pycom09g17910
MYB Family

transcription

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
18473500 .. 18476325
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17910.5

Sequence Viewer

Length: 1341 bp
ATGGGTTTTGACCAGAGAGGGGAGAGAGGAGAGAGAGTGGGGACCTTGTGCTCCTTCTTTTCTCCTTCTTCTTCTAGTAACCAAATCTCCCCCAAATATCTTGAAGCTCAAAAGAAATTACCTCTACCTTTTTCTTTAATTATTTTCCTCAACTTTCTACACTCACGAAGAAAAGAGAGGCTAGCTAGTATTTGGTTTAGTAAAGTAGTGAATCAGAAAATGCCCTTGGAAGGGATTTTCATAGAACCCTCTACAACCAGAACTACTAGTTCTCAAATTCCTGATCTTTCTCTTCATATTAGTCCTCCCAACACTACTTCCTCTAATTCATCATCAATTTTCAATAATAAAACCACTAATGAACCCCAAAATCCCACTACCCAAGCTCACACTGGGCTATCCCTAGGGCGATGCTTCACCGGCGGAGCTCACGAACAAGAACCACCACAAAACCCATATCAACAACAAAGTTTTCATCTTCACAGTTCCAACAGTCATTTAAGCCACTTAAATCACGGCGTTTCGCTGCTTGATGTCTCATCATCGGAGCGTTTAAGGCCGATTAAAGGGATTCCTGTCTATCATCAGAACCGTTCATTCCCTTTCTTGCCTATGGACAATATTATCACAAGAGATCATCACAAGGATTCCAAGATGTGCTTTTACCCAGGACCTCTTCCACCTTCCTTTAACCATCCTTTTCCTTCAGCTGCCACCCATAACACGCAGTCTACACCTTATTTCGGAGGAGGAGGAGCCACCGGCTTGGAGCCCATGTCAAGATTTACCGGGTTCTCACCAGTGGATGCGTTTAAATCAAACAACCAACTGCACCACCACCACCATCTTCATCATCACAATCAGTATGGAATTGGAGGAGTTGGACCTATTTCTGAGGGTTCTCATCATGGTATTATGAGATCGAGATTCTTGCCAAAGCTACCGACAAAGCGGAGTATGAGAGCTCCGAGGATGCGATGGACAAGCACTCTCCATGGTAGATTTGTTCATGCTGTTGAGCATCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGAATGTCAAGGATCTCACTCTAGCTCATGTCAAGAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGGCAATCGGATGGATCTGGCGAGGACGACATACTCTCTCCGATTAGCAGCGCAACGGATCATCATGGACTACACAATACTCAACAGTTTCCGGAGCAACGAGGACCGTCTGATCAGTCTGTGAGACCAGACGTGGACTACACTTCCAGTACCACTCTTTGGAGTAACTCGTCAAGGTAG

Protein Analysis

447

Amino Acids

49.63

Weight (kDa)

9.53

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1320
AccI GTMKAC 1 cut(s) 731
AccIII TCCGGA 1 cut(s) 1252
AciI CCGC 2 cut(s) 423, 952
AclWI GGATC 3 cut(s) 1089, 1183, 1227
AcoI YGGCCR 1 cut(s) 1030
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 2 cut(s) 690, 1143
AfaI GTAC 1 cut(s) 1312
AfiI CCNNNNNNNGG 6 cut(s) 19, 230, 231, 566, 743, 1320
AgsI TTSAA 2 cut(s) 104, 343
AhlI ACTAGT 1 cut(s) 266
AjiI CACGTC 1 cut(s) 1294
AjnI CCWGG 1 cut(s) 667
AjuI GAANNNNNNNTTGG 2 cut(s) 209, 241
Alw21I GWGCWC 4 cut(s) 53, 430, 967, 1068
Alw26I GTCTC 2 cut(s) 541, 1279
AlwI GGATC 3 cut(s) 1089, 1183, 1227
Aor13HI TCCGGA 1 cut(s) 1252
AoxI GGCC 2 cut(s) 557, 1030
ApeKI GCWGC 4 cut(s) 526, 710, 1151, 1209
ApoI RAATTY 1 cut(s) 276
AspA2I CCTAGG 1 cut(s) 403
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 4 cut(s) 42, 671, 884, 1265
AsuC2I CCSGG 1 cut(s) 790
AsuHPI GGTGA 2 cut(s) 409, 789
AsuNHI GCTAGC 1 cut(s) 181
AvaII GGWCC 4 cut(s) 42, 671, 884, 1265
AvrII CCTAGG 1 cut(s) 403
BaeI ACNNNNGTAYC 2 cut(s) 1103, 1136
BalI TGGCCA 1 cut(s) 1032
BanII GRGCYC 4 cut(s) 430, 774, 967, 1068
Bbv12I GWGCWC 4 cut(s) 53, 430, 967, 1068
BbvI GCAGC 4 cut(s) 513, 697, 1163, 1221
BccI CCATC 4 cut(s) 702, 852, 972, 1166
BceAI ACGGC 1 cut(s) 532
BcgI CGANNNNNNTGC 2 cut(s) 913, 947
BciT130I CCWGG 1 cut(s) 669
BclI TGATCA 1 cut(s) 1273
BcnI CCSGG 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 541, 1279
BcuI ACTAGT 1 cut(s) 266
BfaI CTAG 6 cut(s) 75, 182, 186, 267, 404, 1091
BfmI CTRYAG 1 cut(s) 1149
BisI GCNGC 4 cut(s) 527, 711, 1152, 1210
BlnI CCTAGG 1 cut(s) 403
BlsI GCNGC 4 cut(s) 528, 712, 1153, 1211
Bme1390I CCNGG 2 cut(s) 669, 790
Bme18I GGWCC 4 cut(s) 42, 671, 884, 1265
BmgBI CACGTC 1 cut(s) 1294
BmgT120I GGNCC 4 cut(s) 42, 671, 884, 1265
BmiI GGNNCC 3 cut(s) 43, 757, 771
BmrFI CCNGG 2 cut(s) 669, 790
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 4 cut(s) 401, 796, 963, 1030
BmtI GCTAGC 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 1082
BpuMI CCSGG 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 1279
BsaJI CCNNGG 5 cut(s) 225, 403, 667, 968, 994
BsaWI WCCGGW 1 cut(s) 1252
BsaXI ACNNNNNCTCC 6 cut(s) 21, 51, 71, 101, 761, 791
Bsc4I CCNNNNNNNGG 6 cut(s) 19, 230, 231, 566, 743, 1320
Bse118I RCCGGY 2 cut(s) 419, 761
Bse1I ACTGG 3 cut(s) 397, 800, 1308
BseAI TCCGGA 1 cut(s) 1252
BseBI CCWGG 1 cut(s) 669
BseDI CCNNGG 5 cut(s) 225, 403, 667, 968, 994
BseGI GGATG 4 cut(s) 694, 811, 978, 1177
BseLI CCNNNNNNNGG 6 cut(s) 19, 230, 231, 566, 743, 1320
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 3 cut(s) 397, 800, 1308
BseRI GAGGAG 5 cut(s) 42, 762, 765, 768, 891
BseXI GCAGC 4 cut(s) 513, 697, 1163, 1221
BsgI GTGCAG 1 cut(s) 815
BshFI GGCC 2 cut(s) 559, 1032
BsiHKAI GWGCWC 4 cut(s) 53, 430, 967, 1068
BsiSI CCGG 4 cut(s) 420, 762, 789, 1253
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 6 cut(s) 19, 230, 231, 566, 743, 1320
BsmAI GTCTC 2 cut(s) 541, 1279
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 2 cut(s) 559, 1032
Bso31I GGTCTC 1 cut(s) 1279
Bsp1286I GDGCHC 5 cut(s) 53, 430, 774, 967, 1068
Bsp13I TCCGGA 1 cut(s) 1252
Bsp143I GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
Bsp19I CCATGG 1 cut(s) 994
BspACI CCGC 2 cut(s) 423, 952
BspANI GGCC 2 cut(s) 559, 1032
BspCNI CTCAG 1 cut(s) 886
BspEI TCCGGA 1 cut(s) 1252
BspHI TCATGA 1 cut(s) 1068
BspLI GGNNCC 3 cut(s) 43, 757, 771
BspMAI CTGCAG 1 cut(s) 1153
BspOI GCTAGC 1 cut(s) 185
BspPI GGATC 3 cut(s) 1089, 1183, 1227
BspTNI GGTCTC 1 cut(s) 1279
BsrFI RCCGGY 2 cut(s) 419, 761
BsrI ACTGG 3 cut(s) 397, 800, 1308
BssAI RCCGGY 2 cut(s) 419, 761
BssECI CCNNGG 5 cut(s) 225, 403, 667, 968, 994
BssMI GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
BssT1I CCWWGG 3 cut(s) 225, 403, 994
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 6 cut(s) 485, 494, 593, 1129, 1248, 1269
Bst6I CTCTTC 2 cut(s) 297, 681
BstC8I GCNNGC 2 cut(s) 183, 1149
BstDEI CTNAG 1 cut(s) 894
BstDSI CCRYGG 1 cut(s) 994
BstF5I GGATG 4 cut(s) 694, 811, 978, 1177
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 7 cut(s) 286, 637, 923, 1084, 1178, 1222, 1276
BstMAI GTCTC 2 cut(s) 541, 1279
BstMBI GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
BstMWI GCNNNNNNNGC 2 cut(s) 420, 556
BstNI CCWGG 1 cut(s) 669
BstSCI CCNGG 2 cut(s) 667, 788
BstSFI CTRYAG 1 cut(s) 1149
BstV1I GCAGC 4 cut(s) 513, 697, 1163, 1221
BstX2I RGATCY 2 cut(s) 1081, 1175
BstXI CCANNNNNNTGG 1 cut(s) 766
BstYI RGATCY 2 cut(s) 1081, 1175
BsuRI GGCC 2 cut(s) 559, 1032
BtgI CCRYGG 1 cut(s) 994
BtgZI GCGATG 2 cut(s) 424, 991
BtrI CACGTC 1 cut(s) 1294
BtsCI GGATG 4 cut(s) 694, 811, 978, 1177
BtsIMutI CAGTG 3 cut(s) 390, 807, 1137
Cac8I GCNNGC 2 cut(s) 183, 1149
CciI TCATGA 1 cut(s) 1068
CfoI GCGC 1 cut(s) 1214
Cfr10I RCCGGY 2 cut(s) 419, 761
Cfr13I GGNCC 4 cut(s) 42, 671, 884, 1265
Csp6I GTAC 1 cut(s) 1311
CviAII CATG 8 cut(s) 775, 908, 995, 1010, 1034, 1069, 1097, 1226
CviQI GTAC 1 cut(s) 1311
DdeI CTNAG 1 cut(s) 894
DpnI GATC 7 cut(s) 285, 636, 922, 1083, 1177, 1221, 1275
DpnII GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
DraI TTTAAA 1 cut(s) 814
EaeI YGGCCR 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 297, 681
EarI CTCTTC 2 cut(s) 297, 681
EciI GGCGGA 1 cut(s) 438
Ecl136II GAGCTC 3 cut(s) 428, 965, 1066
Eco130I CCWWGG 3 cut(s) 225, 403, 994
Eco24I GRGCYC 4 cut(s) 430, 774, 967, 1068
Eco31I GGTCTC 1 cut(s) 1279
Eco47I GGWCC 4 cut(s) 42, 671, 884, 1265
Eco53kI GAGCTC 3 cut(s) 428, 965, 1066
Eco57I CTGAAG 2 cut(s) 690, 1143
EcoICRI GAGCTC 3 cut(s) 428, 965, 1066
EcoO109I RGGNCCY 2 cut(s) 42, 671
EcoRII CCWGG 1 cut(s) 667
EcoT14I CCWWGG 3 cut(s) 225, 403, 994
EcoT38I GRGCYC 4 cut(s) 430, 774, 967, 1068
ErhI CCWWGG 3 cut(s) 225, 403, 994
FaeI CATG 8 cut(s) 778, 911, 998, 1013, 1037, 1072, 1100, 1229
FalI AAGNNNNNCTT 2 cut(s) 644, 676
FaqI GGGAC 1 cut(s) 55
FatI CATG 8 cut(s) 774, 907, 994, 1009, 1033, 1068, 1096, 1225
FbaI TGATCA 1 cut(s) 1273
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 4 cut(s) 527, 711, 1152, 1210
FokI GGATG 4 cut(s) 681, 818, 985, 1184
FriOI GRGCYC 4 cut(s) 430, 774, 967, 1068
Fsp4HI GCNGC 4 cut(s) 527, 711, 1152, 1210
FspBI CTAG 6 cut(s) 75, 182, 186, 267, 404, 1091
GlaI GCGC 1 cut(s) 1213
GluI GCNGC 4 cut(s) 527, 711, 1152, 1210
HaeIII GGCC 2 cut(s) 559, 1032
HapII CCGG 4 cut(s) 420, 762, 789, 1253
HhaI GCGC 1 cut(s) 1214
Hin1II CATG 8 cut(s) 778, 911, 998, 1013, 1037, 1072, 1100, 1229
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HinfI GANTC 4 cut(s) 211, 571, 647, 927
HpaII CCGG 4 cut(s) 420, 762, 789, 1253
HphI GGTGA 2 cut(s) 409, 789
Hpy166II GTNNAC 2 cut(s) 732, 1297
Hpy188I TCNGA 9 cut(s) 216, 547, 588, 746, 895, 969, 1171, 1203, 1273
Hpy8I GTNNAC 2 cut(s) 732, 1297
HpyAV CCTTC 5 cut(s) 64, 75, 224, 693, 714
HpyCH4III ACNGT 6 cut(s) 485, 494, 593, 1129, 1248, 1269
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 2 cut(s) 832, 1151
HpyF10VI GCNNNNNNNGC 2 cut(s) 420, 556
HpyF3I CTNAG 1 cut(s) 894
HpySE526I ACGT 1 cut(s) 1293
Hsp92II CATG 8 cut(s) 778, 911, 998, 1013, 1037, 1072, 1100, 1229
HspAI GCGC 1 cut(s) 1212
Kpn2I TCCGGA 1 cut(s) 1252
Ksp22I TGATCA 1 cut(s) 1273
Kzo9I GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
LmnI GCTCC 7 cut(s) 56, 425, 547, 755, 769, 970, 1255
Lsp1109I GCAGC 4 cut(s) 513, 697, 1163, 1221
LweI GCATC 4 cut(s) 401, 796, 963, 1030
MaeI CTAG 6 cut(s) 75, 182, 186, 267, 404, 1091
MaeII ACGT 1 cut(s) 1293
MaeIII GTNAC 2 cut(s) 77, 1325
MalI GATC 7 cut(s) 285, 636, 922, 1083, 1177, 1221, 1275
MboI GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
MboII GAAGA 8 cut(s) 60, 63, 180, 284, 470, 668, 839, 1149
MflI RGATCY 2 cut(s) 1081, 1175
MhlI GDGCHC 5 cut(s) 53, 430, 774, 967, 1068
MlsI TGGCCA 1 cut(s) 1032
MluCI AATT 6 cut(s) 116, 138, 276, 325, 336, 870
MluNI TGGCCA 1 cut(s) 1032
MmeI TCCRAC 2 cut(s) 513, 862
Mox20I TGGCCA 1 cut(s) 1032
MroI TCCGGA 1 cut(s) 1252
MscI TGGCCA 1 cut(s) 1032
MseI TTAA 8 cut(s) 137, 500, 509, 554, 564, 690, 813, 1131
MslI CAYNNNNRTG 1 cut(s) 1026
Msp20I TGGCCA 1 cut(s) 1032
MspA1I CMGCKG 1 cut(s) 710
MspI CCGG 4 cut(s) 420, 762, 789, 1253
MspR9I CCNGG 2 cut(s) 669, 790
MvaI CCWGG 1 cut(s) 669
MwoI GCNNNNNNNGC 2 cut(s) 420, 556
NciI CCSGG 1 cut(s) 790
NcoI CCATGG 1 cut(s) 994
NdeII GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
NheI GCTAGC 1 cut(s) 181
NlaIII CATG 8 cut(s) 778, 911, 998, 1013, 1037, 1072, 1100, 1229
NlaIV GGNNCC 3 cut(s) 43, 757, 771
PagI TCATGA 1 cut(s) 1068
PfeI GAWTC 4 cut(s) 211, 571, 647, 927
PflMI CCANNNNNTGG 1 cut(s) 1320
PkrI GCNGC 4 cut(s) 528, 712, 1153, 1211
PpuMI RGGWCCY 2 cut(s) 42, 671
Psp124BI GAGCTC 3 cut(s) 430, 967, 1068
Psp5II RGGWCCY 2 cut(s) 42, 671
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 3 cut(s) 43, 757, 771
PspPI GGNCC 4 cut(s) 42, 671, 884, 1265
PspPPI RGGWCCY 2 cut(s) 42, 671
PstI CTGCAG 1 cut(s) 1153
PsuI RGATCY 2 cut(s) 1081, 1175
PvuII CAGCTG 1 cut(s) 710
RsaI GTAC 1 cut(s) 1312
RsaNI GTAC 1 cut(s) 1311
RseI CAYNNNNRTG 1 cut(s) 1026
SacI GAGCTC 3 cut(s) 430, 967, 1068
SaqAI TTAA 8 cut(s) 137, 500, 509, 554, 564, 690, 813, 1131
SatI GCNGC 4 cut(s) 527, 711, 1152, 1210
Sau3AI GATC 7 cut(s) 283, 634, 920, 1081, 1175, 1219, 1273
Sau96I GGNCC 4 cut(s) 42, 671, 884, 1265
ScrFI CCNGG 2 cut(s) 669, 790
SduI GDGCHC 5 cut(s) 53, 430, 774, 967, 1068
SfaNI GCATC 4 cut(s) 401, 796, 963, 1030
SfcI CTRYAG 1 cut(s) 1149
SgrAI CRCCGGYG 1 cut(s) 419
SinI GGWCC 4 cut(s) 42, 671, 884, 1265
SmiMI CAYNNNNRTG 1 cut(s) 1026
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
SpeI ACTAGT 1 cut(s) 266
Sse9I AATT 6 cut(s) 116, 138, 276, 325, 336, 870
SsiI CCGC 2 cut(s) 423, 952
SspI AATATT 1 cut(s) 622
SspMI CTAG 6 cut(s) 75, 182, 186, 267, 404, 1091
SstI GAGCTC 3 cut(s) 430, 967, 1068
StyD4I CCNGG 2 cut(s) 667, 788
StyI CCWWGG 3 cut(s) 225, 403, 994
TaaI ACNGT 6 cut(s) 485, 494, 593, 1129, 1248, 1269
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 2 cut(s) 923, 1123
TasI AATT 6 cut(s) 116, 138, 276, 325, 336, 870
TfiI GAWTC 4 cut(s) 211, 571, 647, 927
Tru1I TTAA 8 cut(s) 137, 500, 509, 554, 564, 690, 813, 1131
Tru9I TTAA 8 cut(s) 137, 500, 509, 554, 564, 690, 813, 1131
TscAI CASTG 3 cut(s) 397, 807, 1144
TseI GCWGC 4 cut(s) 526, 710, 1151, 1209
TspGWI ACGGA 1 cut(s) 1232
TspRI CASTG 3 cut(s) 397, 807, 1144
Van91I CCANNNNNTGG 1 cut(s) 1320
VpaK11BI GGWCC 4 cut(s) 42, 671, 884, 1265
XapI RAATTY 1 cut(s) 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 389
XmaJI CCTAGG 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 731
XspI CTAG 6 cut(s) 75, 182, 186, 267, 404, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.