FvH4_5g17780
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0004135
Physical Location & Seq
Forward (+)
10186400 .. 10191963
5564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17780.t6

Sequence Viewer

Length: 1215 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCACATAAGCCTTCCAAACAGTGCTTCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACAACACCGACGTGCACGACGGCGTCGGCGGTCTAGTCAATTCCCATGGTGACGACGCTACCACTCCTCCACCTCCACTCGCCGCAGACACTGAGCTCTCCCTTGCAAATCCCACAAGTGCTTCCGAGAGTGACAACAACAACAACTCATGGAAGATGATGAATTCGAGTTACTTCTCTAGAGATCAGCAGCAAGCAGAAAAGCACAGCAACATAAGCCACGGCCTTTCCATGCTTGATGTGGCCGAGCTAGGAATGAAACCCATCAAAGGAATTCCAGTCTACAACACCACTCCCGCACCAGCTAATTGCTCCTTCCCGTTTTCTCAGCCTAATTTGGACCCATCTAGGGATATATCTGCAGCTGCTAATAACCCCAAGCTTTGCTACTACCAAACGCCGCCGTATCTATCTCCTGCTGTGCCCTTCAGACCCGGTGGTGCTGCTATGGGAGGGTTTGAGTCGACCAGGTTTAACGGGATAACTATGGAGAGTCTTAGAGTGCCTCAACACCAGTTGCAGTATCTGAATCATCATCATCACCATCAGCAACAGCAGCAGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGAGCTCATCATCATCATCATCATCATGGTGATTTCTCCAGTAATAATGGGTTTATTATGAGATCTAGATTTACACCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGGTGGACCAGCTCCCTCCACGCCCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGAGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTACAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGGGATGAAGATCTTCTTTCCACAACAACGACAACGCATCATCAGAATTCTGCAAATGGCTTACTAAACCAAAGAGGAGGATCAAATGTAGGTTTAAATTCGGAGCAAGATGCCGAACACCCTTCTAGCAATCTGTGGGGTAACTCGTCCAGGTATGACCTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

405

Amino Acids

44.45

Weight (kDa)

6.66

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 282 - 333 2.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 925
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 838
AccI GTMKAC 2 cut(s) 411, 593
AciI CCGC 8 cut(s) 101, 118, 159, 213, 426, 530, 850, 903
AclWI GGATC 1 cut(s) 1132
AcoI YGGCCR 2 cut(s) 372, 904
AcsI RAATTY 4 cut(s) 292, 402, 1090, 1141
AcuI CTGAAG 1 cut(s) 541
AcyI GRCGYC 1 cut(s) 153
AfaI GTAC 1 cut(s) 995
AfiI CCNNNNNNNGG 5 cut(s) 11, 398, 478, 849, 1038
AgsI TTSAA 3 cut(s) 31, 81, 109
AjiI CACGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 596, 1193
AjuI GAANNNNNNNTTGG 2 cut(s) 61, 93
AleI CACNNNNGTG 2 cut(s) 140, 708
Alw21I GWGCWC 5 cut(s) 147, 228, 736, 897, 942
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 143
AlwI GGATC 1 cut(s) 1132
AlwNI CAGNNNCTG 4 cut(s) 98, 221, 655, 691
AoxI GGCC 4 cut(s) 102, 352, 372, 904
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 8 cut(s) 319, 491, 494, 572, 685, 688, 691, 694
ApoI RAATTY 4 cut(s) 292, 402, 1090, 1141
Asp700I GAANNNNTTC 1 cut(s) 1056
AspS9I GGNCC 2 cut(s) 469, 855
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 3 cut(s) 191, 662, 770
AvaII GGWCC 2 cut(s) 469, 855
BaeGI GKGCMC 3 cut(s) 147, 555, 841
BanI GGYRCC 1 cut(s) 838
BanII GRGCYC 4 cut(s) 228, 736, 897, 942
Bbv12I GWGCWC 5 cut(s) 147, 228, 736, 897, 942
BbvI GCAGC 8 cut(s) 331, 481, 503, 559, 678, 697, 700, 706
BccI CCATC 4 cut(s) 401, 481, 681, 1031
BceAI ACGGC 4 cut(s) 166, 367, 517, 872
BciT130I CCWGG 2 cut(s) 598, 1195
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 6 cut(s) 164, 309, 380, 477, 795, 1170
BfmI CTRYAG 4 cut(s) 90, 489, 692, 1023
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 3 cut(s) 791, 955, 1054
Bme1390I CCNGG 3 cut(s) 564, 598, 1195
Bme18I GGWCC 2 cut(s) 469, 855
BmgBI CACGTC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 469, 855
BmiI GGNNCC 2 cut(s) 471, 840
BmrFI CCNGG 3 cut(s) 564, 598, 1195
BmsI GCATC 3 cut(s) 706, 1090, 1144
BpmI CTGGAG 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 564
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 175, 349, 898
BsaXI ACNNNNNCTCC 4 cut(s) 181, 211, 705, 735
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 398, 478, 849, 1038
Bse1I ACTGG 3 cut(s) 407, 643, 768
Bse8I GATNNNNATC 1 cut(s) 1053
BseBI CCWGG 2 cut(s) 598, 1195
BseDI CCNNGG 3 cut(s) 175, 349, 898
BseGI GGATG 2 cut(s) 952, 1054
BseJI GATNNNNATC 1 cut(s) 1053
BseLI CCNNNNNNNGG 5 cut(s) 11, 398, 478, 849, 1038
BseMII CTCAG 3 cut(s) 213, 470, 1047
BseNI ACTGG 3 cut(s) 407, 643, 768
BseRI GAGGAG 2 cut(s) 186, 1134
BseSI GKGCMC 3 cut(s) 147, 555, 841
BseXI GCAGC 8 cut(s) 331, 481, 503, 559, 678, 697, 700, 706
BsgI GTGCAG 1 cut(s) 142
BshFI GGCC 4 cut(s) 104, 354, 374, 906
BshNI GGYRCC 1 cut(s) 838
BsiHKAI GWGCWC 5 cut(s) 147, 228, 736, 897, 942
BsiSI CCGG 1 cut(s) 564
BslI CCNNNNNNNGG 5 cut(s) 11, 398, 478, 849, 1038
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 852
BsnI GGCC 4 cut(s) 104, 354, 374, 906
Bsp1286I GDGCHC 7 cut(s) 147, 228, 555, 736, 841, 897, 942
Bsp1407I TGTACA 1 cut(s) 993
Bsp143I GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 8 cut(s) 101, 118, 159, 213, 426, 530, 850, 903
BspANI GGCC 4 cut(s) 104, 354, 374, 906
BspCNI CTCAG 3 cut(s) 214, 469, 1046
BspLI GGNNCC 2 cut(s) 471, 840
BspMAI CTGCAG 3 cut(s) 94, 493, 696
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 1132
BspT107I GGYRCC 1 cut(s) 838
BsrGI TGTACA 1 cut(s) 993
BsrI ACTGG 3 cut(s) 407, 643, 768
BssECI CCNNGG 3 cut(s) 175, 349, 898
BssMI GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 175, 898
Bst2UI CCWGG 2 cut(s) 598, 1195
Bst4CI ACNGT 2 cut(s) 74, 1003
BstACI GRCGYC 1 cut(s) 153
BstAPI GCANNNNNTGC 2 cut(s) 98, 691
BstAUI TGTACA 1 cut(s) 993
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 222, 456, 626, 1033
BstDSI CCRYGG 2 cut(s) 175, 349
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 2 cut(s) 952, 1054
BstKTI GATC 6 cut(s) 46, 316, 794, 958, 1057, 1127
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
BstMWI GCNNNNNNNGC 5 cut(s) 98, 345, 685, 691, 694
BstNI CCWGG 2 cut(s) 598, 1195
BstSCI CCNGG 3 cut(s) 562, 596, 1193
BstSFI CTRYAG 4 cut(s) 90, 489, 692, 1023
BstSLI GKGCMC 3 cut(s) 147, 555, 841
BstV1I GCAGC 8 cut(s) 331, 481, 503, 559, 678, 697, 700, 706
BstX2I RGATCY 3 cut(s) 791, 955, 1054
BstYI RGATCY 3 cut(s) 791, 955, 1054
BsuRI GGCC 4 cut(s) 104, 354, 374, 906
BtgI CCRYGG 2 cut(s) 175, 349
BtrI CACGTC 1 cut(s) 142
BtsCI GGATG 2 cut(s) 952, 1054
BtsIMutI CAGTG 4 cut(s) 79, 219, 936, 1011
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 4 cut(s) 98, 221, 655, 691
Cfr13I GGNCC 2 cut(s) 469, 855
CseI GACGC 2 cut(s) 142, 194
CsiI ACCWGGT 1 cut(s) 596
Csp6I GTAC 1 cut(s) 994
CviAII CATG 8 cut(s) 176, 279, 361, 755, 832, 908, 943, 971
CviQI GTAC 1 cut(s) 994
DdeI CTNAG 4 cut(s) 222, 456, 626, 1033
DpnI GATC 6 cut(s) 45, 315, 793, 957, 1056, 1126
DpnII GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
DraI TTTAAA 1 cut(s) 1140
DrdI GACNNNNNNGTC 1 cut(s) 925
DseDI GACNNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 2 cut(s) 372, 904
Ecl136II GAGCTC 4 cut(s) 226, 734, 895, 940
Eco130I CCWWGG 2 cut(s) 175, 898
Eco24I GRGCYC 4 cut(s) 228, 736, 897, 942
Eco47I GGWCC 2 cut(s) 469, 855
Eco53kI GAGCTC 4 cut(s) 226, 734, 895, 940
Eco57I CTGAAG 1 cut(s) 541
EcoICRI GAGCTC 4 cut(s) 226, 734, 895, 940
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRI GAATTC 3 cut(s) 292, 402, 1090
EcoRII CCWGG 2 cut(s) 596, 1193
EcoT14I CCWWGG 2 cut(s) 175, 898
EcoT38I GRGCYC 4 cut(s) 228, 736, 897, 942
ErhI CCWWGG 2 cut(s) 175, 898
FaeI CATG 8 cut(s) 179, 282, 364, 758, 835, 911, 946, 974
FalI AAGNNNNNCTT 2 cut(s) 1044, 1076
FatI CATG 8 cut(s) 175, 278, 360, 754, 831, 907, 942, 970
FauI CCCGC 1 cut(s) 433
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 2 cut(s) 411, 593
FokI GGATG 2 cut(s) 959, 1061
FriOI GRGCYC 4 cut(s) 228, 736, 897, 942
FspBI CTAG 6 cut(s) 164, 309, 380, 477, 795, 1170
GsuI CTGGAG 1 cut(s) 751
HaeIII GGCC 4 cut(s) 104, 354, 374, 906
HapII CCGG 1 cut(s) 564
HgaI GACGC 2 cut(s) 142, 194
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 8 cut(s) 179, 282, 364, 758, 835, 911, 946, 974
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 590, 622, 658, 919
HpaII CCGG 1 cut(s) 564
HphI GGTGA 3 cut(s) 191, 662, 770
Hpy166II GTNNAC 5 cut(s) 145, 412, 594, 855, 883
Hpy188I TCNGA 8 cut(s) 36, 256, 560, 657, 819, 1036, 1089, 1147
Hpy188III TCNNGA 3 cut(s) 41, 309, 795
Hpy8I GTNNAC 5 cut(s) 145, 412, 594, 855, 883
Hpy99I CGWCG 5 cut(s) 143, 152, 158, 188, 893
HpyAV CCTTC 6 cut(s) 74, 115, 454, 565, 1176, 1214
HpyCH4III ACNGT 2 cut(s) 74, 1003
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 9 cut(s) 92, 123, 145, 236, 491, 649, 694, 988, 1097
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 345, 685, 691, 694
HpyF3I CTNAG 4 cut(s) 222, 456, 626, 1033
HpySE526I ACGT 1 cut(s) 141
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 8 cut(s) 179, 282, 364, 758, 835, 911, 946, 974
Kzo9I GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
LmnI GCTCC 6 cut(s) 446, 731, 866, 900, 937, 1147
Lsp1109I GCAGC 8 cut(s) 331, 481, 503, 559, 678, 697, 700, 706
LweI GCATC 3 cut(s) 706, 1090, 1144
MabI ACCWGGT 1 cut(s) 596
MaeI CTAG 6 cut(s) 164, 309, 380, 477, 795, 1170
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 4 cut(s) 179, 260, 299, 1184
MalI GATC 6 cut(s) 45, 315, 793, 957, 1056, 1126
MboI GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
MboII GAAGA 4 cut(s) 295, 1018, 1049, 1064
MflI RGATCY 3 cut(s) 791, 955, 1054
MhlI GDGCHC 7 cut(s) 147, 228, 555, 736, 841, 897, 942
MluCI AATT 7 cut(s) 169, 292, 402, 436, 463, 1090, 1141
MlyI GAGTC 5 cut(s) 32, 89, 599, 631, 913
MmeI TCCRAC 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 3 cut(s) 603, 975, 1139
MslI CAYNNNNRTG 4 cut(s) 140, 708, 753, 756
MspA1I CMGCKG 2 cut(s) 494, 691
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 3 cut(s) 564, 598, 1195
Mva1269I GAATGC 1 cut(s) 852
MvaI CCWGG 2 cut(s) 598, 1195
MwoI GCNNNNNNNGC 5 cut(s) 98, 345, 685, 691, 694
NciI CCSGG 1 cut(s) 564
NcoI CCATGG 1 cut(s) 175
NdeI CATATG 1 cut(s) 113
NdeII GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
NlaIII CATG 8 cut(s) 179, 282, 364, 758, 835, 911, 946, 974
NlaIV GGNNCC 2 cut(s) 471, 840
NmeAIII GCCGAG 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 179, 260
OliI CACNNNNGTG 2 cut(s) 140, 708
PctI GAATGC 1 cut(s) 852
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 3 cut(s) 31, 37, 658
PflFI GACNNNGTC 1 cut(s) 152
PleI GAGTC 5 cut(s) 31, 89, 598, 630, 913
PpsI GAGTC 5 cut(s) 31, 89, 598, 630, 913
Psp124BI GAGCTC 4 cut(s) 228, 736, 897, 942
Psp6I CCWGG 2 cut(s) 596, 1193
PspGI CCWGG 2 cut(s) 596, 1193
PspN4I GGNNCC 2 cut(s) 471, 840
PspPI GGNCC 2 cut(s) 469, 855
PstI CTGCAG 3 cut(s) 94, 493, 696
PstNI CAGNNNCTG 4 cut(s) 98, 221, 655, 691
PsuI RGATCY 3 cut(s) 791, 955, 1054
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 2 cut(s) 494, 691
RsaI GTAC 1 cut(s) 995
RsaNI GTAC 1 cut(s) 994
RseI CAYNNNNRTG 4 cut(s) 140, 708, 753, 756
SacI GAGCTC 4 cut(s) 228, 736, 897, 942
SalI GTCGAC 1 cut(s) 592
SaqAI TTAA 3 cut(s) 603, 975, 1139
Sau3AI GATC 6 cut(s) 43, 313, 791, 955, 1054, 1124
Sau96I GGNCC 2 cut(s) 469, 855
SchI GAGTC 5 cut(s) 32, 89, 599, 631, 913
ScrFI CCNGG 3 cut(s) 564, 598, 1195
SduI GDGCHC 7 cut(s) 147, 228, 555, 736, 841, 897, 942
SexAI ACCWGGT 1 cut(s) 596
SfaNI GCATC 3 cut(s) 706, 1090, 1144
SfcI CTRYAG 4 cut(s) 90, 489, 692, 1023
SinI GGWCC 2 cut(s) 469, 855
SmiMI CAYNNNNRTG 4 cut(s) 140, 708, 753, 756
Sse9I AATT 7 cut(s) 169, 292, 402, 436, 463, 1090, 1141
SsiI CCGC 8 cut(s) 101, 118, 159, 213, 426, 530, 850, 903
SspMI CTAG 6 cut(s) 164, 309, 380, 477, 795, 1170
SstI GAGCTC 4 cut(s) 228, 736, 897, 942
StyD4I CCNGG 3 cut(s) 562, 596, 1193
StyI CCWWGG 2 cut(s) 175, 898
TaaI ACNGT 2 cut(s) 74, 1003
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 296, 593, 891
TasI AATT 7 cut(s) 169, 292, 402, 436, 463, 1090, 1141
TatI WGTACW 1 cut(s) 993
TauI GCSGC 4 cut(s) 104, 215, 532, 906
TfiI GAWTC 3 cut(s) 31, 37, 658
Tru1I TTAA 3 cut(s) 603, 975, 1139
Tru9I TTAA 3 cut(s) 603, 975, 1139
TscAI CASTG 4 cut(s) 79, 226, 936, 1018
TseFI GTSAC 2 cut(s) 179, 260
TseI GCWGC 8 cut(s) 319, 491, 494, 572, 685, 688, 691, 694
Tsp45I GTSAC 2 cut(s) 179, 260
TspDTI ATGAA 5 cut(s) 305, 401, 924, 1065, 1196
TspRI CASTG 4 cut(s) 79, 226, 936, 1018
Tth111I GACNNNGTC 1 cut(s) 152
VneI GTGCAC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 469, 855
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 4 cut(s) 292, 402, 1090, 1141
XbaI TCTAGA 2 cut(s) 308, 794
XcmI CCANNNNNNNNNTGG 2 cut(s) 367, 713
XmiI GTMKAC 2 cut(s) 411, 593
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 6 cut(s) 164, 309, 380, 477, 795, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.