNNNGC	6 cut(s)	23, 175, 236, 262, 307, 743
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	4 cut(s)	70, 75, 153, 160
NlaIII	CATG	3 cut(s)	218, 295, 553
NlaIV	GGNNCC	3 cut(s)	77, 958, 959
PctI	GAATGC	1 cut(s)	340
PdmI	GAANNNNTTC	3 cut(s)	615, 863, 877
PfeI	GAWTC	4 cut(s)	260, 386, 772, 864
PkrI	GCNGC	7 cut(s)	25, 102, 168, 241, 669, 736, 853
PpuMI	RGGWCCY	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	837
Psp5II	RGGWCCY	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	1020
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	1020
PspN4I	GGNNCC	3 cut(s)	77, 958, 959
PspPI	GGNCC	1 cut(s)	957
PspPPI	RGGWCCY	1 cut(s)	957
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	75, 160
RseI	CAYNNNNRTG	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	602, 834
SatI	GCNGC	7 cut(s)	24, 101, 167, 240, 668, 735, 852
Sau3AI	GATC	4 cut(s)	70, 75, 153, 160
Sau96I	GGNCC	1 cut(s)	957
ScrFI	CCNGG	1 cut(s)	1022
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	1 cut(s)	957
SmiMI	CAYNNNNRTG	1 cut(s)	780
Sse9I	AATT	5 cut(s)	728, 808, 877, 890, 1035
SsiI	CCGC	3 cut(s)	166, 240, 270
SspMI	CTAG	5 cut(s)	14, 413, 467, 492, 566
StyD4I	CCNGG	1 cut(s)	1020
TaaI	ACNGT	1 cut(s)	502
TaiI	ACGT	2 cut(s)	114, 840
TaqI	TCGA	3 cut(s)	114, 152, 723
TasI	AATT	5 cut(s)	728, 808, 877, 890, 1035
TauI	GCSGC	2 cut(s)	169, 242
TfiI	GAWTC	4 cut(s)	260, 386, 772, 864
Tru1I	TTAA	2 cut(s)	602, 834
Tru9I	TTAA	2 cut(s)	602, 834
TscAI	CASTG	3 cut(s)	312, 666, 702
TseI	GCWGC	5 cut(s)	23, 100, 667, 734, 851
TspDTI	ATGAA	8 cut(s)	203, 393, 566, 701, 764, 840, 927, 1018
TspGWI	ACGGA	1 cut(s)	107
TspRI	CASTG	3 cut(s)	312, 666, 702
VpaK11BI	GGWCC	1 cut(s)	957
XapI	RAATTY	3 cut(s)	877, 890, 1035
XbaI	TCTAGA	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmiI	GTMKAC	2 cut(s)	202, 999
XmnI	GAANNNNTTC	3 cut(s)	615, 863, 877
XspI	CTAG	5 cut(s)	14, 413, 467, 492, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.