Rh2CG553800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003438
Physical Location & Seq
Forward (+)
73257912 .. 73260517
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG553800.1

Sequence Viewer

Length: 1047 bp
ATGGCGGGATTGCTAGCATGGGCGGCGGACGTAGTCCGAGCCGGCGGCGGTCAAGGCGACGAAGACGACAATCCCAATTCAATCCCACTGATATTCACACCGGAGCAGCAAAAGTACGCCCTGGACTTGGATTCAAAAGCGGCTTCTCTCAGCCGTTTGATCCATGATCTACGGCTCAGAATCCCTCCGAGCGACATCTCCCAACGCCTTCCTCACCTCCACGCTCACTCCCTCGCTTCCAACGCCGCCCTAGCCCTCCAATTGAACGCCCATTCCTCCACCCGAGAACAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCTTATGAAAAGGCTATATCGAACTGTGCGAGTAAAATACAGGAGAAGATTGAGGAAGTGGAGTTACTAAGGAGGAAGTTAGAGGAAATGGAGGACACTGAAAAGAATTTGATAGATGAGCTGGAAAATGCACAAACAGCATTGGATACCAGTCGATCTCGCAGATCAGATGAAGCTGTTGGCAACTCCAAAACATCAGTTGAAACTGGAGATGACATGGAATCATCAAAGAAAGCTATGCTAGACAAGTTAGAGGAGAGGAAAAGAGAATTGAGTTCAAAGGAAGCAGTAGTTCAAGATTTAGAGAAAAAATGGGGAGAAATTCAAGATAATGCATTGAGCCGGCCTTCTCCAGCTCAAAGAGAGAAGATTCTGGATAAACAGTATCATAGCCTTATTGAGCAACTAGAAGCAAAACAGGCACAAGCAGAAGGCCTAGTTGGTGAAATTCATTTGAAAGAGATGGAGCTAGAAAGATTAAATGGATTGTGGAGGAAGCTTGAAAGCAGCAACAATGAGATGAGTGCTGCTAGAAATCGGTTTGGACGAAGTACATCTGAAAGAGGATCTGCTTCTTCTGACAATATCCTTGACGCTCATCACAAATATGCTGGTGGCCGAACAGAGAATCAGCAGAGGCTCATGCTGCTCAGGTCGATGTTTGTGCTTTACATTTTAGCTTTGCACATCTTAGTCTTCATCAGGATCTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.18

Weight (kDa)

5.52

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 5, 23, 26, 45, 48, 140, 246
AclWI GGATC 3 cut(s) 154, 904, 1043
AcoI YGGCCR 1 cut(s) 946
AcsI RAATTY 3 cut(s) 436, 651, 777
AfaI GTAC 2 cut(s) 116, 883
AfiI CCNNNNNNNGG 2 cut(s) 127, 289
AgsI TTSAA 9 cut(s) 81, 135, 265, 533, 609, 626, 656, 787, 833
AjnI CCWGG 1 cut(s) 120
AjuI GAANNNNNNNTTGG 2 cut(s) 753, 785
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 7 cut(s) 451, 506, 566, 686, 799, 829, 1010
AluI AGCT 7 cut(s) 451, 506, 566, 686, 799, 829, 1010
AlwI GGATC 3 cut(s) 154, 904, 1043
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 4 cut(s) 291, 674, 763, 946
ApeKI GCWGC 5 cut(s) 106, 329, 837, 857, 976
ApoI RAATTY 3 cut(s) 436, 651, 777
AspS9I GGNCC 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 206, 319, 785
AsuNHI GCTAGC 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BbsI GAAGAC 2 cut(s) 69, 1018
BbvI GCAGC 5 cut(s) 118, 316, 844, 849, 963
BccI CCATC 1 cut(s) 787
BceAI ACGGC 2 cut(s) 138, 188
BcgI CGANNNNNNTGC 2 cut(s) 976, 1010
BciT130I CCWGG 1 cut(s) 122
BciVI GTATCC 1 cut(s) 469
BfaI CTAG 7 cut(s) 14, 251, 572, 737, 767, 800, 861
BfuI GTATCC 1 cut(s) 469
BisI GCNGC 9 cut(s) 24, 46, 107, 141, 246, 330, 838, 858, 977
BlsI GCNGC 9 cut(s) 25, 47, 108, 142, 247, 331, 839, 859, 978
Bme1390I CCNGG 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 122
BmrI ACTGGG 1 cut(s) 289
BmtI GCTAGC 1 cut(s) 17
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 2 cut(s) 69, 1018
BpmI CTGGAG 2 cut(s) 558, 666
Bpu10I CCTNAGC 1 cut(s) 980
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 289
Bse118I RCCGGY 2 cut(s) 41, 672
Bse1I ACTGG 3 cut(s) 295, 480, 541
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 120
BseLI CCNNNNNNNGG 2 cut(s) 127, 289
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 3 cut(s) 163, 190, 994
BseNI ACTGG 3 cut(s) 295, 480, 541
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 5 cut(s) 118, 316, 844, 849, 963
BshFI GGCC 4 cut(s) 293, 676, 765, 948
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 3 cut(s) 42, 101, 673
BslI CCNNNNNNNGG 2 cut(s) 127, 289
BsnI GGCC 4 cut(s) 293, 676, 765, 948
BsoBI CYCGRG 1 cut(s) 282
Bsp143I GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
BspACI CCGC 7 cut(s) 5, 23, 26, 45, 48, 140, 246
BspANI GGCC 4 cut(s) 293, 676, 765, 948
BspCNI CTCAG 3 cut(s) 162, 189, 993
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 154, 904, 1043
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 2 cut(s) 41, 672
BsrI ACTGG 3 cut(s) 295, 480, 541
BssAI RCCGGY 2 cut(s) 41, 672
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 2 cut(s) 356, 714
BstC8I GCNNGC 3 cut(s) 15, 43, 674
BstDEI CTNAG 5 cut(s) 149, 176, 398, 980, 1021
BstKTI GATC 6 cut(s) 162, 169, 488, 497, 899, 1038
BstMBI GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
BstMWI GCNNNNNNNGC 7 cut(s) 23, 54, 242, 251, 467, 749, 976
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 118, 316, 844, 849, 963
BstV2I GAAGAC 2 cut(s) 69, 1018
BstX2I RGATCY 2 cut(s) 896, 1035
BstYI RGATCY 2 cut(s) 896, 1035
BsuI GTATCC 1 cut(s) 469
BsuRI GGCC 4 cut(s) 293, 676, 765, 948
BtsIMutI CAGTG 2 cut(s) 86, 426
Cac8I GCNNGC 3 cut(s) 15, 43, 674
Cfr10I RCCGGY 2 cut(s) 41, 672
Cfr13I GGNCC 1 cut(s) 292
CseI GACGC 1 cut(s) 932
Csp6I GTAC 2 cut(s) 115, 882
CviAII CATG 4 cut(s) 18, 164, 547, 973
CviQI GTAC 2 cut(s) 115, 882
DdeI CTNAG 5 cut(s) 149, 176, 398, 980, 1021
DpnI GATC 6 cut(s) 161, 168, 487, 496, 898, 1037
DpnII GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
EaeI YGGCCR 1 cut(s) 946
EciI GGCGGA 1 cut(s) 41
Eco147I AGGCCT 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 282
EcoRII CCWGG 1 cut(s) 120
EcoT22I ATGCAT 1 cut(s) 667
FaeI CATG 4 cut(s) 21, 167, 550, 976
FaiI YATR 9 cut(s) 19, 165, 336, 347, 548, 569, 720, 939, 974
FatI CATG 4 cut(s) 17, 163, 546, 972
Fnu4HI GCNGC 9 cut(s) 24, 46, 107, 141, 246, 330, 838, 858, 977
Fsp4HI GCNGC 9 cut(s) 24, 46, 107, 141, 246, 330, 838, 858, 977
FspBI CTAG 7 cut(s) 14, 251, 572, 737, 767, 800, 861
GluI GCNGC 9 cut(s) 24, 46, 107, 141, 246, 330, 838, 858, 977
GsuI CTGGAG 2 cut(s) 558, 666
HaeIII GGCC 4 cut(s) 293, 676, 765, 948
HapII CCGG 3 cut(s) 42, 101, 673
HgaI GACGC 1 cut(s) 932
Hin1II CATG 4 cut(s) 21, 167, 550, 976
HindIII AAGCTT 1 cut(s) 827
HinfI GANTC 5 cut(s) 131, 180, 551, 700, 958
HpaII CCGG 3 cut(s) 42, 101, 673
HphI GGTGA 3 cut(s) 206, 319, 785
Hpy188I TCNGA 6 cut(s) 38, 179, 189, 499, 889, 910
Hpy188III TCNNGA 4 cut(s) 626, 656, 704, 1033
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 218, 687, 755
HpyCH4III ACNGT 2 cut(s) 356, 714
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 4 cut(s) 316, 461, 665, 1015
HpyF10VI GCNNNNNNNGC 7 cut(s) 23, 54, 242, 251, 467, 749, 976
HpyF3I CTNAG 5 cut(s) 149, 176, 398, 980, 1021
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 4 cut(s) 21, 167, 550, 976
KroI GCCGGC 2 cut(s) 41, 672
KroNI GCCGGC 2 cut(s) 43, 674
Kzo9I GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
LmnI GCTCC 2 cut(s) 103, 796
Lsp1109I GCAGC 5 cut(s) 118, 316, 844, 849, 963
MaeI CTAG 7 cut(s) 14, 251, 572, 737, 767, 800, 861
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 307, 393
MalI GATC 6 cut(s) 161, 168, 487, 496, 898, 1037
MboI GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
MboII GAAGA 5 cut(s) 74, 388, 709, 897, 1018
MfeI CAATTG 1 cut(s) 260
MflI RGATCY 2 cut(s) 896, 1035
MluCI AATT 6 cut(s) 76, 260, 436, 599, 651, 777
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 667
MroNI GCCGGC 2 cut(s) 41, 672
MseI TTAA 1 cut(s) 809
MslI CAYNNNNRTG 1 cut(s) 936
MspI CCGG 3 cut(s) 42, 101, 673
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 7 cut(s) 23, 54, 242, 251, 467, 749, 976
NaeI GCCGGC 2 cut(s) 43, 674
NdeII GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
NgoMIV GCCGGC 2 cut(s) 41, 672
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 4 cut(s) 21, 167, 550, 976
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 667
PceI AGGCCT 1 cut(s) 765
PcsI WCGNNNNNNNCGW 2 cut(s) 356, 874
PdiI GCCGGC 2 cut(s) 43, 674
PfeI GAWTC 5 cut(s) 131, 180, 551, 700, 958
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 9 cut(s) 25, 47, 108, 142, 247, 331, 839, 859, 978
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 292
PsuI RGATCY 2 cut(s) 896, 1035
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 2 cut(s) 116, 883
RsaNI GTAC 2 cut(s) 115, 882
RseI CAYNNNNRTG 1 cut(s) 936
SaqAI TTAA 1 cut(s) 809
SatI GCNGC 9 cut(s) 24, 46, 107, 141, 246, 330, 838, 858, 977
Sau3AI GATC 6 cut(s) 159, 166, 485, 494, 896, 1035
Sau96I GGNCC 1 cut(s) 292
ScrFI CCNGG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 936
Sse9I AATT 6 cut(s) 76, 260, 436, 599, 651, 777
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 7 cut(s) 5, 23, 26, 45, 48, 140, 246
SspMI CTAG 7 cut(s) 14, 251, 572, 737, 767, 800, 861
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 1 cut(s) 120
TaaI ACNGT 2 cut(s) 356, 714
TaiI ACGT 1 cut(s) 33
TaqI TCGA 3 cut(s) 350, 484, 986
TasI AATT 6 cut(s) 76, 260, 436, 599, 651, 777
TatI WGTACW 1 cut(s) 881
TauI GCSGC 4 cut(s) 26, 48, 143, 248
TfiI GAWTC 5 cut(s) 131, 180, 551, 700, 958
Tru1I TTAA 1 cut(s) 809
Tru9I TTAA 1 cut(s) 809
TscAI CASTG 2 cut(s) 93, 433
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 5 cut(s) 106, 329, 837, 857, 976
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 351, 516, 770, 1018
TspRI CASTG 2 cut(s) 93, 433
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 3 cut(s) 436, 651, 777
XspI CTAG 7 cut(s) 14, 251, 572, 737, 767, 800, 861
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.