transcription
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16560 |
| fragaria_vesca | FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 |
| malus_domestica | MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1 |
| prunus_persica | Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1 |
| pyrus_communis | pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200 |
| rosa_chinensis | RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811 |
| rosa_laevigata | RLG00000005502 |
| rosa_multiflora | Rmu_sc0006214.1_g000011 |
| rosa_roxburghii | Rroxscaffold_3G00275540 |
| rosa_rugosa | Rorug06G0409500 Rorug06G0409500 Rorug06G0409500 |
| rosa_samantha | Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400 |
| rosa_wichuraiana | Rw7G000770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1320 |
| AccI | GTMKAC | 1 cut(s) | 731 |
| AccIII | TCCGGA | 1 cut(s) | 1252 |
| AciI | CCGC | 2 cut(s) | 423, 952 |
| AclWI | GGATC | 3 cut(s) | 1089, 1183, 1227 |
| AcoI | YGGCCR | 1 cut(s) | 1030 |
| AcsI | RAATTY | 1 cut(s) | 276 |
| AcuI | CTGAAG | 2 cut(s) | 690, 1143 |
| AfaI | GTAC | 1 cut(s) | 1312 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 19, 230, 231, 566, 743, 1320 |
| AgsI | TTSAA | 2 cut(s) | 104, 343 |
| AhlI | ACTAGT | 1 cut(s) | 266 |
| AjiI | CACGTC | 1 cut(s) | 1294 |
| AjnI | CCWGG | 1 cut(s) | 667 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 209, 241 |
| Alw21I | GWGCWC | 4 cut(s) | 53, 430, 967, 1068 |
| Alw26I | GTCTC | 2 cut(s) | 541, 1279 |
| AlwI | GGATC | 3 cut(s) | 1089, 1183, 1227 |
| Aor13HI | TCCGGA | 1 cut(s) | 1252 |
| AoxI | GGCC | 2 cut(s) | 557, 1030 |
| ApeKI | GCWGC | 4 cut(s) | 526, 710, 1151, 1209 |
| ApoI | RAATTY | 1 cut(s) | 276 |
| AspA2I | CCTAGG | 1 cut(s) | 403 |
| AspLEI | GCGC | 1 cut(s) | 1214 |
| AspS9I | GGNCC | 4 cut(s) | 42, 671, 884, 1265 |
| AsuC2I | CCSGG | 1 cut(s) | 790 |
| AsuHPI | GGTGA | 2 cut(s) | 409, 789 |
| AsuNHI | GCTAGC | 1 cut(s) | 181 |
| AvaII | GGWCC | 4 cut(s) | 42, 671, 884, 1265 |
| AvrII | CCTAGG | 1 cut(s) | 403 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1103, 1136 |
| BalI | TGGCCA | 1 cut(s) | 1032 |
| BanII | GRGCYC | 4 cut(s) | 430, 774, 967, 1068 |
| Bbv12I | GWGCWC | 4 cut(s) | 53, 430, 967, 1068 |
| BbvI | GCAGC | 4 cut(s) | 513, 697, 1163, 1221 |
| BccI | CCATC | 4 cut(s) | 702, 852, 972, 1166 |
| BceAI | ACGGC | 1 cut(s) | 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 913, 947 |
| BciT130I | CCWGG | 1 cut(s) | 669 |
| BclI | TGATCA | 1 cut(s) | 1273 |
| BcnI | CCSGG | 1 cut(s) | 790 |
| BcoDI | GTCTC | 2 cut(s) | 541, 1279 |
| BcuI | ACTAGT | 1 cut(s) | 266 |
| BfaI | CTAG | 6 cut(s) | 75, 182, 186, 267, 404, 1091 |
| BfmI | CTRYAG | 1 cut(s) | 1149 |
| BisI | GCNGC | 4 cut(s) | 527, 711, 1152, 1210 |
| BlnI | CCTAGG | 1 cut(s) | 403 |
| BlsI | GCNGC | 4 cut(s) | 528, 712, 1153, 1211 |
| Bme1390I | CCNGG | 2 cut(s) | 669, 790 |
| Bme18I | GGWCC | 4 cut(s) | 42, 671, 884, 1265 |
| BmgBI | CACGTC | 1 cut(s) | 1294 |
| BmgT120I | GGNCC | 4 cut(s) | 42, 671, 884, 1265 |
| BmiI | GGNNCC | 3 cut(s) | 43, 757, 771 |
| BmrFI | CCNGG | 2 cut(s) | 669, 790 |
| BmrI | ACTGGG | 1 cut(s) | 402 |
| BmsI | GCATC | 4 cut(s) | 401, 796, 963, 1030 |
| BmtI | GCTAGC | 1 cut(s) | 185 |
| BmuI | ACTGGG | 1 cut(s) | 402 |
| BpuEI | CTTGAG | 1 cut(s) | 1082 |
| BpuMI | CCSGG | 1 cut(s) | 790 |
| BsaI | GGTCTC | 1 cut(s) | 1279 |
| BsaJI | CCNNGG | 5 cut(s) | 225, 403, 667, 968, 994 |
| BsaWI | WCCGGW | 1 cut(s) | 1252 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 21, 51, 71, 101, 761, 791 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 19, 230, 231, 566, 743, 1320 |
| Bse118I | RCCGGY | 2 cut(s) | 419, 761 |
| Bse1I | ACTGG | 3 cut(s) | 397, 800, 1308 |
| BseAI | TCCGGA | 1 cut(s) | 1252 |
| BseBI | CCWGG | 1 cut(s) | 669 |
| BseDI | CCNNGG | 5 cut(s) | 225, 403, 667, 968, 994 |
| BseGI | GGATG | 4 cut(s) | 694, 811, 978, 1177 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 19, 230, 231, 566, 743, 1320 |
| BseMII | CTCAG | 1 cut(s) | 885 |
| BseNI | ACTGG | 3 cut(s) | 397, 800, 1308 |
| BseRI | GAGGAG | 5 cut(s) | 42, 762, 765, 768, 891 |
| BseXI | GCAGC | 4 cut(s) | 513, 697, 1163, 1221 |
| BsgI | GTGCAG | 1 cut(s) | 815 |
| BshFI | GGCC | 2 cut(s) | 559, 1032 |
| BsiHKAI | GWGCWC | 4 cut(s) | 53, 430, 967, 1068 |
| BsiSI | CCGG | 4 cut(s) | 420, 762, 789, 1253 |
| BslFI | GGGAC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 19, 230, 231, 566, 743, 1320 |
| BsmAI | GTCTC | 2 cut(s) | 541, 1279 |
| BsmFI | GGGAC | 1 cut(s) | 55 |
| BsnI | GGCC | 2 cut(s) | 559, 1032 |
| Bso31I | GGTCTC | 1 cut(s) | 1279 |
| Bsp1286I | GDGCHC | 5 cut(s) | 53, 430, 774, 967, 1068 |
| Bsp13I | TCCGGA | 1 cut(s) | 1252 |
| Bsp143I | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| Bsp19I | CCATGG | 1 cut(s) | 994 |
| BspACI | CCGC | 2 cut(s) | 423, 952 |
| BspANI | GGCC | 2 cut(s) | 559, 1032 |
| BspCNI | CTCAG | 1 cut(s) | 886 |
| BspEI | TCCGGA | 1 cut(s) | 1252 |
| BspHI | TCATGA | 1 cut(s) | 1068 |
| BspLI | GGNNCC | 3 cut(s) | 43, 757, 771 |
| BspMAI | CTGCAG | 1 cut(s) | 1153 |
| BspOI | GCTAGC | 1 cut(s) | 185 |
| BspPI | GGATC | 3 cut(s) | 1089, 1183, 1227 |
| BspTNI | GGTCTC | 1 cut(s) | 1279 |
| BsrFI | RCCGGY | 2 cut(s) | 419, 761 |
| BsrI | ACTGG | 3 cut(s) | 397, 800, 1308 |
| BssAI | RCCGGY | 2 cut(s) | 419, 761 |
| BssECI | CCNNGG | 5 cut(s) | 225, 403, 667, 968, 994 |
| BssMI | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| BssT1I | CCWWGG | 3 cut(s) | 225, 403, 994 |
| Bst2UI | CCWGG | 1 cut(s) | 669 |
| Bst4CI | ACNGT | 6 cut(s) | 485, 494, 593, 1129, 1248, 1269 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 681 |
| BstC8I | GCNNGC | 2 cut(s) | 183, 1149 |
| BstDEI | CTNAG | 1 cut(s) | 894 |
| BstDSI | CCRYGG | 1 cut(s) | 994 |
| BstF5I | GGATG | 4 cut(s) | 694, 811, 978, 1177 |
| BstHHI | GCGC | 1 cut(s) | 1214 |
| BstKTI | GATC | 7 cut(s) | 286, 637, 923, 1084, 1178, 1222, 1276 |
| BstMAI | GTCTC | 2 cut(s) | 541, 1279 |
| BstMBI | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 420, 556 |
| BstNI | CCWGG | 1 cut(s) | 669 |
| BstSCI | CCNGG | 2 cut(s) | 667, 788 |
| BstSFI | CTRYAG | 1 cut(s) | 1149 |
| BstV1I | GCAGC | 4 cut(s) | 513, 697, 1163, 1221 |
| BstX2I | RGATCY | 2 cut(s) | 1081, 1175 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 766 |
| BstYI | RGATCY | 2 cut(s) | 1081, 1175 |
| BsuRI | GGCC | 2 cut(s) | 559, 1032 |
| BtgI | CCRYGG | 1 cut(s) | 994 |
| BtgZI | GCGATG | 2 cut(s) | 424, 991 |
| BtrI | CACGTC | 1 cut(s) | 1294 |
| BtsCI | GGATG | 4 cut(s) | 694, 811, 978, 1177 |
| BtsIMutI | CAGTG | 3 cut(s) | 390, 807, 1137 |
| Cac8I | GCNNGC | 2 cut(s) | 183, 1149 |
| CciI | TCATGA | 1 cut(s) | 1068 |
| CfoI | GCGC | 1 cut(s) | 1214 |
| Cfr10I | RCCGGY | 2 cut(s) | 419, 761 |
| Cfr13I | GGNCC | 4 cut(s) | 42, 671, 884, 1265 |
| Csp6I | GTAC | 1 cut(s) | 1311 |
| CviAII | CATG | 8 cut(s) | 775, 908, 995, 1010, 1034, 1069, 1097, 1226 |
| CviQI | GTAC | 1 cut(s) | 1311 |
| DdeI | CTNAG | 1 cut(s) | 894 |
| DpnI | GATC | 7 cut(s) | 285, 636, 922, 1083, 1177, 1221, 1275 |
| DpnII | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| DraI | TTTAAA | 1 cut(s) | 814 |
| EaeI | YGGCCR | 1 cut(s) | 1030 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 681 |
| EarI | CTCTTC | 2 cut(s) | 297, 681 |
| EciI | GGCGGA | 1 cut(s) | 438 |
| Ecl136II | GAGCTC | 3 cut(s) | 428, 965, 1066 |
| Eco130I | CCWWGG | 3 cut(s) | 225, 403, 994 |
| Eco24I | GRGCYC | 4 cut(s) | 430, 774, 967, 1068 |
| Eco31I | GGTCTC | 1 cut(s) | 1279 |
| Eco47I | GGWCC | 4 cut(s) | 42, 671, 884, 1265 |
| Eco53kI | GAGCTC | 3 cut(s) | 428, 965, 1066 |
| Eco57I | CTGAAG | 2 cut(s) | 690, 1143 |
| EcoICRI | GAGCTC | 3 cut(s) | 428, 965, 1066 |
| EcoO109I | RGGNCCY | 2 cut(s) | 42, 671 |
| EcoRII | CCWGG | 1 cut(s) | 667 |
| EcoT14I | CCWWGG | 3 cut(s) | 225, 403, 994 |
| EcoT38I | GRGCYC | 4 cut(s) | 430, 774, 967, 1068 |
| ErhI | CCWWGG | 3 cut(s) | 225, 403, 994 |
| FaeI | CATG | 8 cut(s) | 778, 911, 998, 1013, 1037, 1072, 1100, 1229 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 644, 676 |
| FaqI | GGGAC | 1 cut(s) | 55 |
| FatI | CATG | 8 cut(s) | 774, 907, 994, 1009, 1033, 1068, 1096, 1225 |
| FbaI | TGATCA | 1 cut(s) | 1273 |
| FblI | GTMKAC | 1 cut(s) | 731 |
| Fnu4HI | GCNGC | 4 cut(s) | 527, 711, 1152, 1210 |
| FokI | GGATG | 4 cut(s) | 681, 818, 985, 1184 |
| FriOI | GRGCYC | 4 cut(s) | 430, 774, 967, 1068 |
| Fsp4HI | GCNGC | 4 cut(s) | 527, 711, 1152, 1210 |
| FspBI | CTAG | 6 cut(s) | 75, 182, 186, 267, 404, 1091 |
| GlaI | GCGC | 1 cut(s) | 1213 |
| GluI | GCNGC | 4 cut(s) | 527, 711, 1152, 1210 |
| HaeIII | GGCC | 2 cut(s) | 559, 1032 |
| HapII | CCGG | 4 cut(s) | 420, 762, 789, 1253 |
| HhaI | GCGC | 1 cut(s) | 1214 |
| Hin1II | CATG | 8 cut(s) | 778, 911, 998, 1013, 1037, 1072, 1100, 1229 |
| Hin6I | GCGC | 1 cut(s) | 1212 |
| HinP1I | GCGC | 1 cut(s) | 1212 |
| HinfI | GANTC | 4 cut(s) | 211, 571, 647, 927 |
| HpaII | CCGG | 4 cut(s) | 420, 762, 789, 1253 |
| HphI | GGTGA | 2 cut(s) | 409, 789 |
| Hpy166II | GTNNAC | 2 cut(s) | 732, 1297 |
| Hpy188I | TCNGA | 9 cut(s) | 216, 547, 588, 746, 895, 969, 1171, 1203, 1273 |
| Hpy8I | GTNNAC | 2 cut(s) | 732, 1297 |
| HpyAV | CCTTC | 5 cut(s) | 64, 75, 224, 693, 714 |
| HpyCH4III | ACNGT | 6 cut(s) | 485, 494, 593, 1129, 1248, 1269 |
| HpyCH4IV | ACGT | 1 cut(s) | 1293 |
| HpyCH4V | TGCA | 2 cut(s) | 832, 1151 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 420, 556 |
| HpyF3I | CTNAG | 1 cut(s) | 894 |
| HpySE526I | ACGT | 1 cut(s) | 1293 |
| Hsp92II | CATG | 8 cut(s) | 778, 911, 998, 1013, 1037, 1072, 1100, 1229 |
| HspAI | GCGC | 1 cut(s) | 1212 |
| Kpn2I | TCCGGA | 1 cut(s) | 1252 |
| Ksp22I | TGATCA | 1 cut(s) | 1273 |
| Kzo9I | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| LmnI | GCTCC | 7 cut(s) | 56, 425, 547, 755, 769, 970, 1255 |
| Lsp1109I | GCAGC | 4 cut(s) | 513, 697, 1163, 1221 |
| LweI | GCATC | 4 cut(s) | 401, 796, 963, 1030 |
| MaeI | CTAG | 6 cut(s) | 75, 182, 186, 267, 404, 1091 |
| MaeII | ACGT | 1 cut(s) | 1293 |
| MaeIII | GTNAC | 2 cut(s) | 77, 1325 |
| MalI | GATC | 7 cut(s) | 285, 636, 922, 1083, 1177, 1221, 1275 |
| MboI | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| MboII | GAAGA | 8 cut(s) | 60, 63, 180, 284, 470, 668, 839, 1149 |
| MflI | RGATCY | 2 cut(s) | 1081, 1175 |
| MhlI | GDGCHC | 5 cut(s) | 53, 430, 774, 967, 1068 |
| MlsI | TGGCCA | 1 cut(s) | 1032 |
| MluCI | AATT | 6 cut(s) | 116, 138, 276, 325, 336, 870 |
| MluNI | TGGCCA | 1 cut(s) | 1032 |
| MmeI | TCCRAC | 2 cut(s) | 513, 862 |
| Mox20I | TGGCCA | 1 cut(s) | 1032 |
| MroI | TCCGGA | 1 cut(s) | 1252 |
| MscI | TGGCCA | 1 cut(s) | 1032 |
| MseI | TTAA | 8 cut(s) | 137, 500, 509, 554, 564, 690, 813, 1131 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1026 |
| Msp20I | TGGCCA | 1 cut(s) | 1032 |
| MspA1I | CMGCKG | 1 cut(s) | 710 |
| MspI | CCGG | 4 cut(s) | 420, 762, 789, 1253 |
| MspR9I | CCNGG | 2 cut(s) | 669, 790 |
| MvaI | CCWGG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 420, 556 |
| NciI | CCSGG | 1 cut(s) | 790 |
| NcoI | CCATGG | 1 cut(s) | 994 |
| NdeII | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| NheI | GCTAGC | 1 cut(s) | 181 |
| NlaIII | CATG | 8 cut(s) | 778, 911, 998, 1013, 1037, 1072, 1100, 1229 |
| NlaIV | GGNNCC | 3 cut(s) | 43, 757, 771 |
| PagI | TCATGA | 1 cut(s) | 1068 |
| PfeI | GAWTC | 4 cut(s) | 211, 571, 647, 927 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1320 |
| PkrI | GCNGC | 4 cut(s) | 528, 712, 1153, 1211 |
| PpuMI | RGGWCCY | 2 cut(s) | 42, 671 |
| Psp124BI | GAGCTC | 3 cut(s) | 430, 967, 1068 |
| Psp5II | RGGWCCY | 2 cut(s) | 42, 671 |
| Psp6I | CCWGG | 1 cut(s) | 667 |
| PspGI | CCWGG | 1 cut(s) | 667 |
| PspN4I | GGNNCC | 3 cut(s) | 43, 757, 771 |
| PspPI | GGNCC | 4 cut(s) | 42, 671, 884, 1265 |
| PspPPI | RGGWCCY | 2 cut(s) | 42, 671 |
| PstI | CTGCAG | 1 cut(s) | 1153 |
| PsuI | RGATCY | 2 cut(s) | 1081, 1175 |
| PvuII | CAGCTG | 1 cut(s) | 710 |
| RsaI | GTAC | 1 cut(s) | 1312 |
| RsaNI | GTAC | 1 cut(s) | 1311 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1026 |
| SacI | GAGCTC | 3 cut(s) | 430, 967, 1068 |
| SaqAI | TTAA | 8 cut(s) | 137, 500, 509, 554, 564, 690, 813, 1131 |
| SatI | GCNGC | 4 cut(s) | 527, 711, 1152, 1210 |
| Sau3AI | GATC | 7 cut(s) | 283, 634, 920, 1081, 1175, 1219, 1273 |
| Sau96I | GGNCC | 4 cut(s) | 42, 671, 884, 1265 |
| ScrFI | CCNGG | 2 cut(s) | 669, 790 |
| SduI | GDGCHC | 5 cut(s) | 53, 430, 774, 967, 1068 |
| SfaNI | GCATC | 4 cut(s) | 401, 796, 963, 1030 |
| SfcI | CTRYAG | 1 cut(s) | 1149 |
| SgrAI | CRCCGGYG | 1 cut(s) | 419 |
| SinI | GGWCC | 4 cut(s) | 42, 671, 884, 1265 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1026 |
| SmlI | CTYRAG | 1 cut(s) | 1061 |
| SmoI | CTYRAG | 1 cut(s) | 1061 |
| SpeI | ACTAGT | 1 cut(s) | 266 |
| Sse9I | AATT | 6 cut(s) | 116, 138, 276, 325, 336, 870 |
| SsiI | CCGC | 2 cut(s) | 423, 952 |
| SspI | AATATT | 1 cut(s) | 622 |
| SspMI | CTAG | 6 cut(s) | 75, 182, 186, 267, 404, 1091 |
| SstI | GAGCTC | 3 cut(s) | 430, 967, 1068 |
| StyD4I | CCNGG | 2 cut(s) | 667, 788 |
| StyI | CCWWGG | 3 cut(s) | 225, 403, 994 |
| TaaI | ACNGT | 6 cut(s) | 485, 494, 593, 1129, 1248, 1269 |
| TaiI | ACGT | 1 cut(s) | 1296 |
| TaqI | TCGA | 2 cut(s) | 923, 1123 |
| TasI | AATT | 6 cut(s) | 116, 138, 276, 325, 336, 870 |
| TfiI | GAWTC | 4 cut(s) | 211, 571, 647, 927 |
| Tru1I | TTAA | 8 cut(s) | 137, 500, 509, 554, 564, 690, 813, 1131 |
| Tru9I | TTAA | 8 cut(s) | 137, 500, 509, 554, 564, 690, 813, 1131 |
| TscAI | CASTG | 3 cut(s) | 397, 807, 1144 |
| TseI | GCWGC | 4 cut(s) | 526, 710, 1151, 1209 |
| TspGWI | ACGGA | 1 cut(s) | 1232 |
| TspRI | CASTG | 3 cut(s) | 397, 807, 1144 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1320 |
| VpaK11BI | GGWCC | 4 cut(s) | 42, 671, 884, 1265 |
| XapI | RAATTY | 1 cut(s) | 276 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 389 |
| XmaJI | CCTAGG | 1 cut(s) | 403 |
| XmiI | GTMKAC | 1 cut(s) | 731 |
| XspI | CTAG | 6 cut(s) | 75, 182, 186, 267, 404, 1091 |