Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

23528777 .. 23531477

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G242300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTGGATTGCTAGCGTGGGCAGCAGACGTAGTAGGAGGTGGTGGCGGGCAAGGTAACGAAGAAGACGGTTCCAATTCGATCCCGCTTATATTCACTCCGGAGCAGCAAAAGTATGCTCTAGACTTGGATCACAAAGCAACTTCTCTCAGCCGTTCGATCCAAGATCTACGGCTCAGACTCCCTCCCTCTGACATCTCCCAACGGCTCCCTGATCTCCATGCCCACTCCGTCGCTTCTAATGCCGCTCTTGCTCTCCAATTGAATGCCCATTCCACTACCCGCGAACAGGCCCAGTTGAGAGAGGTGACATTGCAGGAAGAGAATGTTGCATATGAAAGGGCCATTTCAAATTGTGAAACTAAAATAATGGAGAAAATTCAAGAAGCAGATTTACTTAGAAGGAAGTTAATGGAAATGGAGGAAACTGAGAGGGATTTAAGAGTTAAGCTTGAAAATGCACAAACTGCATTGGATGTGAGTCGTTCTGGCGAATCACATGACTCCATTGGCGACTCAAAGATGACAATCGAAACTGAACTTGACATTGAAGCCTCAAAGAAAGCTATACTTGACAAGTTAGAGGAGAGGAAGAAAGAGTTGAGTTCAATGGAAGAAGTAGTAAAACATTTAGAGGGGAGATGGGCAGAAATTCAAGATAATGCACTCAGTCACCCTTCTCCAGTTCAAAGAGAGAAGATTTTGGATAAACAACTTCACAGTTTAATTGAGCAGCTTGCAGCAAAACAGGCACAAGCAGAAGGCCTGGTGAATGAAATTCATTTGAAAGAGACGGAGCTAGAAAGAGTGAATGGGTTGTGGAGAAAGCTTGAAAGCAGCAACATGGAGATGAATACTGCTAGAAACCGGTTTGGACGAAGCACATCTTTTAAAGGATCTGCTTCCTCTGATTATATTCTTGATGGTCATCATAGATATGCCGATGGCCGAACAGAGAGTCAGCAAAGGCTCATGCTGCTCAGGTCGGGTTTTGTGCTCTACATTTTAGCTTTGCACATCGTGGTCTTCATCAAGATCTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

39.17

Weight (kDa)

5.55

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	248
AccII	CGCG	1 cut(s)	285
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	4 cut(s)	48, 86, 246, 283
AclWI	GGATC	4 cut(s)	76, 138, 154, 904
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	3 cut(s)	378, 651, 777
AdeI	CACNNNGTG	1 cut(s)	1021
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgeI	ACCGGT	1 cut(s)	867
AjnI	CCWGG	1 cut(s)	765
AluBI	AGCT	6 cut(s)	451, 566, 736, 799, 829, 1010
AluI	AGCT	6 cut(s)	451, 566, 736, 799, 829, 1010
Alw21I	GWGCWC	1 cut(s)	999
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	4 cut(s)	76, 138, 154, 904
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	4 cut(s)	291, 342, 763, 946
ApeKI	GCWGC	6 cut(s)	23, 106, 733, 740, 837, 976
ApoI	RAATTY	3 cut(s)	378, 651, 777
ArsI	GACNNNNNNTTYG	2 cut(s)	943, 975
AsiGI	ACCGGT	1 cut(s)	867
AspS9I	GGNCC	2 cut(s)	292, 342
AsuHPI	GGTGA	3 cut(s)	319, 665, 781
AsuNHI	GCTAGC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	2 cut(s)	72, 1018
Bbv12I	GWGCWC	1 cut(s)	999
BbvI	GCAGC	6 cut(s)	35, 118, 745, 752, 849, 963
BccI	CCATC	3 cut(s)	636, 917, 938
BceAI	ACGGC	3 cut(s)	138, 188, 221
BciT130I	CCWGG	1 cut(s)	767
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	4 cut(s)	14, 122, 800, 861
BglII	AGATCT	2 cut(s)	166, 1035
BisI	GCNGC	7 cut(s)	24, 107, 246, 734, 741, 838, 977
BlsI	GCNGC	7 cut(s)	25, 108, 247, 735, 742, 839, 978
Bme1390I	CCNGG	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	292, 342
BmiI	GGNNCC	2 cut(s)	73, 209
BmrFI	CCNGG	1 cut(s)	767
BmrI	ACTGGG	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	72, 1018
BpmI	CTGGAG	1 cut(s)	666
Bpu10I	CCTNAGC	1 cut(s)	980
BsaBI	GATNNNNATC	2 cut(s)	527, 927
BsaWI	WCCGGW	2 cut(s)	100, 867
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	867
Bse1I	ACTGG	2 cut(s)	295, 683
Bse3DI	GCAATG	1 cut(s)	311
Bse8I	GATNNNNATC	2 cut(s)	527, 927
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	1 cut(s)	767
BseGI	GGATG	1 cut(s)	481
BseJI	GATNNNNATC	2 cut(s)	527, 927
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	5 cut(s)	163, 190, 420, 682, 994
BseNI	ACTGG	2 cut(s)	295, 683
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	6 cut(s)	35, 118, 745, 752, 849, 963
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	4 cut(s)	293, 344, 765, 948
BshTI	ACCGGT	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	999
BsiSI	CCGG	2 cut(s)	101, 868
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	785
BsmBI	CGTCTC	1 cut(s)	785
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	4 cut(s)	293, 344, 765, 948
Bsp1286I	GDGCHC	1 cut(s)	999
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
BspACI	CCGC	4 cut(s)	48, 86, 246, 283
BspANI	GGCC	4 cut(s)	293, 344, 765, 948
BspCNI	CTCAG	5 cut(s)	162, 189, 421, 681, 993
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	73, 209
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	4 cut(s)	76, 138, 154, 904
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	867
BsrI	ACTGG	2 cut(s)	295, 683
BssAI	RCCGGY	1 cut(s)	867
BssMI	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
Bst2UI	CCWGG	1 cut(s)	767
Bst4CI	ACNGT	2 cut(s)	71, 722
Bst6I	CTCTTC	1 cut(s)	315
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	15, 50, 738
BstDEI	CTNAG	6 cut(s)	149, 176, 398, 429, 668, 980
BstF5I	GGATG	1 cut(s)	481
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	7 cut(s)	84, 133, 162, 169, 217, 899, 1038
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 242, 251, 467, 749, 976
BstNI	CCWGG	1 cut(s)	767
BstSCI	CCNGG	1 cut(s)	765
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	35, 118, 745, 752, 849, 963
BstV2I	GAAGAC	2 cut(s)	72, 1018
BstX2I	RGATCY	3 cut(s)	166, 896, 1035
BstYI	RGATCY	3 cut(s)	166, 896, 1035
BsuRI	GGCC	4 cut(s)	293, 344, 765, 948
BtsCI	GGATG	1 cut(s)	481
Cac8I	GCNNGC	3 cut(s)	15, 50, 738
Cfr10I	RCCGGY	1 cut(s)	867
Cfr13I	GGNCC	2 cut(s)	292, 342
CspAI	ACCGGT	1 cut(s)	867
CviAII	CATG	4 cut(s)	221, 500, 844, 973
DdeI	CTNAG	6 cut(s)	149, 176, 398, 429, 668, 980
DpnI	GATC	7 cut(s)	83, 132, 161, 168, 216, 898, 1037
DpnII	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
DraI	TTTAAA	1 cut(s)	892
DraIII	CACNNNGTG	1 cut(s)	1021
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco147I	AGGCCT	1 cut(s)	765
EcoRII	CCWGG	1 cut(s)	765
Esp3I	CGTCTC	1 cut(s)	785
FaeI	CATG	4 cut(s)	224, 503, 847, 976
FalI	AAGNNNNNCTT	4 cut(s)	555, 587, 871, 903
FatI	CATG	4 cut(s)	220, 499, 843, 972
FauI	CCCGC	3 cut(s)	41, 93, 290
FauNDI	CATATG	1 cut(s)	334
Fnu4HI	GCNGC	7 cut(s)	24, 107, 246, 734, 741, 838, 977
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	7 cut(s)	24, 107, 246, 734, 741, 838, 977
FspBI	CTAG	4 cut(s)	14, 122, 800, 861
GluI	GCNGC	7 cut(s)	24, 107, 246, 734, 741, 838, 977
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	293, 344, 765, 948
HapII	CCGG	2 cut(s)	101, 868
Hin1II	CATG	4 cut(s)	224, 503, 847, 976
HindIII	AAGCTT	2 cut(s)	449, 827
HinfI	GANTC	6 cut(s)	180, 481, 494, 503, 515, 958
HpaII	CCGG	2 cut(s)	101, 868
HphI	GGTGA	3 cut(s)	319, 665, 781
Hpy188I	TCNGA	3 cut(s)	179, 193, 910
Hpy188III	TCNNGA	6 cut(s)	101, 122, 383, 656, 920, 1033
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	396, 687, 755
HpyCH4III	ACNGT	2 cut(s)	71, 722
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	7 cut(s)	316, 332, 461, 470, 665, 740, 1015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 242, 251, 467, 749, 976
HpyF3I	CTNAG	6 cut(s)	149, 176, 398, 429, 668, 980
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	224, 503, 847, 976
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
LmnI	GCTCC	3 cut(s)	103, 213, 796
Lsp1109I	GCAGC	6 cut(s)	35, 118, 745, 752, 849, 963
MaeI	CTAG	4 cut(s)	14, 122, 800, 861
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	56, 307, 671
MalI	GATC	7 cut(s)	83, 132, 161, 168, 216, 898, 1037
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
MboII	GAAGA	7 cut(s)	74, 77, 332, 604, 626, 709, 1018
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	3 cut(s)	166, 896, 1035
MhlI	GDGCHC	1 cut(s)	999
MluCI	AATT	7 cut(s)	76, 260, 352, 378, 651, 726, 777
MlyI	GAGTC	5 cut(s)	174, 490, 497, 509, 967
MroI	TCCGGA	1 cut(s)	100
MseI	TTAA	5 cut(s)	410, 440, 447, 725, 891
MslI	CAYNNNNRTG	2 cut(s)	848, 936
MspI	CCGG	2 cut(s)	101, 868
MspR9I	CCNGG	1 cut(s)	767
MunI	CAATTG	1 cut(s)	260
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	767
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	6 cut(s)	23, 242, 251, 467, 749, 976
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	224, 503, 847, 976
NlaIV	GGNNCC	2 cut(s)	73, 209
NmuCI	GTSAC	2 cut(s)	307, 671
PceI	AGGCCT	1 cut(s)	765
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	494
PinAI	ACCGGT	1 cut(s)	867
PkrI	GCNGC	7 cut(s)	25, 108, 247, 735, 742, 839, 978
PleI	GAGTC	5 cut(s)	174, 489, 497, 509, 966
PpsI	GAGTC	5 cut(s)	174, 489, 497, 509, 966
Psp6I	CCWGG	1 cut(s)	765
PspGI	CCWGG	1 cut(s)	765
PspN4I	GGNNCC	2 cut(s)	73, 209
PspPI	GGNCC	2 cut(s)	292, 342
PsuI	RGATCY	3 cut(s)	166, 896, 1035
RseI	CAYNNNNRTG	2 cut(s)	848, 936
SaqAI	TTAA	5 cut(s)	410, 440, 447, 725, 891
SatI	GCNGC	7 cut(s)	24, 107, 246, 734, 741, 838, 977
Sau3AI	GATC	7 cut(s)	81, 130, 159, 166, 214, 896, 1035
Sau96I	GGNCC	2 cut(s)	292, 342
SchI	GAGTC	5 cut(s)	174, 490, 497, 509, 967
ScrFI	CCNGG	1 cut(s)	767
SduI	GDGCHC	1 cut(s)	999
SmiMI	CAYNNNNRTG	2 cut(s)	848, 936
Sse9I	AATT	7 cut(s)	76, 260, 352, 378, 651, 726, 777
SseBI	AGGCCT	1 cut(s)	765
SsiI	CCGC	4 cut(s)	48, 86, 246, 283
SspMI	CTAG	4 cut(s)	14, 122, 800, 861
StuI	AGGCCT	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	765
TaaI	ACNGT	2 cut(s)	71, 722
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	80, 158, 531
TasI	AATT	7 cut(s)	76, 260, 352, 378, 651, 726, 777
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	5 cut(s)	410, 440, 447, 725, 891
Tru9I	TTAA	5 cut(s)	410, 440, 447, 725, 891
TseFI	GTSAC	2 cut(s)	307, 671
TseI	GCWGC	6 cut(s)	23, 106, 733, 740, 837, 976
Tsp45I	GTSAC	2 cut(s)	307, 671
TspDTI	ATGAA	5 cut(s)	351, 770, 789, 866, 1018
TspGWI	ACGGA	2 cut(s)	220, 809
XapI	RAATTY	3 cut(s)	378, 651, 777
XbaI	TCTAGA	1 cut(s)	121
XspI	CTAG	4 cut(s)	14, 122, 800, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.