Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004135

Physical Location & Seq

Genomic Coordinates Reverse (-)

5406863 .. 5411766

Gene Structure 4904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCTATGGAAGGTGTTTTTCTAGAGAAAACCAAAACAAACACAACAACTACTCTCCCTGATCTATCTCTCCACATCAGTCTCCCAGATATTCATCAATACCATCACAATGAATCTTCTAAAGAATCTTCAAGAAGATCCTCCCAACTCGAAAACAACAACCGATCGTCCAACTTTGAACTCTCTTTATCTCATCATAACCATCCAACAGCAAGAATCTTCCATTGTCCTGATCGAAGAACCCTTAATCTTCCTCATCAGCAGCATTACAACAACCCTATCATCAATGGTGTTCATCAAAGGGTCGATGAATCCGAGATTAGTAATCTCCACCGTCCAATTAGAGGCATCCCGGTCTATCACAACCGTTCATTCCCTTTCCACCAACAAAACTCTTCATTACCTTCTCTTGGAGGAGGAGACATGGATCAAATCTCAATCTTAAACTCATCTTCCGGCTACAACAACGCTTACCGATCATTACAATCTTCCCCGAGGCTTAAAGGTGTTCCTTTGCATCATCATCATCATCATAATCAGTATGGAGTCGTTGGATCTTCAGATTCGTCTTCTCCTCATCACCATAACCATCATCATCATGGGATGATCAGATCAAGATTCTTGCCTAAGATGCCGACAAAGCGAAGCATGAGAGCTCCAAGGATGCGTTGGACTAGTAGCCTCCACGCGCGGTTTGTTCACGCTGTTGAGCTTCTAGGCGGCCATGAAAGAGCAACTCCAAAGTCGGTTCTTGAGCTCATGGATGTAAAAGACTTAACTTTAGCACATGTGAAGAGCCATTTGCAGATGTATCGAACTGTTAAGACCACTAACAAGCCTGCTGCTTCATCAGATGGGTCAGGAGAAGAAGAAATGGGCATAAATGGAAACGAAGTTCATCATCAATCATCGACGGATCAAAGGGCACAATCTGATGATACTTCTCTTCATCAAGAAACTGACATTTCTTCCACACAACCTCGTTGGAGTAACTCTTCACGAGAGACATGGCCATTAAGTAATAACTGCTCAAGCGACATAGATACAATGATCAGAACTTCATCAACATCAATGATCTCTCATTATCAAAGATCCAGCATTCAAAATCAGGAGCAAAGGTCGAATGATCAAGCAAAGAGGTGTGGAAATCTTAGTTGTGAAAATCCAAGTTTGGAGTTTACATTAGGCAGACCAGATTGGCACGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010051 GO:0010158 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

403

Amino Acids

45.84

Weight (kDa)

8.64

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	221 - 272	2.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16560
fragaria_vesca	FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780
malus_domestica	MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1
prunus_persica	Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1
pyrus_communis	pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200
rosa_chinensis	RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811
rosa_laevigata	RLG00000005502
rosa_multiflora	Rmu_sc0006214.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275540
rosa_rugosa	Rorug06G0409500 Rorug06G0409500 Rorug06G0409500
rosa_samantha	Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400
rosa_wichuraiana	Rw7G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	689, 691
AciI	CCGC	2 cut(s)	691, 720
AclWI	GGATC	5 cut(s)	132, 435, 562, 924, 1086
AcoI	YGGCCR	2 cut(s)	721, 1010
AcuI	CTGAAG	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	344, 410
AflIII	ACRYGT	1 cut(s)	787
AgsI	TTSAA	3 cut(s)	132, 179, 1103
AhlI	ACTAGT	1 cut(s)	674
AloI	GAACNNNNNNTCC	2 cut(s)	879, 911
AluBI	AGCT	3 cut(s)	656, 712, 757
AluI	AGCT	3 cut(s)	656, 712, 757
Alw21I	GWGCWC	2 cut(s)	658, 759
Alw26I	GTCTC	3 cut(s)	86, 414, 998
AlwI	GGATC	5 cut(s)	132, 435, 562, 924, 1086
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	2 cut(s)	721, 1010
ApeKI	GCWGC	2 cut(s)	262, 842
AspLEI	GCGC	1 cut(s)	691
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	928
BalI	TGGCCA	1 cut(s)	1012
BanII	GRGCYC	2 cut(s)	658, 759
BauI	CACGAG	2 cut(s)	999, 1202
BbsI	GAAGAC	1 cut(s)	561
Bbv12I	GWGCWC	2 cut(s)	658, 759
BbvI	GCAGC	2 cut(s)	274, 829
BccI	CCATC	4 cut(s)	111, 210, 597, 848
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BclI	TGATCA	3 cut(s)	606, 1050, 1126
BcnI	CCSGG	1 cut(s)	353
BcoDI	GTCTC	3 cut(s)	86, 414, 998
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	3 cut(s)	23, 675, 716
BisI	GCNGC	3 cut(s)	263, 721, 843
BlsI	GCNGC	3 cut(s)	264, 722, 844
Bme1390I	CCNGG	1 cut(s)	353
BmeT110I	CYCGRG	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	4 cut(s)	357, 526, 621, 654
BpiI	GAAGAC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	773, 1015
BpuMI	CCSGG	1 cut(s)	353
BsaBI	GATNNNNATC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	494, 659
BsaXI	ACNNNNNCTCC	2 cut(s)	1103, 1133
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 410
Bse8I	GATNNNNATC	1 cut(s)	93
BseDI	CCNNGG	2 cut(s)	494, 659
BseGI	GGATG	5 cut(s)	202, 348, 609, 669, 769
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	2 cut(s)	344, 410
BseRI	GAGGAG	3 cut(s)	429, 432, 564
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	274, 829
Bsh1236I	CGCG	2 cut(s)	689, 691
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	723, 1012
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	658, 759
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	353, 456
BslI	CCNNNNNNNGG	2 cut(s)	344, 410
BsmAI	GTCTC	3 cut(s)	86, 414, 998
BsmI	GAATGC	1 cut(s)	1098
BsnI	GGCC	2 cut(s)	723, 1012
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	3 cut(s)	658, 759, 928
BspACI	CCGC	2 cut(s)	691, 720
BspANI	GGCC	2 cut(s)	723, 1012
BspFNI	CGCG	2 cut(s)	689, 691
BspPI	GGATC	5 cut(s)	132, 435, 562, 924, 1086
BspQI	GCTCTTC	1 cut(s)	788
BssECI	CCNNGG	2 cut(s)	494, 659
BssSI	CACGAG	2 cut(s)	999, 1202
BssT1I	CCWWGG	1 cut(s)	659
Bst2BI	CACGAG	2 cut(s)	999, 1202
Bst4CI	ACNGT	3 cut(s)	335, 368, 820
Bst6I	CTCTTC	4 cut(s)	400, 788, 951, 1000
BstC8I	GCNNGC	1 cut(s)	840
BstDEI	CTNAG	2 cut(s)	627, 1151
BstF5I	GGATG	5 cut(s)	202, 348, 609, 669, 769
BstFNI	CGCG	2 cut(s)	689, 691
BstHHI	GCGC	1 cut(s)	691
BstMAI	GTCTC	3 cut(s)	86, 414, 998
BstMCI	CGRYCG	1 cut(s)	167
BstMWI	GCNNNNNNNGC	2 cut(s)	631, 640
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	928
BstUI	CGCG	2 cut(s)	689, 691
BstV1I	GCAGC	2 cut(s)	274, 829
BstV2I	GAAGAC	1 cut(s)	561
BstX2I	RGATCY	3 cut(s)	137, 554, 1091
BstYI	RGATCY	3 cut(s)	137, 554, 1091
BsuRI	GGCC	2 cut(s)	723, 1012
BtsCI	GGATG	5 cut(s)	202, 348, 609, 669, 769
Cac8I	GCNNGC	1 cut(s)	840
CfoI	GCGC	1 cut(s)	691
CviAII	CATG	7 cut(s)	424, 599, 649, 725, 760, 788, 1008
DdeI	CTNAG	2 cut(s)	627, 1151
EaeI	YGGCCR	2 cut(s)	721, 1010
Eam1104I	CTCTTC	4 cut(s)	400, 788, 951, 1000
EarI	CTCTTC	4 cut(s)	400, 788, 951, 1000
Ecl136II	GAGCTC	2 cut(s)	656, 757
Eco130I	CCWWGG	1 cut(s)	659
Eco24I	GRGCYC	2 cut(s)	658, 759
Eco53kI	GAGCTC	2 cut(s)	656, 757
Eco57I	CTGAAG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	493
EcoICRI	GAGCTC	2 cut(s)	656, 757
EcoT14I	CCWWGG	1 cut(s)	659
EcoT38I	GRGCYC	2 cut(s)	658, 759
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	7 cut(s)	427, 602, 652, 728, 763, 791, 1011
FatI	CATG	7 cut(s)	423, 598, 648, 724, 759, 787, 1007
FbaI	TGATCA	3 cut(s)	606, 1050, 1126
Fnu4HI	GCNGC	3 cut(s)	263, 721, 843
FokI	GGATG	5 cut(s)	189, 335, 616, 676, 776
FriOI	GRGCYC	2 cut(s)	658, 759
Fsp4HI	GCNGC	3 cut(s)	263, 721, 843
FspBI	CTAG	3 cut(s)	23, 675, 716
GlaI	GCGC	1 cut(s)	690
GluI	GCNGC	3 cut(s)	263, 721, 843
HaeIII	GGCC	2 cut(s)	723, 1012
HapII	CCGG	2 cut(s)	353, 456
HhaI	GCGC	1 cut(s)	691
Hin1II	CATG	7 cut(s)	427, 602, 652, 728, 763, 791, 1011
Hin6I	GCGC	1 cut(s)	689
HinP1I	GCGC	1 cut(s)	689
HinfI	GANTC	7 cut(s)	113, 125, 216, 311, 546, 563, 618
HpaII	CCGG	2 cut(s)	353, 456
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	700, 1179
Hpy188I	TCNGA	6 cut(s)	316, 562, 611, 853, 934, 1055
Hpy188III	TCNNGA	9 cut(s)	23, 132, 230, 615, 752, 861, 953, 999, 1109
Hpy8I	GTNNAC	2 cut(s)	700, 1179
Hpy99I	CGWCG	1 cut(s)	916
HpyAV	CCTTC	2 cut(s)	5, 414
HpyCH4III	ACNGT	3 cut(s)	335, 368, 820
HpyCH4V	TGCA	2 cut(s)	517, 805
HpyF10VI	GCNNNNNNNGC	2 cut(s)	631, 640
HpyF3I	CTNAG	2 cut(s)	627, 1151
Hsp92II	CATG	7 cut(s)	427, 602, 652, 728, 763, 791, 1011
HspAI	GCGC	1 cut(s)	689
Ksp22I	TGATCA	3 cut(s)	606, 1050, 1126
LguI	GCTCTTC	1 cut(s)	788
LmnI	GCTCC	2 cut(s)	661, 1111
Lsp1109I	GCAGC	2 cut(s)	274, 829
LweI	GCATC	4 cut(s)	357, 526, 621, 654
MaeI	CTAG	3 cut(s)	23, 675, 716
MaeIII	GTNAC	1 cut(s)	989
MflI	RGATCY	3 cut(s)	137, 554, 1091
MhlI	GDGCHC	3 cut(s)	658, 759, 928
MlsI	TGGCCA	1 cut(s)	1012
MluCI	AATT	1 cut(s)	339
MluNI	TGGCCA	1 cut(s)	1012
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	5 cut(s)	195, 230, 532, 650, 965
Mox20I	TGGCCA	1 cut(s)	1012
MscI	TGGCCA	1 cut(s)	1012
MseI	TTAA	6 cut(s)	246, 443, 501, 776, 822, 1016
MslI	CAYNNNNRTG	2 cut(s)	108, 597
Msp20I	TGGCCA	1 cut(s)	1012
MspI	CCGG	2 cut(s)	353, 456
MspR9I	CCNGG	1 cut(s)	353
Mva1269I	GAATGC	1 cut(s)	1098
MvnI	CGCG	2 cut(s)	689, 691
MwoI	GCNNNNNNNGC	2 cut(s)	631, 640
NciI	CCSGG	1 cut(s)	353
NlaIII	CATG	7 cut(s)	427, 602, 652, 728, 763, 791, 1011
NspI	RCATGY	1 cut(s)	791
PciI	ACATGT	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PctI	GAATGC	1 cut(s)	1098
PfeI	GAWTC	6 cut(s)	113, 125, 216, 311, 563, 618
PkrI	GCNGC	3 cut(s)	264, 722, 844
Ple19I	CGATCG	1 cut(s)	167
PleI	GAGTC	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	554
PscI	ACATGT	1 cut(s)	787
Psp124BI	GAGCTC	2 cut(s)	658, 759
PsuI	RGATCY	3 cut(s)	137, 554, 1091
PvuI	CGATCG	1 cut(s)	167
RseI	CAYNNNNRTG	2 cut(s)	108, 597
SacI	GAGCTC	2 cut(s)	658, 759
SapI	GCTCTTC	1 cut(s)	788
SaqAI	TTAA	6 cut(s)	246, 443, 501, 776, 822, 1016
SatI	GCNGC	3 cut(s)	263, 721, 843
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	658, 759, 928
SetI	ASST	9 cut(s)	16, 406, 508, 658, 714, 759, 982, 1121, 1142
SfaNI	GCATC	4 cut(s)	357, 526, 621, 654
SmiMI	CAYNNNNRTG	2 cut(s)	108, 597
SmlI	CTYRAG	2 cut(s)	752, 1030
SmoI	CTYRAG	2 cut(s)	752, 1030
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	691, 720
SspMI	CTAG	3 cut(s)	23, 675, 716
SstI	GAGCTC	2 cut(s)	658, 759
StyD4I	CCNGG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	335, 368, 820
TaqI	TCGA	6 cut(s)	150, 235, 306, 814, 911, 1121
TasI	AATT	1 cut(s)	339
TauI	GCSGC	1 cut(s)	723
TfiI	GAWTC	6 cut(s)	113, 125, 216, 311, 563, 618
Tru1I	TTAA	6 cut(s)	246, 443, 501, 776, 822, 1016
Tru9I	TTAA	6 cut(s)	246, 443, 501, 776, 822, 1016
TseI	GCWGC	2 cut(s)	262, 842
TspGWI	ACGGA	1 cut(s)	929
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	791
XcmI	CCANNNNNNNNNTGG	2 cut(s)	596, 666
XspI	CTAG	3 cut(s)	23, 675, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.