Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

63604397 .. 63604750

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0504400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGTGAATGTTGTGATCTTGGTCCTTGTTATAGCATTGGCAGTGGTAATGTTACGTGGAACAGAAGCTGAAAAATACAGAGTTGGAGGCAACTTGGGTTGGACTATCCCTCCCGGCGGCGCTGCCACTTATGCTTCATGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTATAGCATTGGCAGCAGCAATGTTAGGTGCAACAGAAGCTAGAAAGTATAGAGTCGGAGGCGACTTGGGTTGGACTATCCCTCCCAGCGGTGCTGCCACTTATGCTTCATGGGCTTCAAAGTACACCTTCAAAGTTGACAAGGATCTTCTAGGTACACTAGTACACAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.52

Weight (kDa)

9.56

Isoelectric Point (pI)

9.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 267
AclWI	GGATC	2 cut(s)	183, 330
AfaI	GTAC	4 cut(s)	155, 302, 334, 342
AfiI	CCNNNNNNNGG	2 cut(s)	119, 266
AgsI	TTSAA	4 cut(s)	150, 163, 297, 310
AhlI	ACTAGT	1 cut(s)	337
AluBI	AGCT	2 cut(s)	71, 218
AluI	AGCT	2 cut(s)	71, 218
AlwI	GGATC	2 cut(s)	183, 330
AlwNI	CAGNNNCTG	1 cut(s)	71
ApeKI	GCWGC	4 cut(s)	125, 191, 194, 272
AspLEI	GCGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	25
BaeI	ACNNNNGTAYC	1 cut(s)	324
BbvI	GCAGC	4 cut(s)	112, 203, 206, 259
BcnI	CCSGG	1 cut(s)	117
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	3 cut(s)	219, 329, 338
BfoI	RGCGCY	1 cut(s)	126
BisI	GCNGC	5 cut(s)	121, 126, 192, 195, 273
BlsI	GCNGC	5 cut(s)	122, 127, 193, 196, 274
Bme1390I	CCNGG	1 cut(s)	117
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	59
BsaXI	ACNNNNNCTCC	4 cut(s)	97, 127, 244, 274
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 266
Bse3DI	GCAATG	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	119, 266
BseMI	GCAATG	1 cut(s)	204
BseXI	GCAGC	4 cut(s)	112, 203, 206, 259
BseYI	CCCAGC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	119, 266
Bsp143I	GATC	3 cut(s)	18, 175, 322
BspACI	CCGC	2 cut(s)	120, 267
BspPI	GGATC	2 cut(s)	183, 330
BsrDI	GCAATG	1 cut(s)	204
BssMI	GATC	3 cut(s)	18, 175, 322
BstBAI	YACGTR	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	3 cut(s)	21, 178, 325
BstMBI	GATC	3 cut(s)	18, 175, 322
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 143, 191, 215, 281, 290
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	4 cut(s)	112, 203, 206, 259
BstX2I	RGATCY	2 cut(s)	175, 322
BstYI	RGATCY	2 cut(s)	175, 322
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	154, 301, 333, 341
CviAII	CATG	2 cut(s)	141, 288
CviJI	RGCY	4 cut(s)	71, 146, 218, 293
CviKI_1	RGCY	4 cut(s)	71, 146, 218, 293
CviQI	GTAC	4 cut(s)	154, 301, 333, 341
DpnI	GATC	3 cut(s)	20, 177, 324
DpnII	GATC	3 cut(s)	18, 175, 322
Eco47I	GGWCC	1 cut(s)	25
FaeI	CATG	2 cut(s)	144, 291
FaiI	YATR	8 cut(s)	35, 135, 142, 182, 228, 282, 289, 350
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 290, 322
FatI	CATG	2 cut(s)	140, 287
Fnu4HI	GCNGC	5 cut(s)	121, 126, 192, 195, 273
Fsp4HI	GCNGC	5 cut(s)	121, 126, 192, 195, 273
FspBI	CTAG	3 cut(s)	219, 329, 338
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	5 cut(s)	121, 126, 192, 195, 273
GsaI	CCCAGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	126
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	144, 291
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	2 cut(s)	169, 316
HindII	GTYRAC	2 cut(s)	169, 316
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	6 cut(s)	156, 169, 303, 316, 335, 343
Hpy188I	TCNGA	1 cut(s)	236
Hpy8I	GTNNAC	6 cut(s)	156, 169, 303, 316, 335, 343
HpyAV	CCTTC	2 cut(s)	169, 316
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 143, 191, 215, 281, 290
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	144, 291
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	3 cut(s)	18, 175, 322
LpnPI	CCDG	2 cut(s)	130, 277
Lsp1109I	GCAGC	4 cut(s)	112, 203, 206, 259
MaeI	CTAG	3 cut(s)	219, 329, 338
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	54
MalI	GATC	3 cut(s)	20, 177, 324
MboI	GATC	3 cut(s)	18, 175, 322
MboII	GAAGA	1 cut(s)	317
MflI	RGATCY	2 cut(s)	175, 322
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	4 cut(s)	67, 83, 214, 230
MnlI	CCTC	4 cut(s)	83, 123, 230, 270
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	1 cut(s)	117
MwoI	GCNNNNNNNGC	6 cut(s)	134, 143, 191, 215, 281, 290
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	18, 175, 322
NlaIII	CATG	2 cut(s)	144, 291
PkrI	GCNGC	5 cut(s)	122, 127, 193, 196, 274
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	25
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	175, 322
RsaI	GTAC	4 cut(s)	155, 302, 334, 342
RsaNI	GTAC	4 cut(s)	154, 301, 333, 341
SatI	GCNGC	5 cut(s)	121, 126, 192, 195, 273
Sau3AI	GATC	3 cut(s)	18, 175, 322
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	117
SetI	ASST	8 cut(s)	9, 61, 73, 161, 208, 220, 308, 334
SinI	GGWCC	1 cut(s)	25
SpeI	ACTAGT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	120, 267
SspMI	CTAG	3 cut(s)	219, 329, 338
StyD4I	CCNGG	1 cut(s)	115
TaiI	ACGT	1 cut(s)	61
TatI	WGTACW	3 cut(s)	153, 300, 340
TauI	GCSGC	1 cut(s)	123
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	4 cut(s)	125, 191, 194, 272
TspDTI	ATGAA	3 cut(s)	17, 129, 276
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	25
XspI	CTAG	3 cut(s)	219, 329, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.