Rh7BG194800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003438
Physical Location & Seq
Reverse (-)
15854673 .. 15875116
20444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG194800.1

Sequence Viewer

Length: 450 bp
ATGAAATTCGACAGGAAAAGATGGAGAGACAAGACGAATTTGGCCAAGCCCAGTCATATATCAAGGAATGCCACTTCCGATTTGAACATGCAAGTTCTTGTTTGTACTTGTGGACAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCATATGAAAAGGCTATATCAAACTGTGAAAGTAAAATACAGGAGAAGATTGAGGAAGCGGAGTTACTTAGGAGGAAGTTAGAGGAATTGGAGGACACTGAAAAGAATTTGAGAGATGAGCTGGAAAATGCACAAACAACATTGGATACCAGTCGATCTCGCGGATCAGATGAAGCTGTTGGCAACTCCAAAACATCAGTTGAAACTGGAGATGACATGGAATCATCAAAGAAAGCTATACTAGACAAGTTAGAGGAGAGGAAAAGAGAATTGGTTCATTGCTCTTTCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.14

Weight (kDa)

5.27

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 318
AciI CCGC 2 cut(s) 215, 318
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 3 cut(s) 5, 37, 262
AfaI GTAC 1 cut(s) 106
AgsI TTSAA 2 cut(s) 85, 359
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 3 cut(s) 277, 332, 392
AluI AGCT 3 cut(s) 277, 332, 392
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 328
AoxI GGCC 2 cut(s) 42, 117
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 5, 37, 262
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 118
AsuHPI GGTGA 1 cut(s) 145
BalI TGGCCA 1 cut(s) 44
BarI GAAGNNNNNNTAC 2 cut(s) 204, 236
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 15
BciVI GTATCC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 21
BfaI CTAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 295
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 118
BmrI ACTGGG 2 cut(s) 45, 115
BmuI ACTGGG 2 cut(s) 45, 115
BpmI CTGGAG 1 cut(s) 384
Bse1I ACTGG 4 cut(s) 51, 121, 306, 367
Bse3DI GCAATG 2 cut(s) 137, 433
BseMI GCAATG 2 cut(s) 137, 433
BseNI ACTGG 4 cut(s) 51, 121, 306, 367
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 318
BshFI GGCC 2 cut(s) 44, 119
BsmAI GTCTC 1 cut(s) 21
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 2 cut(s) 44, 119
Bsp143I GATC 2 cut(s) 311, 320
BspACI CCGC 2 cut(s) 215, 318
BspANI GGCC 2 cut(s) 44, 119
BspFNI CGCG 1 cut(s) 318
BspPI GGATC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 137, 433
BsrI ACTGG 4 cut(s) 51, 121, 306, 367
BssMI GATC 2 cut(s) 311, 320
Bst4CI ACNGT 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 224
BstFNI CGCG 1 cut(s) 318
BstKTI GATC 2 cut(s) 314, 323
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 2 cut(s) 311, 320
BstNSI RCATGY 1 cut(s) 91
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 142
BsuI GTATCC 1 cut(s) 295
BsuRI GGCC 2 cut(s) 44, 119
BtsIMutI CAGTG 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 105
CviAII CATG 2 cut(s) 88, 373
CviJI RGCY 7 cut(s) 44, 49, 119, 170, 277, 332, 392
CviKI_1 RGCY 7 cut(s) 44, 49, 119, 170, 277, 332, 392
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 224
DpnI GATC 2 cut(s) 313, 322
DpnII GATC 2 cut(s) 311, 320
EaeI YGGCCR 1 cut(s) 42
FaeI CATG 2 cut(s) 91, 376
FaiI YATR 8 cut(s) 57, 59, 89, 160, 162, 173, 374, 395
FatI CATG 2 cut(s) 87, 372
FauNDI CATATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 398
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 2 cut(s) 44, 119
Hin1II CATG 2 cut(s) 91, 376
HinfI GANTC 1 cut(s) 377
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 79, 325
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 4 cut(s) 91, 142, 158, 287
HpyF3I CTNAG 1 cut(s) 224
Hsp92II CATG 2 cut(s) 91, 376
Kzo9I GATC 2 cut(s) 311, 320
LpnPI CCDG 8 cut(s) 64, 101, 128, 134, 182, 263, 319, 348
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 133, 219
MalI GATC 2 cut(s) 313, 322
MboI GATC 2 cut(s) 311, 320
MboII GAAGA 1 cut(s) 214
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 5 cut(s) 5, 37, 242, 262, 425
MluNI TGGCCA 1 cut(s) 44
MnlI CCTC 8 cut(s) 124, 139, 202, 222, 232, 241, 403, 408
Mox20I TGGCCA 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 429
MscI TGGCCA 1 cut(s) 44
Msp20I TGGCCA 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 73
MvnI CGCG 1 cut(s) 318
NdeI CATATG 1 cut(s) 160
NdeII GATC 2 cut(s) 311, 320
NlaIII CATG 2 cut(s) 91, 376
NmuCI GTSAC 1 cut(s) 133
NspI RCATGY 1 cut(s) 91
PctI GAATGC 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 2 cut(s) 311, 320
Sau96I GGNCC 1 cut(s) 118
SetI ASST 4 cut(s) 135, 279, 334, 394
Sse9I AATT 5 cut(s) 5, 37, 242, 262, 425
SsiI CCGC 2 cut(s) 215, 318
SspMI CTAG 1 cut(s) 398
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 2 cut(s) 9, 310
TasI AATT 5 cut(s) 5, 37, 242, 262, 425
TatI WGTACW 1 cut(s) 104
TfiI GAWTC 1 cut(s) 377
TscAI CASTG 1 cut(s) 259
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 4 cut(s) 17, 177, 342, 422
TspRI CASTG 1 cut(s) 259
XapI RAATTY 3 cut(s) 5, 37, 262
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.