Rh5CG528500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003438
Physical Location & Seq
Forward (+)
73912947 .. 73927594
14648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG528500.1

Sequence Viewer

Length: 612 bp
ATGATGAGACAGCAATATATTCTCTACATCAGCGAATCCTGGACAAAGGCCCAGTTGAGAGAGGTGACATTGCAGGAGGAAAATGCTGCATATGAAAAGGCTATATCAAACTGTGAAAGTAAAATACAGGAGAAGATTGAGGAAGCAGAGTTACTTAGGAGGAAGTTAGAGGAATTGGAGGACACTAAAAAGAATTTGAGAGATGAGCTGGAAAATGCACAAACAACATTGGATACCAGTCGATCTCGCGGATCAGATGAAAATGTTGGCAACTCCAAAACATCAGTTGAAACTGTAGATGACATGGAATCATCAAAGAAAGCTATAATAGACAAGTTAGAGGAGAGGAAAAGAGAATTGGTTTCGGTTTCTTCCCTGGAGGTTTTAATTTTAAGGTTTATAGACAGAAACCAAGCCGTGGACAGCCGGAATCGACACCGTTTTCTGATAATAGATATAGAGCCCGTGCGTTTTGGCATGACTGTCTCTGTGGGGCTAAACGGCAGTCTATCAGAGAACCCAGAAGCAGGAAAGCAGAGGTTGGAACTTGTAGCTATCAGCTCACACCTATGCTTCATTGGCCTTAGTGTCGTCAGCCCTATTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.17

Weight (kDa)

5.01

Isoelectric Point (pI)

47.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 418
AccII CGCG 1 cut(s) 249
AciI CCGC 1 cut(s) 249
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 193
AfiI CCNNNNNNNGG 2 cut(s) 418, 527
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 2 cut(s) 38, 375
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AluBI AGCT 4 cut(s) 208, 323, 554, 561
AluI AGCT 4 cut(s) 208, 323, 554, 561
Alw26I GTCTC 1 cut(s) 490
AlwI GGATC 1 cut(s) 259
AoxI GGCC 2 cut(s) 48, 580
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 465
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbvI GCAGC 1 cut(s) 73
BceAI ACGGC 2 cut(s) 401, 517
BciT130I CCWGG 2 cut(s) 40, 377
BciVI GTATCC 1 cut(s) 226
BcoDI GTCTC 1 cut(s) 490
BfmI CTRYAG 1 cut(s) 294
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 40, 377
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 40, 377
BmrI ACTGGG 1 cut(s) 46
BmuI ACTGGG 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 398
BsaJI CCNNGG 2 cut(s) 375, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 418, 527
Bse1I ACTGG 2 cut(s) 52, 237
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 2 cut(s) 40, 377
BseDI CCNNGG 2 cut(s) 375, 417
BseLI CCNNNNNNNGG 2 cut(s) 418, 527
BseMI GCAATG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 52, 237
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 249
BshFI GGCC 2 cut(s) 50, 582
BsiSI CCGG 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 418, 527
BsmAI GTCTC 1 cut(s) 490
BsnI GGCC 2 cut(s) 50, 582
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 2 cut(s) 242, 251
BspACI CCGC 1 cut(s) 249
BspANI GGCC 2 cut(s) 50, 582
BspFNI CGCG 1 cut(s) 249
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 68
BsrI ACTGG 2 cut(s) 52, 237
BssECI CCNNGG 2 cut(s) 375, 417
BssMI GATC 2 cut(s) 242, 251
Bst2UI CCWGG 2 cut(s) 40, 377
Bst4CI ACNGT 4 cut(s) 113, 295, 440, 484
BstDEI CTNAG 2 cut(s) 155, 584
BstDSI CCRYGG 1 cut(s) 417
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 2 cut(s) 245, 254
BstMAI GTCTC 1 cut(s) 490
BstMBI GATC 2 cut(s) 242, 251
BstMWI GCNNNNNNNGC 1 cut(s) 579
BstNI CCWGG 2 cut(s) 40, 377
BstSCI CCNGG 2 cut(s) 38, 375
BstSFI CTRYAG 1 cut(s) 294
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 73
BsuI GTATCC 1 cut(s) 226
BsuRI GGCC 2 cut(s) 50, 582
BtgI CCRYGG 1 cut(s) 417
Cfr13I GGNCC 1 cut(s) 49
CviAII CATG 2 cut(s) 304, 478
DdeI CTNAG 2 cut(s) 155, 584
DpnI GATC 2 cut(s) 244, 253
DpnII GATC 2 cut(s) 242, 251
Eco24I GRGCYC 1 cut(s) 465
EcoRII CCWGG 2 cut(s) 38, 375
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 2 cut(s) 307, 481
FatI CATG 2 cut(s) 303, 477
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 2 cut(s) 50, 582
HapII CCGG 1 cut(s) 427
Hin1II CATG 2 cut(s) 307, 481
HinfI GANTC 3 cut(s) 35, 308, 430
HpaII CCGG 1 cut(s) 427
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 3 cut(s) 256, 447, 514
Hpy8I GTNNAC 1 cut(s) 421
HpyCH4III ACNGT 4 cut(s) 113, 295, 440, 484
HpyCH4V TGCA 3 cut(s) 73, 89, 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 579
HpyF3I CTNAG 2 cut(s) 155, 584
Hsp92II CATG 2 cut(s) 307, 481
Kzo9I GATC 2 cut(s) 242, 251
Lsp1109I GCAGC 1 cut(s) 73
MaeIII GTNAC 2 cut(s) 64, 150
MalI GATC 2 cut(s) 244, 253
MboI GATC 2 cut(s) 242, 251
MboII GAAGA 2 cut(s) 145, 363
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 4 cut(s) 173, 193, 356, 387
MmeI TCCRAC 1 cut(s) 522
MseI TTAA 2 cut(s) 386, 392
MslI CAYNNNNRTG 1 cut(s) 568
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 2 cut(s) 40, 377
MvaI CCWGG 2 cut(s) 40, 377
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 579
NdeI CATATG 1 cut(s) 91
NdeII GATC 2 cut(s) 242, 251
NlaIII CATG 2 cut(s) 307, 481
NmuCI GTSAC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 35, 308, 430
PflMI CCANNNNNTGG 1 cut(s) 418
PfoI TCCNGGA 1 cut(s) 38
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 38, 375
PspGI CCWGG 2 cut(s) 38, 375
PspPI GGNCC 1 cut(s) 49
RseI CAYNNNNRTG 1 cut(s) 568
SaqAI TTAA 2 cut(s) 386, 392
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 2 cut(s) 242, 251
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 40, 377
SduI GDGCHC 1 cut(s) 465
SetI ASST 9 cut(s) 66, 210, 325, 384, 398, 542, 556, 563, 570
SfcI CTRYAG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 568
Sse9I AATT 4 cut(s) 173, 193, 356, 387
SsiI CCGC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 38, 375
TaaI ACNGT 4 cut(s) 113, 295, 440, 484
TaqI TCGA 2 cut(s) 241, 433
TasI AATT 4 cut(s) 173, 193, 356, 387
TfiI GAWTC 3 cut(s) 35, 308, 430
Tru1I TTAA 2 cut(s) 386, 392
Tru9I TTAA 2 cut(s) 386, 392
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 108, 273, 565
Van91I CCANNNNNTGG 1 cut(s) 418
XapI RAATTY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.