Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

79073694 .. 79074858

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGGATTGCTAGCATGGGCGGCGGACGTAGTCGGAGCCGGCGGCGGTCAAGGCGACGAAGACGACAATCCCAATTCAATCCCACTGATATTCACACCGGAGCAGCAAAAGTACGCCCTGGACTTGGATTCAAAAGCGGCTTCTCTCAGCCGTTTGATCCATGATCTACGGCTCAGAATCCCTCCGAGCGACATCTCCCAACGCCTTCCTCATCTCCACGCTCACTCCCTCGCTTCCAACGCCGCCTTAGCCCTCCAATTGAACGCCCATTCCTCCACCCGAGAACAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCTTATGAAAAGGCTATATCGAACTGTGAGAGTAAAATACAGGAGAAGATTGAGGAAGTGGAGTTACTTAGGAGGAAGTTAGAGGAAATGGAGGACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.78

Weight (kDa)

4.87

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	5, 23, 26, 45, 48, 140, 246
AclWI	GGATC	1 cut(s)	154
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	127, 289
AgsI	TTSAA	3 cut(s)	81, 135, 265
AjnI	CCWGG	1 cut(s)	120
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AlwI	GGATC	1 cut(s)	154
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	106, 329
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	118, 316
BceAI	ACGGC	2 cut(s)	138, 188
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	6 cut(s)	24, 46, 107, 141, 246, 330
BlsI	GCNGC	6 cut(s)	25, 47, 108, 142, 247, 331
Bme1390I	CCNGG	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 289
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	2 cut(s)	127, 289
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	2 cut(s)	163, 190
BseNI	ACTGG	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	118, 316
BshFI	GGCC	1 cut(s)	293
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	42, 101
BslI	CCNNNNNNNGG	2 cut(s)	127, 289
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	2 cut(s)	159, 166
BspACI	CCGC	7 cut(s)	5, 23, 26, 45, 48, 140, 246
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	162, 189
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	159, 166
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	15, 43
BstDEI	CTNAG	4 cut(s)	149, 176, 250, 398
BstKTI	GATC	2 cut(s)	162, 169
BstMBI	GATC	2 cut(s)	159, 166
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 54, 242, 251
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstV1I	GCAGC	2 cut(s)	118, 316
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	2 cut(s)	15, 43
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	18, 164
CviJI	RGCY	7 cut(s)	41, 143, 153, 175, 254, 293, 344
CviKI_1	RGCY	7 cut(s)	41, 143, 153, 175, 254, 293, 344
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	149, 176, 250, 398
DpnI	GATC	2 cut(s)	161, 168
DpnII	GATC	2 cut(s)	159, 166
EciI	GGCGGA	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	2 cut(s)	21, 167
FaiI	YATR	4 cut(s)	19, 165, 336, 347
FatI	CATG	2 cut(s)	17, 163
Fnu4HI	GCNGC	6 cut(s)	24, 46, 107, 141, 246, 330
Fsp4HI	GCNGC	6 cut(s)	24, 46, 107, 141, 246, 330
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	6 cut(s)	24, 46, 107, 141, 246, 330
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	42, 101
Hin1II	CATG	2 cut(s)	21, 167
HinfI	GANTC	2 cut(s)	131, 180
HpaII	CCGG	2 cut(s)	42, 101
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	38, 179, 189
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	218
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	316
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 54, 242, 251
HpyF3I	CTNAG	4 cut(s)	149, 176, 250, 398
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	2 cut(s)	21, 167
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	159, 166
LmnI	GCTCC	2 cut(s)	38, 103
LpnPI	CCDG	8 cut(s)	55, 107, 114, 134, 275, 302, 308, 356
Lsp1109I	GCAGC	2 cut(s)	118, 316
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	307, 393
MalI	GATC	2 cut(s)	161, 168
MboI	GATC	2 cut(s)	159, 166
MboII	GAAGA	2 cut(s)	74, 388
MfeI	CAATTG	1 cut(s)	260
MluCI	AATT	2 cut(s)	76, 260
MmeI	TCCRAC	2 cut(s)	16, 264
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	430
MspI	CCGG	2 cut(s)	42, 101
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	23, 54, 242, 251
NaeI	GCCGGC	1 cut(s)	43
NdeII	GATC	2 cut(s)	159, 166
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	21, 167
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	131, 180
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	6 cut(s)	25, 47, 108, 142, 247, 331
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	430
SatI	GCNGC	6 cut(s)	24, 46, 107, 141, 246, 330
Sau3AI	GATC	2 cut(s)	159, 166
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	2 cut(s)	33, 309
Sse9I	AATT	2 cut(s)	76, 260
SsiI	CCGC	7 cut(s)	5, 23, 26, 45, 48, 140, 246
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	76, 260
TauI	GCSGC	4 cut(s)	26, 48, 143, 248
TfiI	GAWTC	2 cut(s)	131, 180
Tru1I	TTAA	1 cut(s)	430
Tru9I	TTAA	1 cut(s)	430
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	106, 329
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	93
Tth111I	GACNNNGTC	1 cut(s)	32
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.