Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004918.1

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

24674 .. 26307

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004918.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcatgacagggtcacaatccttttttatgattctaatgacgagttggacactggaagaggaatccgagatggggaattttgccatgtgtttcgaatccccaacactgcaaattcaatcccactgatattcacaccggagcagcaaaagtacgcgctggacttggattcaaaagcggcttctctatctgggtctttgattttgattgtagttctggtgtacagctctgaattgttgcatatcttgatcaaagacagtatttttgttatctgggcatgtggtgtagctgtgattattgcaaattgtgttaaagcccagttgagagtggtgacattgcaggaggaaaatgctgcatctcaaactgaacgcatcaaagaaatggaggacactgaacagaatttgggagatgaactggaaaatgcacaaaagacactgaatgccagtcaatctcgcagatcagatggcgactccaaaacaaccgctgaaactggagatggcatagcatcatcaaagaaagctataatagacaagttagaggaggggaaaatagatttcgttggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.57

Weight (kDa)

4.7

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	2 cut(s)	176, 480
AcsI	RAATTY	3 cut(s)	77, 112, 397
AfaI	GTAC	2 cut(s)	152, 221
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	117, 171
AluBI	AGCT	3 cut(s)	225, 287, 518
AluI	AGCT	3 cut(s)	225, 287, 518
ApeKI	GCWGC	2 cut(s)	142, 350
ApoI	RAATTY	3 cut(s)	77, 112, 397
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspLEI	GCGC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	340
AsuII	TTCGAA	1 cut(s)	94
BbvI	GCAGC	2 cut(s)	154, 337
BccI	CCATC	3 cut(s)	65, 455, 488
BclI	TGATCA	1 cut(s)	246
BisI	GCNGC	3 cut(s)	143, 177, 351
BlsI	GCNGC	3 cut(s)	144, 178, 352
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	362, 378, 512
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	510
Bpu14I	TTCGAA	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	5 cut(s)	58, 316, 417, 441, 493
Bse3DI	GCAATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	332
BseNI	ACTGG	5 cut(s)	58, 316, 417, 441, 493
BseRI	GAGGAG	1 cut(s)	551
BseXI	GCAGC	2 cut(s)	154, 337
Bsh1236I	CGCG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmI	GAATGC	1 cut(s)	442
Bsp119I	TTCGAA	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	246, 455
BspACI	CCGC	2 cut(s)	176, 480
BspFNI	CGCG	1 cut(s)	155
BspT104I	TTCGAA	1 cut(s)	94
BsrDI	GCAATG	1 cut(s)	332
BsrGI	TGTACA	1 cut(s)	219
BsrI	ACTGG	5 cut(s)	58, 316, 417, 441, 493
BssMI	GATC	2 cut(s)	246, 455
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	219
BstBI	TTCGAA	1 cut(s)	94
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	2 cut(s)	249, 458
BstMBI	GATC	2 cut(s)	246, 455
BstNSI	RCATGY	1 cut(s)	279
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	154, 337
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	5 cut(s)	51, 105, 122, 387, 431
CfoI	GCGC	1 cut(s)	157
Csp6I	GTAC	2 cut(s)	151, 220
CviAII	CATG	3 cut(s)	5, 86, 276
CviJI	RGCY	5 cut(s)	179, 225, 287, 314, 518
CviKI_1	RGCY	5 cut(s)	179, 225, 287, 314, 518
CviQI	GTAC	2 cut(s)	151, 220
DpnI	GATC	2 cut(s)	248, 457
DpnII	GATC	2 cut(s)	246, 455
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 89, 279
FaiI	YATR	7 cut(s)	6, 30, 87, 240, 277, 500, 521
FatI	CATG	3 cut(s)	4, 85, 275
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	143, 177, 351
Fsp4HI	GCNGC	3 cut(s)	143, 177, 351
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	3 cut(s)	143, 177, 351
GsuI	CTGGAG	1 cut(s)	510
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	8, 89, 279
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HinfI	GANTC	5 cut(s)	32, 63, 96, 167, 467
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	68, 229, 460
Hpy188III	TCNNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	7 cut(s)	4, 110, 238, 299, 337, 353, 422
Hsp92II	CATG	3 cut(s)	8, 89, 279
HspAI	GCGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	246, 455
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	2 cut(s)	154, 337
LweI	GCATC	3 cut(s)	362, 378, 512
MaeIII	GTNAC	2 cut(s)	13, 328
MalI	GATC	2 cut(s)	248, 457
MboI	GATC	2 cut(s)	246, 455
MboII	GAAGA	1 cut(s)	69
MluCI	AATT	5 cut(s)	77, 112, 230, 301, 397
MlyI	GAGTC	1 cut(s)	461
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	5 cut(s)	53, 334, 376, 529, 532
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	1 cut(s)	137
Mva1269I	GAATGC	1 cut(s)	442
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	2 cut(s)	246, 455
NlaIII	CATG	3 cut(s)	8, 89, 279
NmuCI	GTSAC	2 cut(s)	13, 328
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	94
PctI	GAATGC	1 cut(s)	442
PfeI	GAWTC	4 cut(s)	32, 63, 96, 167
PflFI	GACNNNGTC	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	144, 178, 352
PleI	GAGTC	1 cut(s)	461
PpsI	GAGTC	1 cut(s)	461
PsyI	GACNNNGTC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	152, 221
RsaNI	GTAC	2 cut(s)	151, 220
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	143, 177, 351
Sau3AI	GATC	2 cut(s)	246, 455
SchI	GAGTC	1 cut(s)	461
SetI	ASST	3 cut(s)	227, 289, 520
SfaNI	GCATC	3 cut(s)	362, 378, 512
SfuI	TTCGAA	1 cut(s)	94
Sse9I	AATT	5 cut(s)	77, 112, 230, 301, 397
SsiI	CCGC	2 cut(s)	176, 480
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	94
TasI	AATT	5 cut(s)	77, 112, 230, 301, 397
TatI	WGTACW	1 cut(s)	219
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	32, 63, 96, 167
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	5 cut(s)	58, 112, 129, 394, 438
TseFI	GTSAC	2 cut(s)	13, 328
TseI	GCWGC	2 cut(s)	142, 350
Tsp45I	GTSAC	2 cut(s)	13, 328
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	5 cut(s)	58, 112, 129, 394, 438
Tth111I	GACNNNGTC	1 cut(s)	11
XapI	RAATTY	3 cut(s)	77, 112, 397
XceI	RCATGY	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.