Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Reverse (-)

9176645 .. 9179629

Gene Structure 2985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00087070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGCGGGATTGCTAGCATGGGCGGCGGACGTAGTCGGAGCCGGCGGCGGTCAAGGCGACGAAGACGACAATCCCAATTCAATCCCACTGATATTCACACCGGAGCAGCAAAAGTACGCCCTGGACTTGGATTCAAAAGCGGCTTCTCTCAGCCGTTCGATCCATGATCTGCGGCTCAGAATCCCTCCGAGCGACATCTCCCAACGCCTTCCTCACCTCCACGCTCACTCCCTCGCTTCCAACGCCGCCCTTGCCCTCCAATTGAACGCCCATTCCTCCACCCGAGAACAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCATATGAAAAGGCTATATCAAACTGTGAAAGTAAAATACAGGAGAAGATTGAGGAAGCGGAGTTACTTAGGAGGAAGTTAGAGGAAATGGAGGACACTGAAAAGAATTTGAGAGATGTGCTGGAAGATGCACAGACAGCATTGGATGCCAGTCGATCTTGCGGACCAGATGAATCCGTTGGCGAGTCCAAAACAGAAACTGGGGTTGACATAGAATCATCAAAAAAAGCCATACTAGACAAGTTAGAGGAGAGGAAAAGGGAATTGAGTTCAAAGGAAGCTGTAGTTCAAGATTTAGAGAAAAAATGGGGAGAAATTCAAGATAATGCACTGAGCCAGCCTTCTCCAGCTCAAAGAGAGAAGATTCTGGATAAACAGTATCATAGCCTTATTGAGCAACTAGAAGCAAAACAGGCACAAGCAGAAGGCCTAGTTGGTGAAATTCATTTGAAAGAGATGGAGCTAGAAAGATTAAATGGATTGTGGAGGAAGCTTGAAAGCCGCAACAATGAGATGAGTGCTGCTAGAAATCGGTTTGGACGAAGTACATCTGAAAGAGGATCTGCTTCTTCTGACAATATCCTTGACGCTCATCACAAATATGCTGGTGGCCGAACAGAGAATCAGCAGAGGTTCATGCTGCTCAGGTCGATGTTTGTGCTTTACATTTTAGCTTTGCACATCTTAGTCTTCATCAGGATCTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

346

Amino Acids

38.8

Weight (kDa)

5.31

Isoelectric Point (pI)

59.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	154, 898, 1037
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	3 cut(s)	436, 645, 771
AfaI	GTAC	2 cut(s)	116, 877
AfiI	CCNNNNNNNGG	2 cut(s)	127, 289
AgsI	TTSAA	8 cut(s)	81, 135, 265, 603, 620, 650, 781, 827
AjnI	CCWGG	1 cut(s)	120
AjuI	GAANNNNNNNTTGG	2 cut(s)	747, 779
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	5 cut(s)	611, 680, 793, 823, 1004
AluI	AGCT	5 cut(s)	611, 680, 793, 823, 1004
AlwI	GGATC	3 cut(s)	154, 898, 1037
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	3 cut(s)	291, 757, 940
ApeKI	GCWGC	4 cut(s)	106, 329, 851, 970
ApoI	RAATTY	3 cut(s)	436, 645, 771
AspS9I	GGNCC	2 cut(s)	292, 494
AsuHPI	GGTGA	3 cut(s)	206, 319, 779
AsuNHI	GCTAGC	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	2 cut(s)	69, 1012
BbvI	GCAGC	4 cut(s)	118, 316, 838, 957
BccI	CCATC	1 cut(s)	781
BceAI	ACGGC	1 cut(s)	138
BcgI	CGANNNNNNTGC	2 cut(s)	970, 1004
BciT130I	CCWGG	1 cut(s)	122
BfaI	CTAG	6 cut(s)	14, 566, 731, 761, 794, 855
BfmI	CTRYAG	1 cut(s)	612
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	292, 494
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	2 cut(s)	289, 540
BmsI	GCATC	2 cut(s)	448, 466
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	2 cut(s)	289, 540
BpiI	GAAGAC	2 cut(s)	69, 1012
BpmI	CTGGAG	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	974
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	100
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 289
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	3 cut(s)	295, 480, 535
Bse3DI	GCAATG	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	2 cut(s)	127, 289
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	4 cut(s)	163, 190, 653, 988
BseNI	ACTGG	3 cut(s)	295, 480, 535
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	4 cut(s)	118, 316, 838, 957
BshFI	GGCC	3 cut(s)	293, 759, 942
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	2 cut(s)	42, 101
BslI	CCNNNNNNNGG	2 cut(s)	127, 289
BsnI	GGCC	3 cut(s)	293, 759, 942
BsoBI	CYCGRG	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	159, 166, 485, 890, 1029
BspANI	GGCC	3 cut(s)	293, 759, 942
BspCNI	CTCAG	4 cut(s)	162, 189, 654, 987
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	154, 898, 1037
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	3 cut(s)	295, 480, 535
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	5 cut(s)	159, 166, 485, 890, 1029
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	356, 708
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	3 cut(s)	15, 43, 668
BstDEI	CTNAG	6 cut(s)	149, 176, 398, 662, 974, 1015
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	5 cut(s)	162, 169, 488, 893, 1032
BstMBI	GATC	5 cut(s)	159, 166, 485, 890, 1029
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 476, 743
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	118, 316, 838, 957
BstV2I	GAAGAC	2 cut(s)	69, 1012
BstX2I	RGATCY	2 cut(s)	890, 1029
BstYI	RGATCY	2 cut(s)	890, 1029
BsuRI	GGCC	3 cut(s)	293, 759, 942
BtsCI	GGATG	1 cut(s)	481
BtsIMutI	CAGTG	3 cut(s)	86, 426, 659
Cac8I	GCNNGC	3 cut(s)	15, 43, 668
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	2 cut(s)	292, 494
CseI	GACGC	1 cut(s)	926
Csp6I	GTAC	2 cut(s)	115, 876
CviAII	CATG	3 cut(s)	18, 164, 967
CviQI	GTAC	2 cut(s)	115, 876
DdeI	CTNAG	6 cut(s)	149, 176, 398, 662, 974, 1015
DpnI	GATC	5 cut(s)	161, 168, 487, 892, 1031
DpnII	GATC	5 cut(s)	159, 166, 485, 890, 1029
EaeI	YGGCCR	1 cut(s)	940
EciI	GGCGGA	1 cut(s)	41
Eco147I	AGGCCT	1 cut(s)	759
Eco47I	GGWCC	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	21, 167, 970
FatI	CATG	3 cut(s)	17, 163, 966
FauNDI	CATATG	1 cut(s)	334
FokI	GGATG	1 cut(s)	488
FspBI	CTAG	6 cut(s)	14, 566, 731, 761, 794, 855
GsuI	CTGGAG	1 cut(s)	660
HaeIII	GGCC	3 cut(s)	293, 759, 942
HapII	CCGG	2 cut(s)	42, 101
HgaI	GACGC	1 cut(s)	926
Hin1II	CATG	3 cut(s)	21, 167, 970
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	821
HinfI	GANTC	7 cut(s)	131, 180, 503, 515, 545, 694, 952
HpaII	CCGG	2 cut(s)	42, 101
HphI	GGTGA	3 cut(s)	206, 319, 779
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	5 cut(s)	38, 179, 189, 883, 904
Hpy188III	TCNNGA	4 cut(s)	620, 650, 698, 1027
Hpy8I	GTNNAC	1 cut(s)	538
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	218, 681, 749
HpyCH4III	ACNGT	2 cut(s)	356, 708
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	5 cut(s)	316, 332, 461, 659, 1009
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 476, 743
HpyF3I	CTNAG	6 cut(s)	149, 176, 398, 662, 974, 1015
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	21, 167, 970
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	159, 166, 485, 890, 1029
LmnI	GCTCC	3 cut(s)	38, 103, 790
Lsp1109I	GCAGC	4 cut(s)	118, 316, 838, 957
LweI	GCATC	2 cut(s)	448, 466
MaeI	CTAG	6 cut(s)	14, 566, 731, 761, 794, 855
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	307, 393
MalI	GATC	5 cut(s)	161, 168, 487, 892, 1031
MboI	GATC	5 cut(s)	159, 166, 485, 890, 1029
MboII	GAAGA	6 cut(s)	74, 388, 467, 703, 891, 1012
MfeI	CAATTG	1 cut(s)	260
MflI	RGATCY	2 cut(s)	890, 1029
MluCI	AATT	6 cut(s)	76, 260, 436, 593, 645, 771
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	2 cut(s)	16, 264
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	803
MslI	CAYNNNNRTG	1 cut(s)	930
MspI	CCGG	2 cut(s)	42, 101
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 476, 743
NaeI	GCCGGC	1 cut(s)	43
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	5 cut(s)	159, 166, 485, 890, 1029
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	21, 167, 970
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	1 cut(s)	868
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	6 cut(s)	131, 180, 503, 545, 694, 952
PflFI	GACNNNGTC	1 cut(s)	32
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	292, 494
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	890, 1029
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	116, 877
RsaNI	GTAC	2 cut(s)	115, 876
RseI	CAYNNNNRTG	1 cut(s)	930
SaqAI	TTAA	1 cut(s)	803
Sau3AI	GATC	5 cut(s)	159, 166, 485, 890, 1029
Sau96I	GGNCC	2 cut(s)	292, 494
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	448, 466
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	494
SmiMI	CAYNNNNRTG	1 cut(s)	930
Sse9I	AATT	6 cut(s)	76, 260, 436, 593, 645, 771
SseBI	AGGCCT	1 cut(s)	759
SspMI	CTAG	6 cut(s)	14, 566, 731, 761, 794, 855
StuI	AGGCCT	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	120
TaaI	ACNGT	2 cut(s)	356, 708
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	3 cut(s)	158, 484, 980
TasI	AATT	6 cut(s)	76, 260, 436, 593, 645, 771
TatI	WGTACW	1 cut(s)	875
TauI	GCSGC	6 cut(s)	26, 48, 143, 175, 248, 834
TfiI	GAWTC	6 cut(s)	131, 180, 503, 545, 694, 952
Tru1I	TTAA	1 cut(s)	803
Tru9I	TTAA	1 cut(s)	803
TscAI	CASTG	3 cut(s)	93, 433, 666
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	4 cut(s)	106, 329, 851, 970
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	5 cut(s)	351, 516, 764, 955, 1012
TspGWI	ACGGA	1 cut(s)	496
TspRI	CASTG	3 cut(s)	93, 433, 666
Tth111I	GACNNNGTC	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	494
XapI	RAATTY	3 cut(s)	436, 645, 771
XspI	CTAG	6 cut(s)	14, 566, 731, 761, 794, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.