Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

63588219 .. 63598233

Gene Structure 10015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0504200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1626 bp

ATGGAAAACCAACCGGGCGAGAGCGTCGCCGTAAGCCTTCCATCCTCACCAGTGTACCGTTTGGAGAGGTCAGCAGCTACAGCTTCAATGAGAAAATTGTGGTCAACAGTTACTTATGTAATTAATCAACTATGGTCAACCGTTATTTATCCATTTGGACAATTATGCTGGAAACTGATATCTCTTTCCAGTGGGGAAATATATGATTATATTGTCGACGAGTACTACTGTTCTCTAAGCGTCATGATACGCTACATTTTACTTTGGACTCTATATATAATTCTTTTACCCATCACTTTAACATGGAAACTGCTAACAAGGAAGCCGATTCTGACTGGCAATCAGATATTTGCAATATCATGTATTGCAGTGTCGTTGGATCCTTTCTTCTTTTATATTCCAATCATCAATCAGGAAAACAAGTGTCTTGGAGTTGACAAAAAACTGAGGAATACACTTCTTGTGTTGCGATCACTCACGGATTTTGCTAGTGTATTGCATATTGTATCTCAAGTTCGGGATTGGACCATCGACCCAAACCCCGACTACCACACCGACACCGATTCCTACTTTGACTCTGAACTCAGGCCGACAACATCTCGGTTGCAAAAACTGATGAAGTCCATAGTAGAGGCAATAAATGGGAGGATGCCTTGGTTATCTCTCTCTCTCCTGATTGATTTTCTTGCTCTTCTTCCAATTCCGCAGGTGGCAATAGTAGTTGTCTTCTTCAAAATGGGGAGCTCTAAATTTTTCCTTCAAAGAACGATTCTCAATGTCCTTCTAATATTTCAATACATCCCCAGGATTTGTCAAATCTACCTATCAAGCAAGAAACTAGAAAGGATTGGAATATGGGTTAAAGGTGCATTCAACTTTTTTCTTTACATCCTCGCTGGGCATGTACTTGCATCTTTTTGGTACTTTTTCTCCATTCAACGAGAGACATCATGTTGGCACCAAACTTGTAGAGATGTTGTTGGATGCATATCTACTTATGAATGCAGTGACAGTACTCCAAAAAATATATCACTTCTAAATGAATTGTGCCCTATAAGTTCACCGAATGCTGCCGTATTTGATTTTGGAATATACCTTGATGTCCTTCAATCTGGTAACACAGGATCAATAGATTTTCCCAGGAAGTTCTTTTACTCTCTCTGGTGGGGCATTAGAAATTTAAGTAATTTTGGCACAAATCTCGAAACAAGTAATTATGTCTGGGAGAACTGTTTTGCAATTCTTATTGGTCTAATTGGCTTGCTTCTATTTTTGTATCTCATTGGAAATGTGCAGACATATATACAGTTGGCCACTACAAAGTCAGTGAAGAGTGAAGAGAAAGCTGAGGAATTAAGACGATCAAGAATTAATGAGAAGTATCGAGAAATGAAAATGTGGATGTCAAGTAATGGTCTTCCCAAGGATTTAAAGATAGCAATTAAAGAATATATTAAAAAATCTAACCTAGCAGAGAAATACATAGATGCTCCAGTGGGTCTGAAAATTCTATACGATTTTGCTAGAGAGGATAGAAGAGATGATATTGCAACTTTGATGGTCGATTATTCAATCATGAATGCGCCACTAAAAGTATGTTTCTTAACCCAATCTCTTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

541

Amino Acids

62.3

Weight (kDa)

8.64

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	697
AccB1I	GGYRCC	1 cut(s)	957
AccI	GTMKAC	1 cut(s)	216
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	374, 387, 1132
AcoI	YGGCCR	1 cut(s)	1311
AcsI	RAATTY	3 cut(s)	749, 1177, 1506
AfaI	GTAC	5 cut(s)	56, 224, 906, 923, 1015
AgsI	TTSAA	9 cut(s)	87, 733, 761, 794, 874, 938, 1109, 1572, 1620
AjnI	CCWGG	2 cut(s)	803, 1139
AluBI	AGCT	4 cut(s)	77, 83, 744, 1346
AluI	AGCT	4 cut(s)	77, 83, 744, 1346
Alw21I	GWGCWC	1 cut(s)	746
Alw26I	GTCTC	1 cut(s)	938
AlwI	GGATC	3 cut(s)	374, 387, 1132
AoxI	GGCC	2 cut(s)	587, 1311
ApeKI	GCWGC	2 cut(s)	74, 1070
ApoI	RAATTY	3 cut(s)	749, 1177, 1506
AseI	ATTAAT	2 cut(s)	123, 1371
AspLEI	GCGC	1 cut(s)	1585
AspS9I	GGNCC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	39, 1053
AvaII	GGWCC	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	1052
BaeI	ACNNNNGTAYC	2 cut(s)	38, 71
BalI	TGGCCA	1 cut(s)	1313
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	957
BanII	GRGCYC	1 cut(s)	746
BarI	GAAGNNNNNNTAC	2 cut(s)	1136, 1168
BbsI	GAAGAC	2 cut(s)	718, 1409
Bbv12I	GWGCWC	1 cut(s)	746
BbvCI	CCTCAGC	1 cut(s)	1347
BbvI	GCAGC	2 cut(s)	86, 1057
BccI	CCATC	4 cut(s)	49, 299, 536, 1552
BceAI	ACGGC	2 cut(s)	14, 1058
BcgI	CGANNNNNNTGC	2 cut(s)	1183, 1217
BciT130I	CCWGG	2 cut(s)	805, 1141
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	938
BfaI	CTAG	4 cut(s)	489, 839, 1469, 1524
BfmI	CTRYAG	1 cut(s)	78
BfuAI	ACCTGC	1 cut(s)	697
BisI	GCNGC	2 cut(s)	75, 1071
BlsI	GCNGC	2 cut(s)	76, 1072
BmcAI	AGTACT	2 cut(s)	224, 1015
Bme1390I	CCNGG	3 cut(s)	15, 805, 1141
Bme18I	GGWCC	1 cut(s)	525
BmgT120I	GGNCC	1 cut(s)	525
BmiI	GGNNCC	2 cut(s)	381, 959
BmrFI	CCNGG	3 cut(s)	15, 805, 1141
BmsI	GCATC	4 cut(s)	639, 920, 974, 1477
BpiI	GAAGAC	2 cut(s)	718, 1409
BpmI	CTGGAG	1 cut(s)	1476
Bpu10I	CCTNAGC	1 cut(s)	1347
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	988
BsaJI	CCNNGG	4 cut(s)	653, 803, 1139, 1422
BsaXI	ACNNNNNCTCC	2 cut(s)	914, 944
Bse1I	ACTGG	4 cut(s)	50, 189, 340, 1493
Bse8I	GATNNNNATC	1 cut(s)	988
BseBI	CCWGG	2 cut(s)	805, 1141
BseDI	CCNNGG	4 cut(s)	653, 803, 1139, 1422
BseGI	GGATG	6 cut(s)	41, 654, 798, 888, 989, 1407
BseJI	GATNNNNATC	1 cut(s)	988
BseMII	CTCAG	3 cut(s)	437, 598, 1338
BseNI	ACTGG	4 cut(s)	50, 189, 340, 1493
BseSI	GKGCMC	1 cut(s)	1052
BseXI	GCAGC	2 cut(s)	86, 1057
BseYI	CCCAGC	1 cut(s)	896
BsgI	GTGCAG	1 cut(s)	1313
BshFI	GGCC	2 cut(s)	589, 1313
BshNI	GGYRCC	1 cut(s)	957
BsiHKAI	GWGCWC	1 cut(s)	746
BsiSI	CCGG	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	938
BsmI	GAATGC	4 cut(s)	869, 1007, 1072, 1585
BsnI	GGCC	2 cut(s)	589, 1313
Bsp1286I	GDGCHC	2 cut(s)	746, 1052
Bsp143I	GATC	4 cut(s)	379, 470, 1124, 1361
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	2 cut(s)	589, 1313
BspCNI	CTCAG	3 cut(s)	438, 597, 1339
BspHI	TCATGA	2 cut(s)	243, 1575
BspLI	GGNNCC	2 cut(s)	381, 959
BspMI	ACCTGC	1 cut(s)	697
BspPI	GGATC	3 cut(s)	374, 387, 1132
BspQI	GCTCTTC	1 cut(s)	696
BspT107I	GGYRCC	1 cut(s)	957
BsrI	ACTGG	4 cut(s)	50, 189, 340, 1493
BssECI	CCNNGG	4 cut(s)	653, 803, 1139, 1422
BssMI	GATC	4 cut(s)	379, 470, 1124, 1361
BssT1I	CCWWGG	2 cut(s)	653, 1422
Bst2UI	CCWGG	2 cut(s)	805, 1141
Bst4CI	ACNGT	7 cut(s)	59, 109, 142, 230, 1013, 1232, 1308
Bst6I	CTCTTC	4 cut(s)	696, 1325, 1332, 1531
BstC8I	GCNNGC	1 cut(s)	1262
BstDEI	CTNAG	4 cut(s)	236, 446, 584, 1347
BstF5I	GGATG	6 cut(s)	41, 654, 798, 888, 989, 1407
BstHHI	GCGC	1 cut(s)	1585
BstKTI	GATC	4 cut(s)	382, 473, 1127, 1364
BstMAI	GTCTC	1 cut(s)	938
BstMBI	GATC	4 cut(s)	379, 470, 1124, 1361
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	805, 1141
BstNSI	RCATGY	1 cut(s)	905
BstSCI	CCNGG	3 cut(s)	13, 803, 1139
BstSFI	CTRYAG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	1052
BstV1I	GCAGC	2 cut(s)	86, 1057
BstV2I	GAAGAC	2 cut(s)	718, 1409
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	589, 1313
BtsCI	GGATG	6 cut(s)	41, 654, 798, 888, 989, 1407
BtsI	GCAGTG	2 cut(s)	375, 1012
BtsIMutI	CAGTG	6 cut(s)	57, 196, 375, 1012, 1332, 1500
BveI	ACCTGC	1 cut(s)	697
Cac8I	GCNNGC	1 cut(s)	1262
CciI	TCATGA	2 cut(s)	243, 1575
CfoI	GCGC	1 cut(s)	1585
Cfr13I	GGNCC	1 cut(s)	525
CseI	GACGC	2 cut(s)	13, 229
Csp6I	GTAC	5 cut(s)	55, 223, 905, 922, 1014
CviAII	CATG	6 cut(s)	244, 303, 360, 902, 951, 1576
CviJI	RGCY	9 cut(s)	36, 77, 83, 325, 589, 744, 1260, 1313, 1346
CviKI_1	RGCY	9 cut(s)	36, 77, 83, 325, 589, 744, 1260, 1313, 1346
CviQI	GTAC	5 cut(s)	55, 223, 905, 922, 1014
DdeI	CTNAG	4 cut(s)	236, 446, 584, 1347
DpnI	GATC	4 cut(s)	381, 472, 1126, 1363
DpnII	GATC	4 cut(s)	379, 470, 1124, 1361
DraI	TTTAAA	1 cut(s)	1431
EaeI	YGGCCR	1 cut(s)	1311
Eam1104I	CTCTTC	4 cut(s)	696, 1325, 1332, 1531
EarI	CTCTTC	4 cut(s)	696, 1325, 1332, 1531
Ecl136II	GAGCTC	1 cut(s)	744
Eco130I	CCWWGG	2 cut(s)	653, 1422
Eco24I	GRGCYC	1 cut(s)	746
Eco32I	GATATC	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	525
Eco53kI	GAGCTC	1 cut(s)	744
EcoICRI	GAGCTC	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	803, 1139
EcoRV	GATATC	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	653, 1422
EcoT22I	ATGCAT	1 cut(s)	989
EcoT38I	GRGCYC	1 cut(s)	746
ErhI	CCWWGG	2 cut(s)	653, 1422
FaeI	CATG	6 cut(s)	247, 306, 363, 905, 954, 1579
FatI	CATG	6 cut(s)	243, 302, 359, 901, 950, 1575
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	2 cut(s)	75, 1071
FokI	GGATG	6 cut(s)	28, 661, 785, 875, 996, 1414
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	2 cut(s)	75, 1071
FspBI	CTAG	4 cut(s)	489, 839, 1469, 1524
GlaI	GCGC	1 cut(s)	1584
GluI	GCNGC	2 cut(s)	75, 1071
GsaI	CCCAGC	1 cut(s)	900
GsuI	CTGGAG	1 cut(s)	1476
HaeIII	GGCC	2 cut(s)	589, 1313
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	2 cut(s)	13, 229
HhaI	GCGC	1 cut(s)	1585
Hin1II	CATG	6 cut(s)	247, 306, 363, 905, 954, 1579
Hin6I	GCGC	1 cut(s)	1583
HinP1I	GCGC	1 cut(s)	1583
HincII	GTYRAC	4 cut(s)	105, 138, 217, 436
HindII	GTYRAC	4 cut(s)	105, 138, 217, 436
HinfI	GANTC	5 cut(s)	268, 328, 563, 575, 769
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	2 cut(s)	39, 1053
Hpy166II	GTNNAC	6 cut(s)	55, 105, 138, 217, 436, 1061
Hpy188I	TCNGA	4 cut(s)	333, 345, 580, 1503
Hpy188III	TCNNGA	8 cut(s)	244, 413, 518, 673, 1202, 1365, 1385, 1576
Hpy8I	GTNNAC	6 cut(s)	55, 105, 138, 217, 436, 1061
Hpy99I	CGWCG	2 cut(s)	29, 221
HpyAV	CCTTC	4 cut(s)	47, 767, 791, 1115
HpyCH4III	ACNGT	7 cut(s)	59, 109, 142, 230, 1013, 1232, 1308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	4 cut(s)	236, 446, 584, 1347
Hsp92II	CATG	6 cut(s)	247, 306, 363, 905, 954, 1579
HspAI	GCGC	1 cut(s)	1583
Kzo9I	GATC	4 cut(s)	379, 470, 1124, 1361
LguI	GCTCTTC	1 cut(s)	696
LmnI	GCTCC	2 cut(s)	741, 1495
Lsp1109I	GCAGC	2 cut(s)	86, 1057
LweI	GCATC	4 cut(s)	639, 920, 974, 1477
MaeI	CTAG	4 cut(s)	489, 839, 1469, 1524
MaeIII	GTNAC	3 cut(s)	109, 1007, 1115
MalI	GATC	4 cut(s)	381, 472, 1126, 1363
MboI	GATC	4 cut(s)	379, 470, 1124, 1361
MboII	GAAGA	9 cut(s)	379, 683, 686, 718, 721, 1342, 1349, 1409, 1548
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	746, 1052
MlsI	TGGCCA	1 cut(s)	1313
MluNI	TGGCCA	1 cut(s)	1313
MlyI	GAGTC	2 cut(s)	262, 569
MmeI	TCCRAC	2 cut(s)	357, 961
MnlI	CCTC	8 cut(s)	55, 60, 441, 625, 639, 902, 1342, 1522
Mox20I	TGGCCA	1 cut(s)	1313
Mph1103I	ATGCAT	1 cut(s)	989
MscI	TGGCCA	1 cut(s)	1313
Msp20I	TGGCCA	1 cut(s)	1313
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	15, 805, 1141
Mva1269I	GAATGC	4 cut(s)	869, 1007, 1072, 1585
MvaI	CCWGG	2 cut(s)	805, 1141
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	15
NdeII	GATC	4 cut(s)	379, 470, 1124, 1361
NlaIII	CATG	6 cut(s)	247, 306, 363, 905, 954, 1579
NlaIV	GGNNCC	2 cut(s)	381, 959
NmuCI	GTSAC	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	989
NspI	RCATGY	1 cut(s)	905
PagI	TCATGA	2 cut(s)	243, 1575
PaqCI	CACCTGC	1 cut(s)	697
PciSI	GCTCTTC	1 cut(s)	696
PctI	GAATGC	4 cut(s)	869, 1007, 1072, 1585
PfeI	GAWTC	3 cut(s)	328, 563, 769
PkrI	GCNGC	2 cut(s)	76, 1072
PleI	GAGTC	2 cut(s)	262, 569
PpsI	GAGTC	2 cut(s)	262, 569
PshBI	ATTAAT	2 cut(s)	123, 1371
Psp124BI	GAGCTC	1 cut(s)	746
Psp6I	CCWGG	2 cut(s)	803, 1139
PspFI	CCCAGC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	803, 1139
PspN4I	GGNNCC	2 cut(s)	381, 959
PspPI	GGNCC	1 cut(s)	525
PsrI	GAACNNNNNNTAC	2 cut(s)	498, 530
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	5 cut(s)	56, 224, 906, 923, 1015
RsaNI	GTAC	5 cut(s)	55, 223, 905, 922, 1014
SacI	GAGCTC	1 cut(s)	746
SalI	GTCGAC	1 cut(s)	215
SapI	GCTCTTC	1 cut(s)	696
SatI	GCNGC	2 cut(s)	75, 1071
Sau3AI	GATC	4 cut(s)	379, 470, 1124, 1361
Sau96I	GGNCC	1 cut(s)	525
ScaI	AGTACT	2 cut(s)	224, 1015
SchI	GAGTC	2 cut(s)	262, 569
ScrFI	CCNGG	3 cut(s)	15, 805, 1141
SduI	GDGCHC	2 cut(s)	746, 1052
SfaNI	GCATC	4 cut(s)	639, 920, 974, 1477
SfcI	CTRYAG	1 cut(s)	78
SinI	GGWCC	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
SsiI	CCGC	1 cut(s)	704
SspI	AATATT	1 cut(s)	789
SspMI	CTAG	4 cut(s)	489, 839, 1469, 1524
SstI	GAGCTC	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	13, 803, 1139
StyI	CCWWGG	2 cut(s)	653, 1422
TaaI	ACNGT	7 cut(s)	59, 109, 142, 230, 1013, 1232, 1308
TaqI	TCGA	5 cut(s)	216, 531, 1203, 1384, 1563
TatI	WGTACW	3 cut(s)	222, 904, 1013
TfiI	GAWTC	3 cut(s)	328, 563, 769
TscAI	CASTG	6 cut(s)	57, 196, 375, 1012, 1332, 1500
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	2 cut(s)	74, 1070
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	5 cut(s)	632, 1014, 1056, 1406, 1592
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	6 cut(s)	57, 196, 375, 1012, 1332, 1500
VpaK11BI	GGWCC	1 cut(s)	525
VspI	ATTAAT	2 cut(s)	123, 1371
XapI	RAATTY	3 cut(s)	749, 1177, 1506
XceI	RCATGY	1 cut(s)	905
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	4 cut(s)	489, 839, 1469, 1524
ZrmI	AGTACT	2 cut(s)	224, 1015
Zsp2I	ATGCAT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.