Rh7AG009300
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004135
Physical Location & Seq
Reverse (-)
640650 .. 646124
5475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG009300.1

Sequence Viewer

Length: 1068 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTAAAATCTTACAGTGGCGATGCTGCTACTACTCCACTCGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACTAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCAGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGATCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGCTGCTGCTGCTATGGGAGCAGGAGTAGGAGGAGGGTTTGAGTCCCGGTTTAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGGTCATCATCATCATCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGGTAATTCGTATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

355

Amino Acids

38.77

Weight (kDa)

8.54

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 287 - 338 2.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 940
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 853
AciI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 2 cut(s) 315, 919
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 11, 389, 928
AgsI TTSAA 2 cut(s) 31, 109
AhlI ACTAGT 1 cut(s) 230
AjiI CACGTC 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 711
Alw21I GWGCWC 4 cut(s) 79, 144, 912, 957
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
AoxI GGCC 5 cut(s) 102, 243, 315, 343, 919
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 870
AsuC2I CCSGG 2 cut(s) 555, 604
AsuHPI GGTGA 2 cut(s) 665, 785
AvaII GGWCC 1 cut(s) 870
AxyI CCTNAGG 1 cut(s) 1048
BaeGI GKGCMC 2 cut(s) 144, 856
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 2 cut(s) 912, 957
Bbv12I GWGCWC 4 cut(s) 79, 144, 912, 957
BccI CCATC 3 cut(s) 392, 684, 861
BceAI ACGGC 4 cut(s) 163, 358, 508, 887
BcnI CCSGG 2 cut(s) 555, 604
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 5 cut(s) 155, 231, 371, 468, 810
BfmI CTRYAG 3 cut(s) 90, 695, 1038
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 2 cut(s) 806, 970
Bme1390I CCNGG 2 cut(s) 555, 604
Bme18I GGWCC 1 cut(s) 870
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 870
BmiI GGNNCC 2 cut(s) 462, 855
BmrFI CCNGG 2 cut(s) 555, 604
BmsI GCATC 2 cut(s) 166, 709
BoxI GACNNNNGTC 1 cut(s) 150
BpuMI CCSGG 2 cut(s) 555, 604
BsaJI CCNNGG 1 cut(s) 913
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 708, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 389, 928
Bse1I ACTGG 1 cut(s) 398
Bse21I CCTNAGG 1 cut(s) 1048
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 1 cut(s) 967
BseLI CCNNNNNNNGG 3 cut(s) 11, 389, 928
BseMII CTCAG 2 cut(s) 198, 1062
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 603
BseSI GKGCMC 2 cut(s) 144, 856
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 5 cut(s) 104, 245, 317, 345, 921
BshNI GGYRCC 1 cut(s) 853
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 4 cut(s) 79, 144, 912, 957
BsiSI CCGG 2 cut(s) 555, 604
BslFI GGGAC 1 cut(s) 586
BslI CCNNNNNNNGG 3 cut(s) 11, 389, 928
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 5 cut(s) 104, 245, 317, 345, 921
Bsp1286I GDGCHC 5 cut(s) 79, 144, 856, 912, 957
Bsp143I GATC 5 cut(s) 43, 298, 460, 806, 970
BspACI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
BspANI GGCC 5 cut(s) 104, 245, 317, 345, 921
BspCNI CTCAG 2 cut(s) 199, 1061
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 2 cut(s) 462, 855
BspMAI CTGCAG 2 cut(s) 94, 699
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 853
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 5 cut(s) 43, 298, 460, 806, 970
BssT1I CCWWGG 1 cut(s) 913
Bst4CI ACNGT 5 cut(s) 74, 170, 629, 657, 1018
BstAPI GCANNNNNTGC 2 cut(s) 98, 694
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 207, 632, 1048
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 967
BstKTI GATC 5 cut(s) 46, 301, 463, 809, 973
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 5 cut(s) 43, 298, 460, 806, 970
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 553, 602
BstSFI CTRYAG 3 cut(s) 90, 695, 1038
BstSLI GKGCMC 2 cut(s) 144, 856
BstX2I RGATCY 3 cut(s) 460, 806, 970
BstYI RGATCY 3 cut(s) 460, 806, 970
BstZI CGGCCG 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 1048
BsuRI GGCC 5 cut(s) 104, 245, 317, 345, 921
BtgZI GCGATG 2 cut(s) 189, 880
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 967
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 951, 1026
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
CciI TCATGA 1 cut(s) 801
Cfr13I GGNCC 1 cut(s) 870
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 8 cut(s) 264, 352, 770, 802, 847, 923, 958, 986
DdeI CTNAG 3 cut(s) 207, 632, 1048
DpnI GATC 5 cut(s) 45, 300, 462, 808, 972
DpnII GATC 5 cut(s) 43, 298, 460, 806, 970
DrdI GACNNNNNNGTC 1 cut(s) 940
DseDI GACNNNNNNGTC 1 cut(s) 940
EaeI YGGCCR 2 cut(s) 315, 919
EagI CGGCCG 1 cut(s) 315
Ecl136II GAGCTC 2 cut(s) 910, 955
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 913
Eco24I GRGCYC 2 cut(s) 912, 957
Eco47I GGWCC 1 cut(s) 870
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 910, 955
Eco57I CTGAAG 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 1048
EcoICRI GAGCTC 2 cut(s) 910, 955
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 913
EcoT38I GRGCYC 2 cut(s) 912, 957
ErhI CCWWGG 1 cut(s) 913
FaeI CATG 8 cut(s) 267, 355, 773, 805, 850, 926, 961, 989
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FaqI GGGAC 1 cut(s) 586
FatI CATG 8 cut(s) 263, 351, 769, 801, 846, 922, 957, 985
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 2 cut(s) 912, 957
FspBI CTAG 5 cut(s) 155, 231, 371, 468, 810
HaeIII GGCC 5 cut(s) 104, 245, 317, 345, 921
HapII CCGG 2 cut(s) 555, 604
Hin1II CATG 8 cut(s) 267, 355, 773, 805, 850, 926, 961, 989
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 599, 664, 934
HpaII CCGG 2 cut(s) 555, 604
HphI GGTGA 2 cut(s) 665, 785
Hpy166II GTNNAC 2 cut(s) 142, 898
Hpy188I TCNGA 5 cut(s) 36, 241, 551, 663, 834
Hpy188III TCNNGA 3 cut(s) 41, 802, 810
Hpy8I GTNNAC 2 cut(s) 142, 898
Hpy99I CGWCG 3 cut(s) 140, 149, 908
HpyAV CCTTC 2 cut(s) 115, 556
HpyCH4III ACNGT 5 cut(s) 74, 170, 629, 657, 1018
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 7 cut(s) 92, 123, 142, 221, 542, 697, 1003
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
HpyF3I CTNAG 3 cut(s) 207, 632, 1048
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 8 cut(s) 267, 355, 773, 805, 850, 926, 961, 989
Kzo9I GATC 5 cut(s) 43, 298, 460, 806, 970
LmnI GCTCC 6 cut(s) 82, 437, 575, 881, 915, 952
LweI GCATC 2 cut(s) 166, 709
MaeI CTAG 5 cut(s) 155, 231, 371, 468, 810
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 251, 338
MalI GATC 5 cut(s) 45, 300, 462, 808, 972
MboI GATC 5 cut(s) 43, 298, 460, 806, 970
MboII GAAGA 2 cut(s) 280, 1033
MflI RGATCY 3 cut(s) 460, 806, 970
MhlI GDGCHC 5 cut(s) 79, 144, 856, 912, 957
MluCI AATT 5 cut(s) 393, 427, 454, 490, 1054
MlyI GAGTC 4 cut(s) 32, 89, 608, 928
MmeI TCCRAC 1 cut(s) 930
MseI TTAA 2 cut(s) 609, 990
MslI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
MspA1I CMGCKG 3 cut(s) 314, 485, 691
MspI CCGG 2 cut(s) 555, 604
MspR9I CCNGG 2 cut(s) 555, 604
Mva1269I GAATGC 1 cut(s) 867
MwoI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
NciI CCSGG 2 cut(s) 555, 604
NdeI CATATG 1 cut(s) 113
NdeII GATC 5 cut(s) 43, 298, 460, 806, 970
NlaIII CATG 8 cut(s) 267, 355, 773, 805, 850, 926, 961, 989
NlaIV GGNNCC 2 cut(s) 462, 855
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 711
PagI TCATGA 1 cut(s) 801
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 824
PctI GAATGC 1 cut(s) 867
PfeI GAWTC 4 cut(s) 31, 37, 375, 664
PleI GAGTC 4 cut(s) 31, 89, 607, 928
PpsI GAGTC 4 cut(s) 31, 89, 607, 928
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 912, 957
PspN4I GGNNCC 2 cut(s) 462, 855
PspPI GGNCC 1 cut(s) 870
PstI CTGCAG 2 cut(s) 94, 699
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
PsuI RGATCY 3 cut(s) 460, 806, 970
PvuII CAGCTG 2 cut(s) 485, 691
RseI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
SacI GAGCTC 2 cut(s) 912, 957
SaqAI TTAA 2 cut(s) 609, 990
Sau3AI GATC 5 cut(s) 43, 298, 460, 806, 970
Sau96I GGNCC 1 cut(s) 870
SchI GAGTC 4 cut(s) 32, 89, 608, 928
ScrFI CCNGG 2 cut(s) 555, 604
SduI GDGCHC 5 cut(s) 79, 144, 856, 912, 957
SfaNI GCATC 2 cut(s) 166, 709
SfcI CTRYAG 3 cut(s) 90, 695, 1038
SinI GGWCC 1 cut(s) 870
SmiMI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 393, 427, 454, 490, 1054
SsiI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
SspMI CTAG 5 cut(s) 155, 231, 371, 468, 810
SstI GAGCTC 2 cut(s) 912, 957
StyD4I CCNGG 2 cut(s) 553, 602
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 5 cut(s) 74, 170, 629, 657, 1018
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 906
TasI AATT 5 cut(s) 393, 427, 454, 490, 1054
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 921
TfiI GAWTC 4 cut(s) 31, 37, 375, 664
Tru1I TTAA 2 cut(s) 609, 990
Tru9I TTAA 2 cut(s) 609, 990
TscAI CASTG 5 cut(s) 79, 175, 211, 951, 1033
TseFI GTSAC 2 cut(s) 251, 338
Tsp45I GTSAC 2 cut(s) 251, 338
TspDTI ATGAA 4 cut(s) 44, 290, 787, 939
TspGWI ACGGA 2 cut(s) 429, 453
TspRI CASTG 5 cut(s) 79, 175, 211, 951, 1033
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 870
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 1 cut(s) 393
XbaI TCTAGA 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 716
XspI CTAG 5 cut(s) 155, 231, 371, 468, 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.