Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004135

Physical Location & Seq

Genomic Coordinates Forward (+)

17991426 .. 17996247

Gene Structure 4822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G238100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCCTCATGAAAAAGGGATTTCAGAGGCTGCAGGCAGCTGCCGCTTATCTTTGAATCCGATTCCTGATCTTTCACTGCACATAAGCCCTCCAAACGCAAACACAAACAAAAACGCAAACAGTGCTCCCTCCTCCATTTGCACTGACCAAAGCACAAACGAAGCACCTAATCATCACGAATCCGGCAGCTGCTTCGACATATGGTGCAGAGACATGGACGGCGATGGCCTGATTAACAAATCGCACAGTGACAGTTGTGTTAGAAGAGGCAGCTGCAGTCTAGTCGCAGCAGCTGATCATGACACTGAGCTCTCTCTTGCAAATCCCACAGCTTCGGAGGCTGAGAGCCGCTGGAGAAAAAACTATTTCAACACCCGGGGAGGCGGCGGAGAGGGTCGTCGTCATCATCTTCATCACCATGAAGAAGAAGAAGAAGCAAAGACCAGTATAAGTCATGGGTTTTCGATGCTGGATGTAGCGGAGAGGCTCAAACCCATCAAAGGAATTCCAGTTTACAACTGTCCTCCTACTAATTGCTCCTTTCCTCCAAACTTGGAGGACCAATCTCACTACTCAAGAGTGGACCGAGATCAGAGGGATGATTTTGATTCTAACAAGTTGCGCTTGTATCTGTCTAATTCCTTGAGGCCTGCTGCACCGGCTGCAAATTCATGTAGTGGTATGGGAATGGGAATGGGAATGGGCTTTGAATCCGCCATGTCCCGGACGTTTAACGGGATGACCATGGACAGTCTAAGTCAACGACAACACTACTTTCCGTCGTATAACTTGAATCATTTGCAGCAGCAGCAGCAGCAGCAATGCAGTGTTGGTGGTGTTAGTGGAGGTGCAAATTACAGTTATAATTATAATTCGGATTTGCCCTCTAATGGATTCATCATGAGATCGAGATTTACGCCGACTAAGCTATCTCAGAATATCAACAAGAGGAACATGAGGGCGCCAAGAATGCGCTGGACTACTTCCCTCCATGCCCGTTTTGTTCACGCTGTCGAGCTCCTTGGCGGCCATGAAAGGGCTACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAGGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTACAGAACTGTAAAGAACACTGACAAACCTCTAGGTTCCTCAGATGGATCTGGTGATGAAGATCTTTTGTCCACAACAACAACACATCATCATAATTCAAGTGCCTTACTTAACCAAAGAGGAGCCTCAAATTTAGAGCACGATATGGAACACCACCACCACCCTTCTTCTAACAATCTGTGGGGCAATTCTTCCAGGTATGATCTTCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

444

Amino Acids

49.18

Weight (kDa)

6.65

Isoelectric Point (pI)

53.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16560
fragaria_vesca	FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780
malus_domestica	MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1
prunus_persica	Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1
pyrus_communis	pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200
rosa_chinensis	RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811
rosa_laevigata	RLG00000005502
rosa_multiflora	Rmu_sc0006214.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275540
rosa_rugosa	Rorug06G0409500 Rorug06G0409500 Rorug06G0409500
rosa_samantha	Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400
rosa_wichuraiana	Rw7G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	864, 870
AccB1I	GGYRCC	1 cut(s)	961
AciI	CCGC	7 cut(s)	43, 349, 384, 387, 479, 714, 1026
AclWI	GGATC	2 cut(s)	1086, 1171
AcoI	YGGCCR	1 cut(s)	1027
AcsI	RAATTY	3 cut(s)	504, 667, 1246
AcyI	GRCGYC	1 cut(s)	962
AfaI	GTAC	1 cut(s)	1118
AfiI	CCNNNNNNNGG	4 cut(s)	500, 723, 890, 1036
AgsI	TTSAA	5 cut(s)	55, 370, 710, 793, 1215
AjnI	CCWGG	1 cut(s)	1310
AluBI	AGCT	9 cut(s)	39, 189, 273, 293, 310, 332, 928, 1018, 1063
AluI	AGCT	9 cut(s)	39, 189, 273, 293, 310, 332, 928, 1018, 1063
Alw21I	GWGCWC	5 cut(s)	127, 312, 1020, 1065, 1257
Alw26I	GTCTC	1 cut(s)	204
AlwI	GGATC	2 cut(s)	1086, 1171
AlwNI	CAGNNNCTG	2 cut(s)	29, 293
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	3 cut(s)	226, 647, 1027
ApoI	RAATTY	3 cut(s)	504, 667, 1246
AspLEI	GCGC	3 cut(s)	624, 964, 975
AspS9I	GGNCC	2 cut(s)	559, 583
AsuC2I	CCSGG	3 cut(s)	376, 377, 724
AsuHPI	GGTGA	2 cut(s)	407, 1181
AvaI	CYCGRG	1 cut(s)	375
AvaII	GGWCC	2 cut(s)	559, 583
BanI	GGYRCC	1 cut(s)	961
BanII	GRGCYC	3 cut(s)	312, 1020, 1065
Bbv12I	GWGCWC	5 cut(s)	127, 312, 1020, 1065, 1257
BccI	CCATC	3 cut(s)	218, 503, 1154
BceAI	ACGGC	1 cut(s)	235
BcgI	CGANNNNNNTGC	4 cut(s)	175, 209, 265, 299
BciT130I	CCWGG	1 cut(s)	1312
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	3 cut(s)	376, 377, 724
BcoDI	GTCTC	1 cut(s)	204
BfaI	CTAG	2 cut(s)	281, 1148
BfmI	CTRYAG	2 cut(s)	30, 274
BfoI	RGCGCY	1 cut(s)	965
BglII	AGATCT	1 cut(s)	1177
Bme1390I	CCNGG	4 cut(s)	376, 377, 724, 1312
Bme18I	GGWCC	2 cut(s)	559, 583
BmeT110I	CYCGRG	1 cut(s)	375
BmgT120I	GGNCC	2 cut(s)	559, 583
BmiI	GGNNCC	3 cut(s)	963, 1153, 1240
BmrFI	CCNGG	4 cut(s)	376, 377, 724, 1312
BmsI	GCATC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	373
BpuEI	CTTGAG	2 cut(s)	559, 664
BpuMI	CCSGG	3 cut(s)	376, 377, 724
BsaBI	GATNNNNATC	1 cut(s)	1176
BsaHI	GRCGYC	1 cut(s)	962
BsaJI	CCNNGG	4 cut(s)	375, 376, 744, 1021
Bsc4I	CCNNNNNNNGG	4 cut(s)	500, 723, 890, 1036
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	444, 509
Bse3DI	GCAATG	1 cut(s)	827
Bse8I	GATNNNNATC	1 cut(s)	1176
BseBI	CCWGG	1 cut(s)	1312
BseDI	CCNNGG	4 cut(s)	375, 376, 744, 1021
BseGI	GGATG	4 cut(s)	478, 604, 744, 1075
BseJI	GATNNNNATC	1 cut(s)	1176
BseLI	CCNNNNNNNGG	4 cut(s)	500, 723, 890, 1036
BseMI	GCAATG	1 cut(s)	827
BseMII	CTCAG	4 cut(s)	297, 333, 947, 1170
BseNI	ACTGG	2 cut(s)	444, 509
BseRI	GAGGAG	2 cut(s)	121, 1251
BsgI	GTGCAG	3 cut(s)	62, 226, 639
BshFI	GGCC	3 cut(s)	228, 649, 1029
BshNI	GGYRCC	1 cut(s)	961
BsiHKAI	GWGCWC	5 cut(s)	127, 312, 1020, 1065, 1257
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	4 cut(s)	183, 376, 659, 724
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	4 cut(s)	500, 723, 890, 1036
BsmAI	GTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	706
BsmI	GAATGC	1 cut(s)	975
BsnI	GGCC	3 cut(s)	228, 649, 1029
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	5 cut(s)	127, 312, 1020, 1065, 1257
Bsp1407I	TGTACA	1 cut(s)	1116
Bsp143I	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	7 cut(s)	43, 349, 384, 387, 479, 714, 1026
BspANI	GGCC	3 cut(s)	228, 649, 1029
BspCNI	CTCAG	4 cut(s)	298, 334, 946, 1169
BspHI	TCATGA	3 cut(s)	7, 298, 900
BspLI	GGNNCC	3 cut(s)	963, 1153, 1240
BspMAI	CTGCAG	2 cut(s)	34, 278
BspPI	GGATC	2 cut(s)	1086, 1171
BspT107I	GGYRCC	1 cut(s)	961
BsrDI	GCAATG	1 cut(s)	827
BsrFI	RCCGGY	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	1116
BsrI	ACTGG	2 cut(s)	444, 509
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	4 cut(s)	375, 376, 744, 1021
BssMI	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
BssNI	GRCGYC	1 cut(s)	962
BssT1I	CCWWGG	2 cut(s)	744, 1021
Bst2UI	CCWGG	1 cut(s)	1312
Bst4CI	ACNGT	7 cut(s)	122, 248, 254, 521, 752, 860, 1126
Bst6I	CTCTTC	1 cut(s)	259
BstACI	GRCGYC	1 cut(s)	962
BstAPI	GCANNNNNTGC	2 cut(s)	122, 662
BstAUI	TGTACA	1 cut(s)	1116
BstC8I	GCNNGC	2 cut(s)	34, 651
BstDEI	CTNAG	6 cut(s)	306, 342, 755, 924, 933, 1156
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	4 cut(s)	478, 604, 744, 1075
BstH2I	RGCGCY	1 cut(s)	965
BstHHI	GCGC	3 cut(s)	624, 964, 975
BstKTI	GATC	8 cut(s)	70, 298, 592, 908, 1081, 1166, 1180, 1321
BstMAI	GTCTC	1 cut(s)	204
BstMBI	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
BstNI	CCWGG	1 cut(s)	1312
BstSCI	CCNGG	4 cut(s)	374, 375, 722, 1310
BstSFI	CTRYAG	2 cut(s)	30, 274
BstX2I	RGATCY	3 cut(s)	1078, 1163, 1177
BstYI	RGATCY	3 cut(s)	1078, 1163, 1177
BsuRI	GGCC	3 cut(s)	228, 649, 1029
BtgI	CCRYGG	1 cut(s)	744
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	4 cut(s)	478, 604, 744, 1075
BtsI	GCAGTG	2 cut(s)	74, 832
BtsIMutI	CAGTG	8 cut(s)	74, 127, 141, 253, 303, 832, 1059, 1134
Cac8I	GCNNGC	2 cut(s)	34, 651
CaiI	CAGNNNCTG	2 cut(s)	29, 293
CciI	TCATGA	3 cut(s)	7, 298, 900
CfoI	GCGC	3 cut(s)	624, 964, 975
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	559, 583
Cfr9I	CCCGGG	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	1117
CviQI	GTAC	1 cut(s)	1117
DdeI	CTNAG	6 cut(s)	306, 342, 755, 924, 933, 1156
DinI	GGCGCC	1 cut(s)	963
DpnI	GATC	8 cut(s)	69, 297, 591, 907, 1080, 1165, 1179, 1320
DpnII	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
EaeI	YGGCCR	1 cut(s)	1027
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EciI	GGCGGA	2 cut(s)	402, 703
Ecl136II	GAGCTC	3 cut(s)	310, 1018, 1063
Eco130I	CCWWGG	2 cut(s)	744, 1021
Eco147I	AGGCCT	1 cut(s)	649
Eco24I	GRGCYC	3 cut(s)	312, 1020, 1065
Eco47I	GGWCC	2 cut(s)	559, 583
Eco53kI	GAGCTC	3 cut(s)	310, 1018, 1063
Eco88I	CYCGRG	1 cut(s)	375
EcoICRI	GAGCTC	3 cut(s)	310, 1018, 1063
EcoRI	GAATTC	1 cut(s)	504
EcoRII	CCWGG	1 cut(s)	1310
EcoT14I	CCWWGG	2 cut(s)	744, 1021
EcoT38I	GRGCYC	3 cut(s)	312, 1020, 1065
EgeI	GGCGCC	1 cut(s)	963
EheI	GGCGCC	1 cut(s)	963
ErhI	CCWWGG	2 cut(s)	744, 1021
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FaqI	GGGAC	1 cut(s)	706
FauNDI	CATATG	1 cut(s)	200
FbaI	TGATCA	1 cut(s)	295
FokI	GGATG	4 cut(s)	485, 611, 751, 1082
FriOI	GRGCYC	3 cut(s)	312, 1020, 1065
FspBI	CTAG	2 cut(s)	281, 1148
GlaI	GCGC	3 cut(s)	623, 963, 974
GsuI	CTGGAG	1 cut(s)	373
HaeII	RGCGCY	1 cut(s)	965
HaeIII	GGCC	3 cut(s)	228, 649, 1029
HapII	CCGG	4 cut(s)	183, 376, 659, 724
HhaI	GCGC	3 cut(s)	624, 964, 975
Hin1I	GRCGYC	1 cut(s)	962
Hin6I	GCGC	3 cut(s)	622, 962, 973
HinP1I	GCGC	3 cut(s)	622, 962, 973
HincII	GTYRAC	1 cut(s)	761
HindII	GTYRAC	1 cut(s)	761
HinfI	GANTC	7 cut(s)	55, 61, 179, 608, 710, 793, 894
HpaII	CCGG	4 cut(s)	183, 376, 659, 724
HphI	GGTGA	2 cut(s)	407, 1181
Hpy166II	GTNNAC	5 cut(s)	514, 583, 761, 1006, 1188
Hpy188I	TCNGA	7 cut(s)	25, 60, 337, 594, 877, 936, 1159
Hpy188III	TCNNGA	7 cut(s)	8, 65, 176, 299, 576, 901, 909
Hpy8I	GTNNAC	5 cut(s)	514, 583, 761, 1006, 1188
Hpy99I	CGWCG	2 cut(s)	402, 784
HpyAV	CCTTC	1 cut(s)	1290
HpyCH4III	ACNGT	7 cut(s)	122, 248, 254, 521, 752, 860, 1126
HpyCH4IV	ACGT	1 cut(s)	728
HpyF3I	CTNAG	6 cut(s)	306, 342, 755, 924, 933, 1156
HpySE526I	ACGT	1 cut(s)	728
Hsp92I	GRCGYC	1 cut(s)	962
HspAI	GCGC	3 cut(s)	622, 962, 973
KasI	GGCGCC	1 cut(s)	961
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
LmnI	GCTCC	5 cut(s)	130, 542, 1023, 1060, 1238
LweI	GCATC	1 cut(s)	456
MaeI	CTAG	2 cut(s)	281, 1148
MaeII	ACGT	1 cut(s)	728
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	8 cut(s)	69, 297, 591, 907, 1080, 1165, 1179, 1320
MboI	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
MflI	RGATCY	3 cut(s)	1078, 1163, 1177
MhlI	GDGCHC	5 cut(s)	127, 312, 1020, 1065, 1257
Mly113I	GGCGCC	1 cut(s)	962
MmeI	TCCRAC	1 cut(s)	1038
MseI	TTAA	4 cut(s)	234, 732, 1098, 1227
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	5 cut(s)	39, 189, 273, 293, 351
MspI	CCGG	4 cut(s)	183, 376, 659, 724
MspR9I	CCNGG	4 cut(s)	376, 377, 724, 1312
Mva1269I	GAATGC	1 cut(s)	975
MvaI	CCWGG	1 cut(s)	1312
NarI	GGCGCC	1 cut(s)	962
NciI	CCSGG	3 cut(s)	376, 377, 724
NcoI	CCATGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	200
NdeII	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
NlaIV	GGNNCC	3 cut(s)	963, 1153, 1240
NmuCI	GTSAC	1 cut(s)	248
PagI	TCATGA	3 cut(s)	7, 298, 900
PceI	AGGCCT	1 cut(s)	649
PctI	GAATGC	1 cut(s)	975
PfeI	GAWTC	7 cut(s)	55, 61, 179, 608, 710, 793, 894
PfoI	TCCNGGA	1 cut(s)	722
PluTI	GGCGCC	1 cut(s)	965
PsiI	TTATAA	2 cut(s)	864, 870
Psp124BI	GAGCTC	3 cut(s)	312, 1020, 1065
Psp6I	CCWGG	1 cut(s)	1310
PspGI	CCWGG	1 cut(s)	1310
PspN4I	GGNNCC	3 cut(s)	963, 1153, 1240
PspPI	GGNCC	2 cut(s)	559, 583
PstI	CTGCAG	2 cut(s)	34, 278
PstNI	CAGNNNCTG	2 cut(s)	29, 293
PsuI	RGATCY	3 cut(s)	1078, 1163, 1177
PvuII	CAGCTG	4 cut(s)	39, 189, 273, 293
RsaI	GTAC	1 cut(s)	1118
RsaNI	GTAC	1 cut(s)	1117
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	3 cut(s)	312, 1020, 1065
SaqAI	TTAA	4 cut(s)	234, 732, 1098, 1227
Sau3AI	GATC	8 cut(s)	67, 295, 589, 905, 1078, 1163, 1177, 1318
Sau96I	GGNCC	2 cut(s)	559, 583
ScrFI	CCNGG	4 cut(s)	376, 377, 724, 1312
SduI	GDGCHC	5 cut(s)	127, 312, 1020, 1065, 1257
SfaNI	GCATC	1 cut(s)	456
SfcI	CTRYAG	2 cut(s)	30, 274
SfoI	GGCGCC	1 cut(s)	963
SinI	GGWCC	2 cut(s)	559, 583
SmaI	CCCGGG	1 cut(s)	377
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	574, 643
SmoI	CTYRAG	2 cut(s)	574, 643
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	7 cut(s)	43, 349, 384, 387, 479, 714, 1026
SspDI	GGCGCC	1 cut(s)	961
SspMI	CTAG	2 cut(s)	281, 1148
SstI	GAGCTC	3 cut(s)	312, 1020, 1065
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	4 cut(s)	374, 375, 722, 1310
StyI	CCWWGG	2 cut(s)	744, 1021
TaaI	ACNGT	7 cut(s)	122, 248, 254, 521, 752, 860, 1126
TaiI	ACGT	1 cut(s)	731
TaqI	TCGA	4 cut(s)	195, 464, 908, 1014
TaqII	GACCGA	1 cut(s)	600
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	4 cut(s)	45, 351, 387, 1029
TfiI	GAWTC	7 cut(s)	55, 61, 179, 608, 710, 793, 894
Tru1I	TTAA	4 cut(s)	234, 732, 1098, 1227
Tru9I	TTAA	4 cut(s)	234, 732, 1098, 1227
TscAI	CASTG	8 cut(s)	81, 127, 148, 253, 310, 832, 1059, 1141
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	8 cut(s)	24, 401, 435, 660, 886, 1047, 1188, 1313
TspGWI	ACGGA	1 cut(s)	768
TspMI	CCCGGG	1 cut(s)	375
TspRI	CASTG	8 cut(s)	81, 127, 148, 253, 310, 832, 1059, 1141
VpaK11BI	GGWCC	2 cut(s)	559, 583
XapI	RAATTY	3 cut(s)	504, 667, 1246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	972
XmaI	CCCGGG	1 cut(s)	375
XspI	CTAG	2 cut(s)	281, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.