Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

34975918 .. 34978466

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCGGGATTGCTAGCATGGGCGGCAGACGTAGTCGGAGCCGGCGGCGGTCAAGGCGACGAAGACGACAATCCCGATTCAATCCCACTGATATTCACACCGGAGCAGCAAAAATACGCCATAGAATTAGATTCAAAAGCGGCTTCTCTCAGCCGTTCGATCCATGATCTACGGCTCAGAATCCCTCCGACGGACATCTCCCAACGCCTCCCTCACCTCCACGCTCACTCCCTCGCTTCCAACGCCGCCCTTGCCCTCCAATTGAACGCCCACTCCTCCACTCGCGAACAGGCCCAGTTGAGAGAGGTGACATTGCTGGAGGAAAATGCTGCCTATGAAAAGGCTATATCGAACTGTGAAAGTAAGATACAGGAGAAGATTGAGGAAGTGGAGTTACTTAGGAGGAAGTTAGAGGAAATGGAGGACACTGAAAAGAATTTGAGAGATGAGCTGGAGAGTGCACAGACAGCATTGGATATCAGTCGATCCCACGGATCAGATGAATCCGTTGGCAACCCCAAAACTGTAGTTGAAACTGTAGATGACATAGAATCATCAAAGAAAGCTATACTAGACAAGTTAGAGAAGAGGAAAAGAGAACTGAGTTCAATGGAAGCAGCAGTTCAAGATTTAGAGAAAAAATGGGGAGAAATTCAAGATAATGCACTGAGCCAGCCTTCTCCAGCTCAAAGAGAGAAGATTCTGGATAAACAGTATCACAGTCTTATTGAGCAACTAGAAGCAAAACAGGCACAAGCAGAAGGCCTAGTTGGTGAAATTCATTTGAAAGAGATGGAACTAGAAAGATTAAATGGGTTATGGAGGAAGCTCGAAAGCAGCAACAATGAGATGACTGCTGCTAGAAACCGGTTTGGACGAAGTACATCTGAAAGAGGATTTGCTTCTTCGGACAATATCCTTGACGCTCACCACAAGTATGCTGGTGGCCGAACAGAGAATCAGCAGAGGCTCATGCTGCTCAGGTCGATGTTCGTGCTTTACATTTTAGCTTTGCACATATTAGTCTTCATCAGAATCTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

349

Amino Acids

39.11

Weight (kDa)

5.3

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	285
AciI	CCGC	6 cut(s)	5, 23, 45, 48, 140, 246
AclWI	GGATC	3 cut(s)	154, 480, 502
AcoI	YGGCCR	1 cut(s)	946
AcsI	RAATTY	3 cut(s)	436, 651, 777
AfaI	GTAC	1 cut(s)	883
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgeI	ACCGGT	1 cut(s)	867
AgsI	TTSAA	8 cut(s)	81, 135, 265, 533, 609, 626, 656, 787
AjuI	GAANNNNNNNTTGG	2 cut(s)	753, 785
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	5 cut(s)	451, 566, 686, 829, 1010
AluI	AGCT	5 cut(s)	451, 566, 686, 829, 1010
Alw21I	GWGCWC	1 cut(s)	463
Alw44I	GTGCAC	1 cut(s)	459
AlwI	GGATC	3 cut(s)	154, 480, 502
AoxI	GGCC	3 cut(s)	291, 763, 946
ApaLI	GTGCAC	1 cut(s)	459
ApeKI	GCWGC	6 cut(s)	106, 329, 617, 837, 857, 976
ApoI	RAATTY	3 cut(s)	436, 651, 777
AsiGI	ACCGGT	1 cut(s)	867
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	4 cut(s)	206, 319, 785, 920
AsuNHI	GCTAGC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	463
BarI	GAAGNNNNNNTAC	2 cut(s)	378, 410
BbsI	GAAGAC	2 cut(s)	69, 1018
Bbv12I	GWGCWC	1 cut(s)	463
BbvI	GCAGC	6 cut(s)	118, 316, 629, 844, 849, 963
BccI	CCATC	1 cut(s)	787
BceAI	ACGGC	2 cut(s)	138, 188
BcgI	CGANNNNNNTGC	2 cut(s)	976, 1010
BfaI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
BfmI	CTRYAG	2 cut(s)	525, 537
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	289
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	69, 1018
BpmI	CTGGAG	3 cut(s)	338, 473, 666
Bpu10I	CCTNAGC	1 cut(s)	980
BsaJI	CCNNGG	1 cut(s)	490
BsaWI	WCCGGW	2 cut(s)	100, 867
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 257, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	2 cut(s)	41, 867
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	5 cut(s)	163, 190, 593, 659, 994
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	463
BseXI	GCAGC	6 cut(s)	118, 316, 629, 844, 849, 963
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	3 cut(s)	293, 765, 948
BshTI	ACCGGT	1 cut(s)	867
BsiHKAI	GWGCWC	1 cut(s)	463
BsiSI	CCGG	3 cut(s)	42, 101, 868
BslI	CCNNNNNNNGG	1 cut(s)	190
BsnI	GGCC	3 cut(s)	293, 765, 948
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp143I	GATC	4 cut(s)	159, 166, 485, 494
Bsp68I	TCGCGA	1 cut(s)	285
BspACI	CCGC	6 cut(s)	5, 23, 45, 48, 140, 246
BspANI	GGCC	3 cut(s)	293, 765, 948
BspCNI	CTCAG	5 cut(s)	162, 189, 594, 660, 993
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	3 cut(s)	154, 480, 502
BsrDI	GCAATG	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	41, 867
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	2 cut(s)	41, 867
BssECI	CCNNGG	1 cut(s)	490
BssMI	GATC	4 cut(s)	159, 166, 485, 494
Bst4CI	ACNGT	5 cut(s)	356, 526, 538, 714, 722
Bst6I	CTCTTC	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	15, 43, 674
BstDEI	CTNAG	6 cut(s)	149, 176, 398, 602, 668, 980
BstDSI	CCRYGG	1 cut(s)	490
BstFNI	CGCG	1 cut(s)	285
BstKTI	GATC	4 cut(s)	162, 169, 488, 497
BstMBI	GATC	4 cut(s)	159, 166, 485, 494
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
BstSFI	CTRYAG	2 cut(s)	525, 537
BstSLI	GKGCMC	1 cut(s)	463
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	6 cut(s)	118, 316, 629, 844, 849, 963
BstV2I	GAAGAC	2 cut(s)	69, 1018
BsuRI	GGCC	3 cut(s)	293, 765, 948
BtgI	CCRYGG	1 cut(s)	490
BtsIMutI	CAGTG	3 cut(s)	86, 426, 665
BtuMI	TCGCGA	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	15, 43, 674
Cfr10I	RCCGGY	2 cut(s)	41, 867
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	882
CspAI	ACCGGT	1 cut(s)	867
CviAII	CATG	3 cut(s)	18, 164, 973
CviQI	GTAC	1 cut(s)	882
DdeI	CTNAG	6 cut(s)	149, 176, 398, 602, 668, 980
DpnI	GATC	4 cut(s)	161, 168, 487, 496
DpnII	GATC	4 cut(s)	159, 166, 485, 494
EaeI	YGGCCR	1 cut(s)	946
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco147I	AGGCCT	1 cut(s)	765
Eco32I	GATATC	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	478
FaeI	CATG	3 cut(s)	21, 167, 976
FatI	CATG	3 cut(s)	17, 163, 972
FspBI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
GsuI	CTGGAG	3 cut(s)	338, 473, 666
HaeIII	GGCC	3 cut(s)	293, 765, 948
HapII	CCGG	3 cut(s)	42, 101, 868
HgaI	GACGC	1 cut(s)	932
Hin1II	CATG	3 cut(s)	21, 167, 976
HinfI	GANTC	8 cut(s)	77, 131, 180, 503, 551, 700, 958, 1035
HpaII	CCGG	3 cut(s)	42, 101, 868
HphI	GGTGA	4 cut(s)	206, 319, 785, 920
Hpy166II	GTNNAC	1 cut(s)	461
Hpy188I	TCNGA	7 cut(s)	38, 179, 189, 499, 889, 910, 1034
Hpy188III	TCNNGA	5 cut(s)	74, 284, 626, 656, 704
Hpy8I	GTNNAC	1 cut(s)	461
Hpy99I	CGWCG	2 cut(s)	62, 193
HpyAV	CCTTC	2 cut(s)	687, 755
HpyCH4III	ACNGT	5 cut(s)	356, 526, 538, 714, 722
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	3 cut(s)	461, 665, 1015
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
HpyF3I	CTNAG	6 cut(s)	149, 176, 398, 602, 668, 980
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	3 cut(s)	21, 167, 976
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	159, 166, 485, 494
LmnI	GCTCC	2 cut(s)	38, 103
Lsp1109I	GCAGC	6 cut(s)	118, 316, 629, 844, 849, 963
MaeI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	307, 393
MalI	GATC	4 cut(s)	161, 168, 487, 496
MboI	GATC	4 cut(s)	159, 166, 485, 494
MboII	GAAGA	6 cut(s)	74, 388, 598, 709, 897, 1018
MfeI	CAATTG	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	463
MluCI	AATT	5 cut(s)	125, 260, 436, 651, 777
MmeI	TCCRAC	3 cut(s)	16, 212, 264
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	1 cut(s)	809
MslI	CAYNNNNRTG	1 cut(s)	936
MspI	CCGG	3 cut(s)	42, 101, 868
MunI	CAATTG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	7 cut(s)	23, 54, 242, 251, 467, 749, 976
NaeI	GCCGGC	1 cut(s)	43
NdeII	GATC	4 cut(s)	159, 166, 485, 494
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	21, 167, 976
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	307
NruI	TCGCGA	1 cut(s)	285
PceI	AGGCCT	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	8 cut(s)	77, 131, 180, 503, 551, 700, 958, 1035
PflFI	GACNNNGTC	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	867
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	285
RsaI	GTAC	1 cut(s)	883
RsaNI	GTAC	1 cut(s)	882
RseI	CAYNNNNRTG	1 cut(s)	936
SaqAI	TTAA	1 cut(s)	809
Sau3AI	GATC	4 cut(s)	159, 166, 485, 494
Sau96I	GGNCC	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	463
SetI	ASST	9 cut(s)	33, 219, 309, 453, 568, 688, 831, 986, 1012
SfcI	CTRYAG	2 cut(s)	525, 537
SmiMI	CAYNNNNRTG	1 cut(s)	936
Sse9I	AATT	5 cut(s)	125, 260, 436, 651, 777
SseBI	AGGCCT	1 cut(s)	765
SsiI	CCGC	6 cut(s)	5, 23, 45, 48, 140, 246
SspMI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861
StuI	AGGCCT	1 cut(s)	765
TaaI	ACNGT	5 cut(s)	356, 526, 538, 714, 722
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	158, 350, 484, 831, 986
TasI	AATT	5 cut(s)	125, 260, 436, 651, 777
TatI	WGTACW	1 cut(s)	881
TauI	GCSGC	4 cut(s)	26, 48, 143, 248
TfiI	GAWTC	8 cut(s)	77, 131, 180, 503, 551, 700, 958, 1035
Tru1I	TTAA	1 cut(s)	809
Tru9I	TTAA	1 cut(s)	809
TscAI	CASTG	3 cut(s)	93, 433, 672
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	6 cut(s)	106, 329, 617, 837, 857, 976
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	4 cut(s)	351, 516, 770, 1018
TspGWI	ACGGA	3 cut(s)	206, 496, 507
TspRI	CASTG	3 cut(s)	93, 433, 672
Tth111I	GACNNNGTC	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	459
XapI	RAATTY	3 cut(s)	436, 651, 777
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XspI	CTAG	6 cut(s)	14, 572, 737, 767, 800, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.