Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

5820462 .. 5836175

Gene Structure 15714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1072600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCGGGACTGCTAGCATGGGCAGCAGACGTAGTGGGAGGAGGTGGCGGGCAAGACAACGAACAAGACATCCCACTGATATTCACTCAGGAGCAGCAGAGGTATGTCCTGGACTTGGATCACAAAGCATCTTCTCTCGGCCGTTCGATCCAAGACCTCCGGCTCAGACTCCCTCCTTCCGACATCTCCCAGCGCCTCCCTGATCTCCACGCCCACTCCCTCGCTTCCAACGCCGCCCTTGCTCTCCAATTGAACTCCCATTCCACCACCCGCGAACAGGCACAGTTGAGAGAGGTGACATTGCAGGAAGAGAATGCTGCATATGAAAGGGCTATATCCAATTGTGAAAGTAAAATACAGGAGAAAATTCAAGAAGCGGATTTGCTTCAGAGGAAGCTAATGGAGATGGACGAGAGTGAAAGGAATTTGAGAGATGAGCTTGAAAATGCAGAAACCGCATTGGATGCCAGTCGATCTGGCCAATCAGATGAATCCACTGGTGACCCAAATACGACAGTTGAAACTGAAAATGATGTAGAAGCTTCAAATAAGGCTATACTTGAAAAGTTAGAGGAGAGGCATAATGAATTGAGTTCAATGGAAGCAGTAGTGAATGATTTAGAGGAAAGATGGGCAAAAAGTCAAGAAAGTGCATTGAGTCAGCCTTTGCCAGTGCAAAGAGAGAAGATTTTGGATAAACAACTTCACAGCGTAATTGAGCAGCTAGAAGCAAAACAGGCACAAGCAGAAGGCCTGGTCAATGAAATTCATTTGAAAGAGACGGAGTTGGAAAGATTGAATGTGTTGTGGAGGAATCTTGAAAGTAGCAACATAGAAATGAATACTGCTAGAAATAGGTTTGGACGAAGCGCATCAGGAAATGGATCTGCTTCATCTGATTATATCCTTGACGCTCATCATAGAAATGCCGATGGCCGAGCAGAGAATCAGCAGAGGCTCATGCTGCTGAGGTCGGGTTTTGTGCTCTACATTTTAGCTTTGAACATCTTGGTCTTCATCAAGATCTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.6

Weight (kDa)

4.82

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	273
AciI	CCGC	6 cut(s)	5, 48, 234, 271, 377, 456
AclWI	GGATC	3 cut(s)	126, 142, 892
AcoI	YGGCCR	3 cut(s)	139, 478, 934
AcsI	RAATTY	3 cut(s)	366, 424, 765
AcuI	CTGAAG	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	115, 277
AjnI	CCWGG	2 cut(s)	108, 753
AloI	GAACNNNNNNTCC	4 cut(s)	54, 86, 245, 277
AluBI	AGCT	5 cut(s)	397, 439, 542, 724, 998
AluI	AGCT	5 cut(s)	397, 439, 542, 724, 998
Alw21I	GWGCWC	1 cut(s)	987
Alw26I	GTCTC	1 cut(s)	773
AlwI	GGATC	3 cut(s)	126, 142, 892
AoxI	GGCC	4 cut(s)	139, 478, 751, 934
ApeKI	GCWGC	5 cut(s)	23, 94, 317, 721, 964
ApoI	RAATTY	3 cut(s)	366, 424, 765
AspLEI	GCGC	2 cut(s)	195, 872
AsuHPI	GGTGA	2 cut(s)	307, 512
AsuNHI	GCTAGC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	480
BbsI	GAAGAC	1 cut(s)	1006
Bbv12I	GWGCWC	1 cut(s)	987
BbvCI	CCTCAGC	1 cut(s)	968
BbvI	GCAGC	5 cut(s)	35, 106, 304, 733, 951
BccI	CCATC	3 cut(s)	400, 624, 926
BceAI	ACGGC	1 cut(s)	126
BciT130I	CCWGG	2 cut(s)	110, 755
BcoDI	GTCTC	1 cut(s)	773
BfaI	CTAG	3 cut(s)	14, 725, 849
BfoI	RGCGCY	1 cut(s)	196
BglII	AGATCT	1 cut(s)	1023
BisI	GCNGC	6 cut(s)	24, 95, 234, 318, 722, 965
BlsI	GCNGC	6 cut(s)	25, 96, 235, 319, 723, 966
Bme1390I	CCNGG	2 cut(s)	110, 755
BmrFI	CCNGG	2 cut(s)	110, 755
BmsI	GCATC	3 cut(s)	137, 454, 881
BmtI	GCTAGC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	1006
Bpu10I	CCTNAGC	1 cut(s)	968
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 277
Bse1I	ACTGG	3 cut(s)	468, 502, 671
Bse3DI	GCAATG	1 cut(s)	299
BseBI	CCWGG	2 cut(s)	110, 755
BseGI	GGATG	2 cut(s)	69, 469
BseLI	CCNNNNNNNGG	2 cut(s)	115, 277
BseMI	GCAATG	1 cut(s)	299
BseMII	CTCAG	3 cut(s)	101, 178, 959
BseNI	ACTGG	3 cut(s)	468, 502, 671
BseRI	GAGGAG	2 cut(s)	54, 587
BseX3I	CGGCCG	1 cut(s)	139
BseXI	GCAGC	5 cut(s)	35, 106, 304, 733, 951
BseYI	CCCAGC	1 cut(s)	189
Bsh1236I	CGCG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	142
BshFI	GGCC	4 cut(s)	141, 480, 753, 936
BsiEI	CGRYCG	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	987
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	2 cut(s)	115, 277
BsmAI	GTCTC	1 cut(s)	773
BsmBI	CGTCTC	1 cut(s)	773
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	141, 480, 753, 936
Bsp1286I	GDGCHC	1 cut(s)	987
Bsp143I	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
BspACI	CCGC	6 cut(s)	5, 48, 234, 271, 377, 456
BspANI	GGCC	4 cut(s)	141, 480, 753, 936
BspCNI	CTCAG	3 cut(s)	100, 177, 960
BspFNI	CGCG	1 cut(s)	273
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	126, 142, 892
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	468, 502, 671
BssMI	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
Bst2UI	CCWGG	2 cut(s)	110, 755
Bst4CI	ACNGT	2 cut(s)	285, 517
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	2 cut(s)	15, 50
BstDEI	CTNAG	3 cut(s)	87, 164, 968
BstEII	GGTNACC	1 cut(s)	500
BstF5I	GGATG	2 cut(s)	69, 469
BstFNI	CGCG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	2 cut(s)	195, 872
BstKTI	GATC	6 cut(s)	121, 150, 205, 476, 887, 1026
BstMAI	GTCTC	1 cut(s)	773
BstMBI	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
BstMCI	CGRYCG	1 cut(s)	142
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 230, 239, 455, 464, 737, 964
BstNI	CCWGG	2 cut(s)	110, 755
BstPI	GGTNACC	1 cut(s)	500
BstSCI	CCNGG	2 cut(s)	108, 753
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	35, 106, 304, 733, 951
BstV2I	GAAGAC	1 cut(s)	1006
BstX2I	RGATCY	2 cut(s)	884, 1023
BstYI	RGATCY	2 cut(s)	884, 1023
BstZI	CGGCCG	1 cut(s)	139
BsuRI	GGCC	4 cut(s)	141, 480, 753, 936
BtsCI	GGATG	2 cut(s)	69, 469
BtsIMutI	CAGTG	3 cut(s)	74, 495, 678
Cac8I	GCNNGC	2 cut(s)	15, 50
CfoI	GCGC	2 cut(s)	195, 872
CseI	GACGC	1 cut(s)	920
CviAII	CATG	2 cut(s)	18, 961
DdeI	CTNAG	3 cut(s)	87, 164, 968
DpnI	GATC	6 cut(s)	120, 149, 204, 475, 886, 1025
DpnII	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
EaeI	YGGCCR	3 cut(s)	139, 478, 934
EagI	CGGCCG	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EclXI	CGGCCG	1 cut(s)	139
Eco147I	AGGCCT	1 cut(s)	753
Eco52I	CGGCCG	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	371
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoRII	CCWGG	2 cut(s)	108, 753
Esp3I	CGTCTC	1 cut(s)	773
FaeI	CATG	2 cut(s)	21, 964
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	17, 960
FauI	CCCGC	2 cut(s)	41, 278
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	24, 95, 234, 318, 722, 965
FokI	GGATG	2 cut(s)	56, 476
Fsp4HI	GCNGC	6 cut(s)	24, 95, 234, 318, 722, 965
FspBI	CTAG	3 cut(s)	14, 725, 849
GlaI	GCGC	2 cut(s)	194, 871
GluI	GCNGC	6 cut(s)	24, 95, 234, 318, 722, 965
GsaI	CCCAGC	1 cut(s)	193
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	4 cut(s)	141, 480, 753, 936
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	920
HhaI	GCGC	2 cut(s)	195, 872
Hin1II	CATG	2 cut(s)	21, 964
Hin6I	GCGC	2 cut(s)	193, 870
HinP1I	GCGC	2 cut(s)	193, 870
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	5 cut(s)	168, 491, 658, 814, 946
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	2 cut(s)	307, 512
Hpy188I	TCNGA	5 cut(s)	167, 181, 390, 487, 898
Hpy188III	TCNNGA	6 cut(s)	89, 371, 644, 818, 876, 1021
HpyAV	CCTTC	2 cut(s)	186, 743
HpyCH4III	ACNGT	2 cut(s)	285, 517
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	304, 320, 449, 653, 676
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 230, 239, 455, 464, 737, 964
HpyF3I	CTNAG	3 cut(s)	87, 164, 968
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	21, 964
HspAI	GCGC	2 cut(s)	193, 870
Kzo9I	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	5 cut(s)	35, 106, 304, 733, 951
LweI	GCATC	3 cut(s)	137, 454, 881
MaeI	CTAG	3 cut(s)	14, 725, 849
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	295, 500
MalI	GATC	6 cut(s)	120, 149, 204, 475, 886, 1025
MboI	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
MboII	GAAGA	4 cut(s)	123, 320, 697, 1006
MfeI	CAATTG	2 cut(s)	248, 340
MflI	RGATCY	2 cut(s)	884, 1023
MhlI	GDGCHC	1 cut(s)	987
MlsI	TGGCCA	1 cut(s)	480
MluCI	AATT	7 cut(s)	248, 340, 366, 424, 587, 714, 765
MluNI	TGGCCA	1 cut(s)	480
MlyI	GAGTC	2 cut(s)	162, 667
MmeI	TCCRAC	3 cut(s)	204, 252, 768
Mox20I	TGGCCA	1 cut(s)	480
MscI	TGGCCA	1 cut(s)	480
MslI	CAYNNNNRTG	2 cut(s)	836, 924
Msp20I	TGGCCA	1 cut(s)	480
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	110, 755
MunI	CAATTG	2 cut(s)	248, 340
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	110, 755
MvnI	CGCG	1 cut(s)	273
MwoI	GCNNNNNNNGC	7 cut(s)	23, 230, 239, 455, 464, 737, 964
NdeI	CATATG	1 cut(s)	322
NdeII	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	21, 964
NmeAIII	GCCGAG	2 cut(s)	117, 962
NmuCI	GTSAC	2 cut(s)	295, 500
PceI	AGGCCT	1 cut(s)	753
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	3 cut(s)	491, 814, 946
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	6 cut(s)	25, 96, 235, 319, 723, 966
PleI	GAGTC	2 cut(s)	162, 666
PpsI	GAGTC	2 cut(s)	162, 666
Psp6I	CCWGG	2 cut(s)	108, 753
PspEI	GGTNACC	1 cut(s)	500
PspFI	CCCAGC	1 cut(s)	189
PspGI	CCWGG	2 cut(s)	108, 753
PsuI	RGATCY	2 cut(s)	884, 1023
RseI	CAYNNNNRTG	2 cut(s)	836, 924
SatI	GCNGC	6 cut(s)	24, 95, 234, 318, 722, 965
Sau3AI	GATC	6 cut(s)	118, 147, 202, 473, 884, 1023
SchI	GAGTC	2 cut(s)	162, 667
ScrFI	CCNGG	2 cut(s)	110, 755
SduI	GDGCHC	1 cut(s)	987
SfaNI	GCATC	3 cut(s)	137, 454, 881
SmiMI	CAYNNNNRTG	2 cut(s)	836, 924
Sse9I	AATT	7 cut(s)	248, 340, 366, 424, 587, 714, 765
SseBI	AGGCCT	1 cut(s)	753
SsiI	CCGC	6 cut(s)	5, 48, 234, 271, 377, 456
SspMI	CTAG	3 cut(s)	14, 725, 849
StuI	AGGCCT	1 cut(s)	753
StyD4I	CCNGG	2 cut(s)	108, 753
TaaI	ACNGT	2 cut(s)	285, 517
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	2 cut(s)	146, 472
TasI	AATT	7 cut(s)	248, 340, 366, 424, 587, 714, 765
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	3 cut(s)	491, 814, 946
TscAI	CASTG	3 cut(s)	81, 502, 678
TseFI	GTSAC	2 cut(s)	295, 500
TseI	GCWGC	5 cut(s)	23, 94, 317, 721, 964
Tsp45I	GTSAC	2 cut(s)	295, 500
TspDTI	ATGAA	8 cut(s)	339, 504, 600, 758, 777, 854, 882, 1006
TspGWI	ACGGA	1 cut(s)	797
TspRI	CASTG	3 cut(s)	81, 502, 678
XapI	RAATTY	3 cut(s)	366, 424, 765
XspI	CTAG	3 cut(s)	14, 725, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.