Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003438

Physical Location & Seq

Genomic Coordinates Forward (+)

80225277 .. 80226030

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG571700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGGGATTGCTAGCATGGGCGGCGGACGTAGTCGGAGCCGGCCGACGTAGTTGTGTTTCTGGTTCAAAGTTTGGATCTTTCTTATCTGGGAATGTTGCTTTAATTCGAATTGAATATTGTTATCAAGAAATGGAGGACACTGAAAAGAATTTGAGAGATGTGCTGGAAGATGCACAGACAGCATTGGATGCCAGTCGATCTTGCGGATCAGATGAATCCGTTGGCGAGTCCCAAACAACAGTTGAAACTGGGGATGACATAGAATCATCAAAAAAAGCTATACTAGACGAGTTAGAGGAGAGGAAAAGAGATTTGGTTGGTTGCACCTTTCTTTTGATCTTACAATTCTTTCAAATCTTGATCTATTTTCAGAGTGCCTGTGCACTTGTGTTGTCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

134

Amino Acids

14.68

Weight (kDa)

4.36

Isoelectric Point (pI)

62.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15880
fragaria_vesca	FvH4_6g45610 FvH4_6g45610
malus_domestica	MD09G1081200.v1.1 MD11G1231800.v1.1 MD17G1072400.v1.1 MD17G1072600.v1.1
prunus_persica	Prupe.3G242300_v2.0.a1
pyrus_communis	pycom09g00790 pycom09g18570 pycom17g07190 pycom17g07340
rosa_chinensis	RchiOBHm_Chr2g0163651 RchiOBHm_Chr2g0163681 RchiOBHm_Chr2g0163701 RchiOBHm_Chr2g0163761
rosa_multiflora	Rmu_sc0004918.1_g000003 Rmu_sc0004918.1_g000011
rosa_roxburghii	Rroxscaffold_1G00007490 Rroxscaffold_2G00087070
rosa_rugosa	Rorug02G0504100.1 Rorug02G0504200 Rorug02G0504400
rosa_samantha	Rh2AG307600 Rh2AG571700 Rh2AG572100 Rh2AG572300 Rh2CG553500 Rh2CG553600 Rh2CG553800 Rh3CG234000 Rh5CG528500 Rh6CG196300 Rh7BG194800 Rh7BG318600
rosa_wichuraiana	Rw2G047300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 23, 26, 207
AclWI	GGATC	2 cut(s)	85, 217
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	69, 116, 248, 356
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	388
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	2 cut(s)	85, 217
AoxI	GGCC	1 cut(s)	43
ApaLI	GTGCAC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	109
AsuNHI	GCTAGC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	388
Bbv12I	GWGCWC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	14, 287
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	40
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	2 cut(s)	163, 181
BmtI	GCTAGC	1 cut(s)	17
BmuI	ACTGGG	1 cut(s)	261
Bpu14I	TTCGAA	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	195, 256
BseGI	GGATG	2 cut(s)	196, 262
BseNI	ACTGG	2 cut(s)	195, 256
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	388
BseX3I	CGGCCG	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	217
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp143I	GATC	5 cut(s)	77, 200, 209, 339, 363
BspACI	CCGC	4 cut(s)	5, 23, 26, 207
BspANI	GGCC	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	40
BspOI	GCTAGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	85, 217
BspT104I	TTCGAA	1 cut(s)	109
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	195, 256
BssAI	RCCGGY	1 cut(s)	41
BssMI	GATC	5 cut(s)	77, 200, 209, 339, 363
Bst4CI	ACNGT	1 cut(s)	244
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	109
BstC8I	GCNNGC	2 cut(s)	15, 43
BstF5I	GGATG	2 cut(s)	196, 262
BstKTI	GATC	5 cut(s)	80, 203, 212, 342, 366
BstMBI	GATC	5 cut(s)	77, 200, 209, 339, 363
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 182, 191
BstSLI	GKGCMC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	196, 262
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	2 cut(s)	15, 43
Cfr10I	RCCGGY	1 cut(s)	41
CviAII	CATG	1 cut(s)	18
CviJI	RGCY	3 cut(s)	41, 45, 281
CviKI_1	RGCY	3 cut(s)	41, 45, 281
DpnI	GATC	5 cut(s)	79, 202, 211, 341, 365
DpnII	GATC	5 cut(s)	77, 200, 209, 339, 363
EaeI	YGGCCR	1 cut(s)	43
EagI	CGGCCG	1 cut(s)	43
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	43
Eco52I	CGGCCG	1 cut(s)	43
FaeI	CATG	1 cut(s)	21
FaiI	YATR	3 cut(s)	19, 263, 284
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	2 cut(s)	203, 269
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	2 cut(s)	14, 287
GluI	GCNGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	1 cut(s)	21
HinfI	GANTC	3 cut(s)	218, 230, 266
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	3 cut(s)	38, 214, 375
Hpy188III	TCNNGA	2 cut(s)	128, 361
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	1 cut(s)	51
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	2 cut(s)	30, 49
HpyCH4V	TGCA	3 cut(s)	176, 327, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 182, 191
HpySE526I	ACGT	2 cut(s)	30, 49
Hsp92II	CATG	1 cut(s)	21
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	5 cut(s)	77, 200, 209, 339, 363
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	7 cut(s)	48, 55, 75, 152, 208, 237, 394
LweI	GCATC	2 cut(s)	163, 181
MaeI	CTAG	2 cut(s)	14, 287
MaeII	ACGT	2 cut(s)	30, 49
MalI	GATC	5 cut(s)	79, 202, 211, 341, 365
MboI	GATC	5 cut(s)	77, 200, 209, 339, 363
MboII	GAAGA	1 cut(s)	182
MflI	RGATCY	1 cut(s)	77
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	4 cut(s)	105, 111, 151, 347
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	130, 292, 297
MroNI	GCCGGC	1 cut(s)	41
MseI	TTAA	2 cut(s)	104, 403
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	3 cut(s)	23, 182, 191
NaeI	GCCGGC	1 cut(s)	43
NdeII	GATC	5 cut(s)	77, 200, 209, 339, 363
NgoMIV	GCCGGC	1 cut(s)	41
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	1 cut(s)	40
NspV	TTCGAA	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	218, 266
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	25
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	77
PsyI	GACNNNGTC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	104, 403
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	5 cut(s)	77, 200, 209, 339, 363
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	4 cut(s)	33, 52, 283, 332
SfaNI	GCATC	2 cut(s)	163, 181
SfuI	TTCGAA	1 cut(s)	109
Sse9I	AATT	4 cut(s)	105, 111, 151, 347
SsiI	CCGC	4 cut(s)	5, 23, 26, 207
SspI	AATATT	1 cut(s)	119
SspMI	CTAG	2 cut(s)	14, 287
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	2 cut(s)	33, 52
TaqI	TCGA	2 cut(s)	109, 199
TasI	AATT	4 cut(s)	105, 111, 151, 347
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	218, 266
Tru1I	TTAA	2 cut(s)	104, 403
Tru9I	TTAA	2 cut(s)	104, 403
TscAI	CASTG	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	148
Tth111I	GACNNNGTC	1 cut(s)	32
VneI	GTGCAC	1 cut(s)	384
XapI	RAATTY	1 cut(s)	151
XspI	CTAG	2 cut(s)	14, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.