RLG00000005502
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004135
Physical Location & Seq
Forward (+)
68123022 .. 68127307
4286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005502

Sequence Viewer

Length: 1413 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTCACAGTGACGATGCTGCTAGTACTCCACTCGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACAAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGGAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCGGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGACCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGCTGCTGCTATGGGAGCGGGAGTAGGAGGAGGGTTTGAGTCCAGGTTTAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGCTCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGTGATGAAGATCTTATGTCCACAACAACGACAACGCATCATCAGAATTCAGCAAATGGTTTACTAAACCAAAGAGGAGGCTCAAATGCAAGTTTAAATTTAGAGCAAGATACGGAACACCCTTCTAGCAATCTGTGGGGTAACTCTTCCAGTAGAGGAGCATGGGTGCAAGCAAGTTCAAGAGATCTAAATGGCCACTCTCAACATAGAAGTCCTTCTGGAAACCTATTTCATCATCACGAGGGAAGTGATTTTGCCCAATCACGAAGTAGCTTTGTAGATCTCTCAAATGGGGACCTCATCAAAAATCCAAGCTTGGAGTTCAGCTTAGGGCGACCGGACTGGCACAGCAAAGAAGTACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

471

Amino Acids

51.22

Weight (kDa)

6.61

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 282 - 333 3.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 838
AccBSI CCGCTC 2 cut(s) 314, 575
AcoI YGGCCR 3 cut(s) 315, 904, 1237
AcsI RAATTY 3 cut(s) 393, 1090, 1141
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 2 cut(s) 187, 1404
AfiI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 913, 1038
AgsI TTSAA 3 cut(s) 31, 109, 1224
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 599
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 708
Alw21I GWGCWC 5 cut(s) 79, 144, 742, 897, 942
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 658, 688, 691
AoxI GGCC 6 cut(s) 102, 243, 315, 343, 904, 1237
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 393, 1090, 1141
Asp700I GAANNNNTTC 1 cut(s) 1258
AspS9I GGNCC 3 cut(s) 460, 855, 1339
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 662, 770, 1058
AvaII GGWCC 3 cut(s) 460, 855, 1339
BaeGI GKGCMC 2 cut(s) 144, 841
BalI TGGCCA 1 cut(s) 1239
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 3 cut(s) 742, 897, 942
BauI CACGAG 1 cut(s) 1283
Bbv12I GWGCWC 5 cut(s) 79, 144, 742, 897, 942
BccI CCATC 4 cut(s) 392, 681, 846, 1031
BceAI ACGGC 4 cut(s) 163, 358, 508, 872
BciT130I CCWGG 1 cut(s) 601
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 6 cut(s) 155, 183, 371, 468, 795, 1170
BfmI CTRYAG 3 cut(s) 90, 692, 1023
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 5 cut(s) 791, 955, 1054, 1228, 1324
BmcAI AGTACT 2 cut(s) 187, 1404
Bme1390I CCNGG 2 cut(s) 555, 601
Bme18I GGWCC 3 cut(s) 460, 855, 1339
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 3 cut(s) 460, 855, 1339
BmiI GGNNCC 3 cut(s) 462, 840, 1340
BmrFI CCNGG 2 cut(s) 555, 601
BmsI GCATC 3 cut(s) 166, 706, 1090
BoxI GACNNNNGTC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 1372
BpuMI CCSGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 1053
BsaJI CCNNGG 1 cut(s) 898
BsaWI WCCGGW 1 cut(s) 1381
BsaXI ACNNNNNCTCC 6 cut(s) 564, 594, 705, 735, 1194, 1224
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 389, 469, 913, 1038
Bse1I ACTGG 3 cut(s) 398, 1194, 1391
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 898
BseGI GGATG 1 cut(s) 952
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 913, 1038
BseMII CTCAG 2 cut(s) 198, 1047
BseNI ACTGG 3 cut(s) 398, 1194, 1391
BseRI GAGGAG 3 cut(s) 600, 1134, 1215
BseSI GKGCMC 2 cut(s) 144, 841
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 2 cut(s) 318, 1382
BshFI GGCC 6 cut(s) 104, 245, 317, 345, 906, 1239
BshNI GGYRCC 1 cut(s) 838
BsiEI CGRYCG 2 cut(s) 318, 1382
BsiHKAI GWGCWC 5 cut(s) 79, 144, 742, 897, 942
BsiSI CCGG 2 cut(s) 555, 1382
BslFI GGGAC 1 cut(s) 1352
BslI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 913, 1038
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 1352
BsmI GAATGC 1 cut(s) 852
BsnI GGCC 6 cut(s) 104, 245, 317, 345, 906, 1239
Bsp1286I GDGCHC 6 cut(s) 79, 144, 742, 841, 897, 942
Bsp143I GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
BspANI GGCC 6 cut(s) 104, 245, 317, 345, 906, 1239
BspCNI CTCAG 2 cut(s) 199, 1046
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 3 cut(s) 462, 840, 1340
BspMAI CTGCAG 2 cut(s) 94, 696
BspMI ACCTGC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 838
BsrBI CCGCTC 2 cut(s) 314, 575
BsrI ACTGG 3 cut(s) 398, 1194, 1391
BssECI CCNNGG 1 cut(s) 898
BssMI GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
BssSI CACGAG 1 cut(s) 1283
BssT1I CCWWGG 1 cut(s) 898
Bst2BI CACGAG 1 cut(s) 1283
Bst2UI CCWGG 1 cut(s) 601
Bst4CI ACNGT 5 cut(s) 74, 170, 626, 654, 1003
Bst6I CTCTTC 1 cut(s) 1195
BstAPI GCANNNNNTGC 2 cut(s) 98, 691
BstC8I GCNNGC 1 cut(s) 1215
BstDEI CTNAG 4 cut(s) 207, 629, 1033, 1372
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 952
BstKTI GATC 7 cut(s) 46, 301, 794, 958, 1057, 1231, 1327
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
BstMCI CGRYCG 2 cut(s) 318, 1382
BstMWI GCNNNNNNNGC 5 cut(s) 98, 242, 572, 691, 694
BstNI CCWGG 1 cut(s) 601
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 553, 599
BstSFI CTRYAG 3 cut(s) 90, 692, 1023
BstSLI GKGCMC 2 cut(s) 144, 841
BstX2I RGATCY 5 cut(s) 791, 955, 1054, 1228, 1324
BstYI RGATCY 5 cut(s) 791, 955, 1054, 1228, 1324
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 6 cut(s) 104, 245, 317, 345, 906, 1239
BtgZI GCGATG 1 cut(s) 865
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 952
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 936, 1011
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 1215
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 658, 688, 691
CciI TCATGA 1 cut(s) 786
Cfr13I GGNCC 3 cut(s) 460, 855, 1339
Csp6I GTAC 2 cut(s) 186, 1403
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 9 cut(s) 264, 352, 755, 787, 832, 908, 943, 971, 1206
CviQI GTAC 2 cut(s) 186, 1403
DdeI CTNAG 4 cut(s) 207, 629, 1033, 1372
DpnI GATC 7 cut(s) 45, 300, 793, 957, 1056, 1230, 1326
DpnII GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
DraI TTTAAA 1 cut(s) 1140
DrdI GACNNNNNNGTC 1 cut(s) 925
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 3 cut(s) 315, 904, 1237
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1195
EarI CTCTTC 1 cut(s) 1195
EciI GGCGGA 1 cut(s) 380
Ecl136II GAGCTC 3 cut(s) 740, 895, 940
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 3 cut(s) 742, 897, 942
Eco47I GGWCC 3 cut(s) 460, 855, 1339
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 3 cut(s) 740, 895, 940
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 3 cut(s) 740, 895, 940
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 1339
EcoRI GAATTC 2 cut(s) 393, 1090
EcoRII CCWGG 1 cut(s) 599
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 3 cut(s) 742, 897, 942
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 9 cut(s) 267, 355, 758, 790, 835, 911, 946, 974, 1209
FalI AAGNNNNNCTT 3 cut(s) 488, 520, 1389
FaqI GGGAC 1 cut(s) 1352
FatI CATG 9 cut(s) 263, 351, 754, 786, 831, 907, 942, 970, 1205
FauI CCCGC 2 cut(s) 424, 568
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 3 cut(s) 742, 897, 942
FspBI CTAG 6 cut(s) 155, 183, 371, 468, 795, 1170
HaeIII GGCC 6 cut(s) 104, 245, 317, 345, 906, 1239
HapII CCGG 2 cut(s) 555, 1382
Hin1II CATG 9 cut(s) 267, 355, 758, 790, 835, 911, 946, 974, 1209
HindIII AAGCTT 2 cut(s) 497, 1357
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 596, 661, 919
HpaII CCGG 2 cut(s) 555, 1382
HphI GGTGA 3 cut(s) 662, 770, 1058
Hpy166II GTNNAC 4 cut(s) 142, 883, 1065, 1106
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 660, 819, 1036, 1089
Hpy188III TCNNGA 7 cut(s) 41, 787, 795, 1224, 1263, 1283, 1308
Hpy8I GTNNAC 4 cut(s) 142, 883, 1065, 1106
Hpy99I CGWCG 3 cut(s) 140, 149, 893
HpyAV CCTTC 4 cut(s) 115, 556, 1176, 1269
HpyCH4III ACNGT 5 cut(s) 74, 170, 626, 654, 1003
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 92, 123, 142, 221, 542, 694, 988, 1133, 1213
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 242, 572, 691, 694
HpyF3I CTNAG 4 cut(s) 207, 629, 1033, 1372
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 9 cut(s) 267, 355, 758, 790, 835, 911, 946, 974, 1209
Kzo9I GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
LweI GCATC 3 cut(s) 166, 706, 1090
MaeI CTAG 6 cut(s) 155, 183, 371, 468, 795, 1170
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 170, 251, 338, 1184
MalI GATC 7 cut(s) 45, 300, 793, 957, 1056, 1230, 1326
MbiI CCGCTC 2 cut(s) 314, 575
MboI GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
MboII GAAGA 4 cut(s) 280, 1018, 1064, 1182
MflI RGATCY 5 cut(s) 791, 955, 1054, 1228, 1324
MhlI GDGCHC 6 cut(s) 79, 144, 742, 841, 897, 942
MlsI TGGCCA 1 cut(s) 1239
MluCI AATT 6 cut(s) 393, 427, 454, 490, 1090, 1141
MluNI TGGCCA 1 cut(s) 1239
MlyI GAGTC 4 cut(s) 32, 89, 605, 913
MmeI TCCRAC 1 cut(s) 915
Mox20I TGGCCA 1 cut(s) 1239
MroXI GAANNNNTTC 1 cut(s) 1258
MscI TGGCCA 1 cut(s) 1239
MseI TTAA 3 cut(s) 606, 975, 1139
MslI CAYNNNNRTG 4 cut(s) 137, 708, 753, 756
Msp20I TGGCCA 1 cut(s) 1239
MspA1I CMGCKG 2 cut(s) 485, 688
MspI CCGG 2 cut(s) 555, 1382
MspR9I CCNGG 2 cut(s) 555, 601
Mva1269I GAATGC 1 cut(s) 852
MvaI CCWGG 1 cut(s) 601
MwoI GCNNNNNNNGC 5 cut(s) 98, 242, 572, 691, 694
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 113
NdeII GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
NlaIII CATG 9 cut(s) 267, 355, 758, 790, 835, 911, 946, 974, 1209
NlaIV GGNNCC 3 cut(s) 462, 840, 1340
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 3 cut(s) 170, 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 708
PagI TCATGA 1 cut(s) 786
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 809
PctI GAATGC 1 cut(s) 852
PdmI GAANNNNTTC 1 cut(s) 1258
PfeI GAWTC 4 cut(s) 31, 37, 375, 661
PleI GAGTC 4 cut(s) 31, 89, 604, 913
PpsI GAGTC 4 cut(s) 31, 89, 604, 913
PpuMI RGGWCCY 1 cut(s) 1339
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 3 cut(s) 742, 897, 942
Psp5II RGGWCCY 1 cut(s) 1339
Psp6I CCWGG 1 cut(s) 599
PspGI CCWGG 1 cut(s) 599
PspN4I GGNNCC 3 cut(s) 462, 840, 1340
PspPI GGNCC 3 cut(s) 460, 855, 1339
PspPPI RGGWCCY 1 cut(s) 1339
PstI CTGCAG 2 cut(s) 94, 696
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 658, 688, 691
PsuI RGATCY 5 cut(s) 791, 955, 1054, 1228, 1324
PvuII CAGCTG 2 cut(s) 485, 688
RsaI GTAC 2 cut(s) 187, 1404
RsaNI GTAC 2 cut(s) 186, 1403
RseI CAYNNNNRTG 4 cut(s) 137, 708, 753, 756
SacI GAGCTC 3 cut(s) 742, 897, 942
SaqAI TTAA 3 cut(s) 606, 975, 1139
Sau3AI GATC 7 cut(s) 43, 298, 791, 955, 1054, 1228, 1324
Sau96I GGNCC 3 cut(s) 460, 855, 1339
ScaI AGTACT 2 cut(s) 187, 1404
SchI GAGTC 4 cut(s) 32, 89, 605, 913
ScrFI CCNGG 2 cut(s) 555, 601
SduI GDGCHC 6 cut(s) 79, 144, 742, 841, 897, 942
SfaNI GCATC 3 cut(s) 166, 706, 1090
SfcI CTRYAG 3 cut(s) 90, 692, 1023
SinI GGWCC 3 cut(s) 460, 855, 1339
SmiMI CAYNNNNRTG 4 cut(s) 137, 708, 753, 756
Sse9I AATT 6 cut(s) 393, 427, 454, 490, 1090, 1141
SspMI CTAG 6 cut(s) 155, 183, 371, 468, 795, 1170
SstI GAGCTC 3 cut(s) 742, 897, 942
StyD4I CCNGG 2 cut(s) 553, 599
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 5 cut(s) 74, 170, 626, 654, 1003
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 891
TasI AATT 6 cut(s) 393, 427, 454, 490, 1090, 1141
TatI WGTACW 2 cut(s) 185, 1402
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 906
TfiI GAWTC 4 cut(s) 31, 37, 375, 661
Tru1I TTAA 3 cut(s) 606, 975, 1139
Tru9I TTAA 3 cut(s) 606, 975, 1139
TscAI CASTG 5 cut(s) 79, 175, 211, 936, 1018
TseFI GTSAC 3 cut(s) 170, 251, 338
Tsp45I GTSAC 3 cut(s) 170, 251, 338
TspDTI ATGAA 6 cut(s) 44, 290, 772, 924, 1065, 1265
TspGWI ACGGA 2 cut(s) 429, 1172
TspRI CASTG 5 cut(s) 79, 175, 211, 936, 1018
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 3 cut(s) 460, 855, 1339
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 393, 1090, 1141
XbaI TCTAGA 1 cut(s) 794
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 713
XmnI GAANNNNTTC 1 cut(s) 1258
XspI CTAG 6 cut(s) 155, 183, 371, 468, 795, 1170
ZrmI AGTACT 2 cut(s) 187, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.