Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004918.1

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

6300 .. 8649

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004918.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atggcgggattgctagcatgggcggcggacgtagtcggagccggcggcggtcaaggcgacgaagacgacaatcccaattcaatcccactgatattcacaccggagcagcaaaagtacgccctgggcttggattcaaaagcggcttctctcagccgtttgatccatgatctacggctcagaatccctccgagcgacatctcccaacggcttcctcacctccacgctcactccctcgcttccaacgccgcccttgccctccaattgaacgcccattcctccacccgagaacaggcccagttgagagaggtgacattgcaggaggaaaatgctgcttatgaaaaggctatatcgaactgtgagagtaaaatacaggagaagattgaggaagtggagttacttaggaggaagttagaggaaatggaggacactgaaaagaatttgatagatgagctgcaaaatgcacaaacagcattggataccagtcgatctcgcggatcagatgaagctgttggcaactccaaaacatcagttgaaactggagatgacatggaatcatcaaagaaagctatgctagacaagttagaggagaggaaaagagaattgagttcaaaggaagcagtagttcaagatttagagaaaaaatggggagaaattcaagataaagcattgagccggccttctccagctcaaagagagaagattctggataaacagtatcatagccttattgagcaactagaagcaaaacaggcacaagcagaaggcctagttggtgaaattcatttgaaagagatggagctagaaagattaaatggattgtggaggaagcttgaaagcagcaacaatgagatgagcgctgctagaaatcggtttggacgaagcacatctgaaagaggatctgcttcttctgacaatatccttgacgctcatcacaaatatgctggtggccgaacagagaatcagcagaggctcatgctgctcaggtcgatgtttgtgctttacattttagctttgcacatcttagtcttcatcaggatctcattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

348

Amino Acids

39.0

Weight (kDa)

5.52

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	492
AciI	CCGC	8 cut(s)	5, 23, 26, 45, 48, 140, 246, 492
AclWI	GGATC	4 cut(s)	154, 502, 904, 1043
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	3 cut(s)	436, 651, 777
AfaI	GTAC	1 cut(s)	116
AfeI	AGCGCT	1 cut(s)	856
AfiI	CCNNNNNNNGG	2 cut(s)	127, 289
AgsI	TTSAA	9 cut(s)	81, 135, 265, 533, 609, 626, 656, 787, 833
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	7 cut(s)	451, 506, 566, 686, 799, 829, 1010
AluI	AGCT	7 cut(s)	451, 506, 566, 686, 799, 829, 1010
AlwI	GGATC	4 cut(s)	154, 502, 904, 1043
Ama87I	CYCGRG	1 cut(s)	282
Aor51HI	AGCGCT	1 cut(s)	856
AoxI	GGCC	4 cut(s)	291, 674, 763, 946
ApeKI	GCWGC	6 cut(s)	106, 329, 451, 837, 857, 976
ApoI	RAATTY	3 cut(s)	436, 651, 777
AspLEI	GCGC	1 cut(s)	857
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	3 cut(s)	206, 319, 785
AsuNHI	GCTAGC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	2 cut(s)	69, 1018
BbvI	GCAGC	6 cut(s)	118, 316, 438, 844, 849, 963
BccI	CCATC	1 cut(s)	787
BceAI	ACGGC	3 cut(s)	138, 188, 221
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BciT130I	CCWGG	1 cut(s)	122
BciVI	GTATCC	1 cut(s)	469
BfaI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
BfoI	RGCGCY	1 cut(s)	858
BfuI	GTATCC	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	69, 1018
BpmI	CTGGAG	2 cut(s)	558, 666
Bpu10I	CCTNAGC	1 cut(s)	980
BsaJI	CCNNGG	2 cut(s)	120, 121
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 289
Bse118I	RCCGGY	2 cut(s)	41, 672
Bse1I	ACTGG	3 cut(s)	295, 480, 541
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	2 cut(s)	120, 121
BseLI	CCNNNNNNNGG	2 cut(s)	127, 289
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	3 cut(s)	163, 190, 994
BseNI	ACTGG	3 cut(s)	295, 480, 541
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	6 cut(s)	118, 316, 438, 844, 849, 963
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	4 cut(s)	293, 676, 765, 948
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	42, 101, 673
BslI	CCNNNNNNNGG	2 cut(s)	127, 289
BsnI	GGCC	4 cut(s)	293, 676, 765, 948
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
BspACI	CCGC	8 cut(s)	5, 23, 26, 45, 48, 140, 246, 492
BspANI	GGCC	4 cut(s)	293, 676, 765, 948
BspCNI	CTCAG	3 cut(s)	162, 189, 993
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	4 cut(s)	154, 502, 904, 1043
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	41, 672
BsrI	ACTGG	3 cut(s)	295, 480, 541
BssAI	RCCGGY	2 cut(s)	41, 672
BssECI	CCNNGG	2 cut(s)	120, 121
BssMI	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	356, 714
BstC8I	GCNNGC	3 cut(s)	15, 43, 674
BstDEI	CTNAG	5 cut(s)	149, 176, 398, 980, 1021
BstFNI	CGCG	1 cut(s)	492
BstH2I	RGCGCY	1 cut(s)	858
BstHHI	GCGC	1 cut(s)	857
BstKTI	GATC	6 cut(s)	162, 169, 488, 497, 899, 1038
BstMBI	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	6 cut(s)	118, 316, 438, 844, 849, 963
BstV2I	GAAGAC	2 cut(s)	69, 1018
BstX2I	RGATCY	2 cut(s)	896, 1035
BstYI	RGATCY	2 cut(s)	896, 1035
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	4 cut(s)	293, 676, 765, 948
BtsIMutI	CAGTG	2 cut(s)	86, 426
Cac8I	GCNNGC	3 cut(s)	15, 43, 674
CfoI	GCGC	1 cut(s)	857
Cfr10I	RCCGGY	2 cut(s)	41, 672
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	18, 164, 547, 973
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	5 cut(s)	149, 176, 398, 980, 1021
DpnI	GATC	6 cut(s)	161, 168, 487, 496, 898, 1037
DpnII	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
EaeI	YGGCCR	1 cut(s)	946
EciI	GGCGGA	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	765
Eco47III	AGCGCT	1 cut(s)	856
Eco88I	CYCGRG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	21, 167, 550, 976
FaiI	YATR	9 cut(s)	19, 165, 336, 347, 548, 569, 720, 939, 974
FatI	CATG	4 cut(s)	17, 163, 546, 972
FspBI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
GlaI	GCGC	1 cut(s)	856
GsuI	CTGGAG	2 cut(s)	558, 666
HaeII	RGCGCY	1 cut(s)	858
HaeIII	GGCC	4 cut(s)	293, 676, 765, 948
HapII	CCGG	3 cut(s)	42, 101, 673
HgaI	GACGC	1 cut(s)	932
HhaI	GCGC	1 cut(s)	857
Hin1II	CATG	4 cut(s)	21, 167, 550, 976
Hin6I	GCGC	1 cut(s)	855
HinP1I	GCGC	1 cut(s)	855
HindIII	AAGCTT	1 cut(s)	827
HinfI	GANTC	5 cut(s)	131, 180, 551, 700, 958
HpaII	CCGG	3 cut(s)	42, 101, 673
HphI	GGTGA	3 cut(s)	206, 319, 785
Hpy188I	TCNGA	6 cut(s)	38, 179, 189, 499, 889, 910
Hpy188III	TCNNGA	4 cut(s)	626, 656, 704, 1033
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	687, 755
HpyCH4III	ACNGT	2 cut(s)	356, 714
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	4 cut(s)	316, 454, 461, 1015
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
HpyF3I	CTNAG	5 cut(s)	149, 176, 398, 980, 1021
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	4 cut(s)	21, 167, 550, 976
HspAI	GCGC	1 cut(s)	855
KroI	GCCGGC	2 cut(s)	41, 672
KroNI	GCCGGC	2 cut(s)	43, 674
Kzo9I	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
LmnI	GCTCC	3 cut(s)	38, 103, 796
Lsp1109I	GCAGC	6 cut(s)	118, 316, 438, 844, 849, 963
MaeI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	307, 393
MalI	GATC	6 cut(s)	161, 168, 487, 496, 898, 1037
MboI	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
MboII	GAAGA	5 cut(s)	74, 388, 709, 897, 1018
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	896, 1035
MluCI	AATT	6 cut(s)	76, 260, 436, 599, 651, 777
MmeI	TCCRAC	2 cut(s)	16, 264
MroNI	GCCGGC	2 cut(s)	41, 672
MseI	TTAA	1 cut(s)	809
MslI	CAYNNNNRTG	1 cut(s)	936
MspI	CCGG	3 cut(s)	42, 101, 673
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
NaeI	GCCGGC	2 cut(s)	43, 674
NdeII	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
NgoMIV	GCCGGC	2 cut(s)	41, 672
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	4 cut(s)	21, 167, 550, 976
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	307
PasI	CCCWGGG	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	874
PdiI	GCCGGC	2 cut(s)	43, 674
PfeI	GAWTC	5 cut(s)	131, 180, 551, 700, 958
PflFI	GACNNNGTC	1 cut(s)	32
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	896, 1035
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	1 cut(s)	809
Sau3AI	GATC	6 cut(s)	159, 166, 485, 494, 896, 1035
Sau96I	GGNCC	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	936
Sse9I	AATT	6 cut(s)	76, 260, 436, 599, 651, 777
SseBI	AGGCCT	1 cut(s)	765
SsiI	CCGC	8 cut(s)	5, 23, 26, 45, 48, 140, 246, 492
SspMI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
StuI	AGGCCT	1 cut(s)	765
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	356, 714
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	350, 484, 986
TasI	AATT	6 cut(s)	76, 260, 436, 599, 651, 777
TauI	GCSGC	4 cut(s)	26, 48, 143, 248
TfiI	GAWTC	5 cut(s)	131, 180, 551, 700, 958
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	2 cut(s)	93, 433
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	6 cut(s)	106, 329, 451, 837, 857, 976
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	351, 516, 770, 1018
TspRI	CASTG	2 cut(s)	93, 433
Tth111I	GACNNNGTC	1 cut(s)	32
XapI	RAATTY	3 cut(s)	436, 651, 777
XspI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.