Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

5813284 .. 5814507

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1072400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGGGACTCCTAGCATGGGCAGCAGACGTAAAGTGTGTCCTGGACTTGGATCACAAAGCATCTTCTCTCGGCCGTTCGATCCATAACCTCCGGCTCAGACTCCCTCCTTCCGACATCTCTCAGCGCCTCCCTGATCTCCACGCCCACTCCCTGGCTTCCAACGCCGCCCTTGCTCTCCAGTTGAACTCCCATTCCACCACCCGCGAACAGGCATTGCAGGAAGAGAATGCTGCATATGAAAGCGCTGTATCCAATTGTGAAAGTAAAATACAGGAGAGAATTCAAGAAGCAGATTTGCTTAAGAGGAAGCTCACAGAGATGGACGAGAGTGAAGGGAATTTGAGAGATGAACTTGAAAATGCAGAAACCGCATTGGATGCCAGTCGATCTGGCCAATCAGATGAATCCACTGGTGACCCAAATACGACAGTTGAAACAGAAAATGACATTGAAGCTTCAAAGAAGGCTATACTTGAAAAGTTCGAGGAGAGGAAAAAAGACTTGGTCAGTTGCATCTTTCCTTTTGATCTTACAGTAGTTTCATCTTCTCCATTGCAATTGCTTGTTTGTATTTTTGAATTTTATCTTGATTGCTGGAAAGATGTTGTATTCTGTTTGAATTTTATCTTGATTGCTCTACATTTTAGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.34

Weight (kDa)

4.71

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	1 cut(s)	207
AciI	CCGC	4 cut(s)	5, 168, 205, 372
AclWI	GGATC	2 cut(s)	60, 76
AcoI	YGGCCR	2 cut(s)	73, 394
AcsI	RAATTY	4 cut(s)	282, 340, 581, 622
AfeI	AGCGCT	1 cut(s)	247
AfiI	CCNNNNNNNGG	4 cut(s)	19, 49, 154, 211
AflII	CTTAAG	1 cut(s)	302
AgsI	TTSAA	9 cut(s)	187, 287, 359, 437, 455, 462, 479, 581, 622
AjnI	CCWGG	2 cut(s)	42, 153
AjuI	GAANNNNNNNTTGG	2 cut(s)	488, 520
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	3 cut(s)	313, 458, 651
AluI	AGCT	3 cut(s)	313, 458, 651
AlwI	GGATC	2 cut(s)	60, 76
Aor51HI	AGCGCT	1 cut(s)	247
AoxI	GGCC	2 cut(s)	73, 394
ApeKI	GCWGC	2 cut(s)	23, 233
ApoI	RAATTY	4 cut(s)	282, 340, 581, 622
AspLEI	GCGC	2 cut(s)	129, 248
AsuHPI	GGTGA	1 cut(s)	428
BalI	TGGCCA	1 cut(s)	396
BbvI	GCAGC	2 cut(s)	35, 220
BccI	CCATC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	44, 155
BciVI	GTATCC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	2 cut(s)	130, 249
BfrI	CTTAAG	1 cut(s)	302
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	3 cut(s)	24, 168, 234
BlsI	GCNGC	3 cut(s)	25, 169, 235
Bme1390I	CCNGG	2 cut(s)	44, 155
BmrFI	CCNGG	2 cut(s)	44, 155
BmsI	GCATC	3 cut(s)	71, 370, 525
BpmI	CTGGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	153
BsaXI	ACNNNNNCTCC	2 cut(s)	134, 164
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 49, 154, 211
Bse1I	ACTGG	3 cut(s)	181, 384, 418
Bse3DI	GCAATG	2 cut(s)	215, 554
BseBI	CCWGG	2 cut(s)	44, 155
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	4 cut(s)	19, 49, 154, 211
BseMI	GCAATG	2 cut(s)	215, 554
BseMII	CTCAG	2 cut(s)	112, 137
BseNI	ACTGG	3 cut(s)	181, 384, 418
BseRI	GAGGAG	1 cut(s)	503
BseX3I	CGGCCG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	35, 220
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	2 cut(s)	75, 396
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	94
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	4 cut(s)	19, 49, 154, 211
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	75, 396
Bsp143I	GATC	5 cut(s)	52, 81, 136, 389, 529
BspACI	CCGC	4 cut(s)	5, 168, 205, 372
BspANI	GGCC	2 cut(s)	75, 396
BspCNI	CTCAG	2 cut(s)	111, 136
BspFNI	CGCG	1 cut(s)	207
BspPI	GGATC	2 cut(s)	60, 76
BspTI	CTTAAG	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	215, 554
BsrI	ACTGG	3 cut(s)	181, 384, 418
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	5 cut(s)	52, 81, 136, 389, 529
Bst2UI	CCWGG	2 cut(s)	44, 155
Bst4CI	ACNGT	2 cut(s)	433, 538
Bst6I	CTCTTC	1 cut(s)	219
BstAFI	CTTAAG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstDEI	CTNAG	2 cut(s)	98, 123
BstEII	GGTNACC	1 cut(s)	416
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	2 cut(s)	130, 249
BstHHI	GCGC	2 cut(s)	129, 248
BstKTI	GATC	5 cut(s)	55, 84, 139, 392, 532
BstMBI	GATC	5 cut(s)	52, 81, 136, 389, 529
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 164, 173, 371, 380
BstNI	CCWGG	2 cut(s)	44, 155
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	42, 153
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	35, 220
BstZI	CGGCCG	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	75, 396
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	411
CfoI	GCGC	2 cut(s)	129, 248
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	8 cut(s)	75, 97, 158, 313, 396, 458, 470, 651
CviKI_1	RGCY	8 cut(s)	75, 97, 158, 313, 396, 458, 470, 651
DdeI	CTNAG	2 cut(s)	98, 123
DpnI	GATC	5 cut(s)	54, 83, 138, 391, 531
DpnII	GATC	5 cut(s)	52, 81, 136, 389, 529
EaeI	YGGCCR	2 cut(s)	73, 394
EagI	CGGCCG	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
EclXI	CGGCCG	1 cut(s)	73
Eco47III	AGCGCT	1 cut(s)	247
Eco52I	CGGCCG	1 cut(s)	73
Eco91I	GGTNACC	1 cut(s)	416
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	42, 153
FaeI	CATG	1 cut(s)	21
FaiI	YATR	5 cut(s)	19, 87, 238, 240, 473
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	1 cut(s)	17
FauI	CCCGC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	238
Fnu4HI	GCNGC	3 cut(s)	24, 168, 234
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	3 cut(s)	24, 168, 234
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	2 cut(s)	128, 247
GluI	GCNGC	3 cut(s)	24, 168, 234
GsuI	CTGGAG	1 cut(s)	164
HaeII	RGCGCY	2 cut(s)	130, 249
HaeIII	GGCC	2 cut(s)	75, 396
HapII	CCGG	1 cut(s)	94
HhaI	GCGC	2 cut(s)	129, 248
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	127, 246
HinP1I	GCGC	2 cut(s)	127, 246
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	3 cut(s)	9, 102, 407
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	101, 115, 403
Hpy188III	TCNNGA	3 cut(s)	287, 590, 631
HpyAV	CCTTC	3 cut(s)	120, 329, 460
HpyCH4III	ACNGT	2 cut(s)	433, 538
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	220, 236, 365, 516, 559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 164, 173, 371, 380
HpyF3I	CTNAG	2 cut(s)	98, 123
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	2 cut(s)	127, 246
Kzo9I	GATC	5 cut(s)	52, 81, 136, 389, 529
Lsp1109I	GCAGC	2 cut(s)	35, 220
LweI	GCATC	3 cut(s)	71, 370, 525
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	54, 83, 138, 391, 531
MboI	GATC	5 cut(s)	52, 81, 136, 389, 529
MboII	GAAGA	3 cut(s)	57, 236, 540
MfeI	CAATTG	2 cut(s)	256, 560
MlsI	TGGCCA	1 cut(s)	396
MluCI	AATT	6 cut(s)	256, 282, 340, 560, 581, 622
MluNI	TGGCCA	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	3, 96
MmeI	TCCRAC	2 cut(s)	138, 186
MnlI	CCTC	6 cut(s)	101, 117, 140, 300, 481, 486
Mox20I	TGGCCA	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	396
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	396
MspCI	CTTAAG	1 cut(s)	302
MspI	CCGG	1 cut(s)	94
MspR9I	CCNGG	2 cut(s)	44, 155
MunI	CAATTG	2 cut(s)	256, 560
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	2 cut(s)	44, 155
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	23, 164, 173, 371, 380
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	5 cut(s)	52, 81, 136, 389, 529
NlaIII	CATG	1 cut(s)	21
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	1 cut(s)	416
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	1 cut(s)	506
PflMI	CCANNNNNTGG	1 cut(s)	154
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	3 cut(s)	25, 169, 235
PleI	GAGTC	2 cut(s)	3, 96
PpsI	GAGTC	2 cut(s)	3, 96
Psp6I	CCWGG	2 cut(s)	42, 153
PspEI	GGTNACC	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	42, 153
PsyI	GACNNNGTC	1 cut(s)	506
RseI	CAYNNNNRTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	3 cut(s)	24, 168, 234
Sau3AI	GATC	5 cut(s)	52, 81, 136, 389, 529
SchI	GAGTC	2 cut(s)	3, 96
ScrFI	CCNGG	2 cut(s)	44, 155
SetI	ASST	5 cut(s)	33, 93, 315, 460, 653
SfaNI	GCATC	3 cut(s)	71, 370, 525
SmiMI	CAYNNNNRTG	1 cut(s)	320
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	6 cut(s)	256, 282, 340, 560, 581, 622
SsiI	CCGC	4 cut(s)	5, 168, 205, 372
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	42, 153
TaaI	ACNGT	2 cut(s)	433, 538
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	80, 388, 486
TasI	AATT	6 cut(s)	256, 282, 340, 560, 581, 622
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	23, 233
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	4 cut(s)	255, 366, 420, 534
TspRI	CASTG	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	506
Van91I	CCANNNNNTGG	1 cut(s)	154
Vha464I	CTTAAG	1 cut(s)	302
XapI	RAATTY	4 cut(s)	282, 340, 581, 622
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.