Rh7CG009500
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004135
Physical Location & Seq
Reverse (-)
749208 .. 754717
5510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG009500.1

Sequence Viewer

Length: 1062 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACTTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTCACAGTGACGATGCTGCTACTACTCCACTCGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACTAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCCGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGATCCGTCTAGGGATATTTCAACAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGCTGCTGCTGCTATGGGAGCAGGAGTAGGAGGAGGGTTTGAGTCCAGGTTTAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGGTCATCATCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACCGACAAACCTGTAGCTTCCTCAGGTAATTCGTATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

353

Amino Acids

38.57

Weight (kDa)

8.26

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 285 - 336 2.4e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 934
AccB1I GGYRCC 1 cut(s) 847
AciI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 3 cut(s) 315, 363, 913
AcsI RAATTY 1 cut(s) 393
AcuI CTGAAG 1 cut(s) 532
AfiI CCNNNNNNNGG 3 cut(s) 11, 389, 922
AgsI TTSAA 3 cut(s) 31, 109, 480
AhlI ACTAGT 1 cut(s) 230
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 602
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 711
Alw21I GWGCWC 4 cut(s) 79, 144, 906, 951
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 5 cut(s) 98, 206, 661, 691, 694
AoxI GGCC 6 cut(s) 102, 243, 315, 343, 363, 913
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 393
AspS9I GGNCC 1 cut(s) 864
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 665, 779
AvaII GGWCC 1 cut(s) 864
AxyI CCTNAGG 1 cut(s) 1042
BaeGI GKGCMC 2 cut(s) 144, 850
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 906, 951
Bbv12I GWGCWC 4 cut(s) 79, 144, 906, 951
BccI CCATC 3 cut(s) 392, 684, 855
BceAI ACGGC 4 cut(s) 163, 358, 508, 881
BciT130I CCWGG 1 cut(s) 604
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 5 cut(s) 155, 231, 371, 468, 804
BfmI CTRYAG 2 cut(s) 695, 1032
BglII AGATCT 2 cut(s) 800, 964
Bme1390I CCNGG 2 cut(s) 555, 604
Bme18I GGWCC 1 cut(s) 864
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 864
BmiI GGNNCC 2 cut(s) 462, 849
BmrFI CCNGG 2 cut(s) 555, 604
BmsI GCATC 2 cut(s) 166, 709
BoxI GACNNNNGTC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 1 cut(s) 907
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 708, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 389, 922
Bse1I ACTGG 1 cut(s) 398
Bse21I CCTNAGG 1 cut(s) 1042
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 1 cut(s) 961
BseLI CCNNNNNNNGG 3 cut(s) 11, 389, 922
BseMII CTCAG 2 cut(s) 198, 1056
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 603
BseSI GKGCMC 2 cut(s) 144, 850
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 6 cut(s) 104, 245, 317, 345, 365, 915
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 4 cut(s) 79, 144, 906, 951
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 3 cut(s) 11, 389, 922
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 6 cut(s) 104, 245, 317, 345, 365, 915
Bsp1286I GDGCHC 5 cut(s) 79, 144, 850, 906, 951
Bsp143I GATC 5 cut(s) 43, 298, 460, 800, 964
BspACI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
BspANI GGCC 6 cut(s) 104, 245, 317, 345, 365, 915
BspCNI CTCAG 2 cut(s) 199, 1055
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 2 cut(s) 462, 849
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 847
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 5 cut(s) 43, 298, 460, 800, 964
BssT1I CCWWGG 1 cut(s) 907
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 5 cut(s) 74, 170, 629, 657, 1012
BstAPI GCANNNNNTGC 2 cut(s) 98, 694
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 207, 632, 1042
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 5 cut(s) 46, 301, 463, 803, 967
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 5 cut(s) 43, 298, 460, 800, 964
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
BstNI CCWGG 1 cut(s) 604
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 553, 602
BstSFI CTRYAG 2 cut(s) 695, 1032
BstSLI GKGCMC 2 cut(s) 144, 850
BstX2I RGATCY 3 cut(s) 460, 800, 964
BstYI RGATCY 3 cut(s) 460, 800, 964
BstZI CGGCCG 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 1042
BsuRI GGCC 6 cut(s) 104, 245, 317, 345, 365, 915
BtgZI GCGATG 1 cut(s) 874
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 4 cut(s) 79, 175, 204, 945
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 5 cut(s) 98, 206, 661, 691, 694
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 1 cut(s) 864
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 8 cut(s) 264, 352, 764, 796, 841, 917, 952, 980
DdeI CTNAG 3 cut(s) 207, 632, 1042
DpnI GATC 5 cut(s) 45, 300, 462, 802, 966
DpnII GATC 5 cut(s) 43, 298, 460, 800, 964
DrdI GACNNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 3 cut(s) 315, 363, 913
EagI CGGCCG 1 cut(s) 315
Ecl136II GAGCTC 2 cut(s) 904, 949
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 907
Eco24I GRGCYC 2 cut(s) 906, 951
Eco47I GGWCC 1 cut(s) 864
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 904, 949
Eco57I CTGAAG 1 cut(s) 532
Eco81I CCTNAGG 1 cut(s) 1042
EcoICRI GAGCTC 2 cut(s) 904, 949
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 602
EcoT14I CCWWGG 1 cut(s) 907
EcoT38I GRGCYC 2 cut(s) 906, 951
ErhI CCWWGG 1 cut(s) 907
FaeI CATG 8 cut(s) 267, 355, 767, 799, 844, 920, 955, 983
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 8 cut(s) 263, 351, 763, 795, 840, 916, 951, 979
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 906, 951
FspBI CTAG 5 cut(s) 155, 231, 371, 468, 804
HaeIII GGCC 6 cut(s) 104, 245, 317, 345, 365, 915
HapII CCGG 1 cut(s) 555
Hin1II CATG 8 cut(s) 267, 355, 767, 799, 844, 920, 955, 983
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 599, 664, 928
HpaII CCGG 1 cut(s) 555
HphI GGTGA 2 cut(s) 665, 779
Hpy166II GTNNAC 2 cut(s) 142, 892
Hpy188I TCNGA 5 cut(s) 36, 241, 551, 663, 828
Hpy188III TCNNGA 3 cut(s) 41, 796, 804
Hpy8I GTNNAC 2 cut(s) 142, 892
Hpy99I CGWCG 3 cut(s) 140, 149, 902
HpyAV CCTTC 2 cut(s) 115, 556
HpyCH4III ACNGT 5 cut(s) 74, 170, 629, 657, 1012
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 7 cut(s) 92, 123, 142, 221, 542, 697, 997
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
HpyF3I CTNAG 3 cut(s) 207, 632, 1042
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 8 cut(s) 267, 355, 767, 799, 844, 920, 955, 983
Kzo9I GATC 5 cut(s) 43, 298, 460, 800, 964
LmnI GCTCC 6 cut(s) 82, 437, 575, 875, 909, 946
LweI GCATC 2 cut(s) 166, 709
MaeI CTAG 5 cut(s) 155, 231, 371, 468, 804
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 170, 251, 338
MalI GATC 5 cut(s) 45, 300, 462, 802, 966
MboI GATC 5 cut(s) 43, 298, 460, 800, 964
MboII GAAGA 2 cut(s) 280, 1027
MflI RGATCY 3 cut(s) 460, 800, 964
MhlI GDGCHC 5 cut(s) 79, 144, 850, 906, 951
MluCI AATT 5 cut(s) 393, 427, 454, 490, 1048
MlyI GAGTC 4 cut(s) 32, 89, 608, 922
MmeI TCCRAC 1 cut(s) 924
MseI TTAA 2 cut(s) 609, 984
MslI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
MspA1I CMGCKG 3 cut(s) 314, 485, 691
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 2 cut(s) 555, 604
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 1 cut(s) 604
MwoI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 113
NdeII GATC 5 cut(s) 43, 298, 460, 800, 964
NlaIII CATG 8 cut(s) 267, 355, 767, 799, 844, 920, 955, 983
NlaIV GGNNCC 2 cut(s) 462, 849
NmeAIII GCCGAG 2 cut(s) 271, 391
NmuCI GTSAC 3 cut(s) 170, 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 711
PagI TCATGA 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 818
PctI GAATGC 1 cut(s) 861
PfeI GAWTC 4 cut(s) 31, 37, 375, 664
PleI GAGTC 4 cut(s) 31, 89, 607, 922
PpsI GAGTC 4 cut(s) 31, 89, 607, 922
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 906, 951
Psp6I CCWGG 1 cut(s) 602
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 2 cut(s) 462, 849
PspPI GGNCC 1 cut(s) 864
PstI CTGCAG 1 cut(s) 699
PstNI CAGNNNCTG 5 cut(s) 98, 206, 661, 691, 694
PsuI RGATCY 3 cut(s) 460, 800, 964
PvuII CAGCTG 2 cut(s) 485, 691
RseI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
SacI GAGCTC 2 cut(s) 906, 951
SaqAI TTAA 2 cut(s) 609, 984
Sau3AI GATC 5 cut(s) 43, 298, 460, 800, 964
Sau96I GGNCC 1 cut(s) 864
SchI GAGTC 4 cut(s) 32, 89, 608, 922
ScrFI CCNGG 2 cut(s) 555, 604
SduI GDGCHC 5 cut(s) 79, 144, 850, 906, 951
SfaNI GCATC 2 cut(s) 166, 709
SfcI CTRYAG 2 cut(s) 695, 1032
SinI GGWCC 1 cut(s) 864
SmiMI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 393, 427, 454, 490, 1048
SsiI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 912
SspMI CTAG 5 cut(s) 155, 231, 371, 468, 804
SstI GAGCTC 2 cut(s) 906, 951
StyD4I CCNGG 2 cut(s) 553, 602
StyI CCWWGG 1 cut(s) 907
TaaI ACNGT 5 cut(s) 74, 170, 629, 657, 1012
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 900
TasI AATT 5 cut(s) 393, 427, 454, 490, 1048
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 915
TfiI GAWTC 4 cut(s) 31, 37, 375, 664
Tru1I TTAA 2 cut(s) 609, 984
Tru9I TTAA 2 cut(s) 609, 984
TscAI CASTG 4 cut(s) 79, 175, 211, 945
TseFI GTSAC 3 cut(s) 170, 251, 338
Tsp45I GTSAC 3 cut(s) 170, 251, 338
TspDTI ATGAA 4 cut(s) 44, 290, 781, 933
TspGWI ACGGA 2 cut(s) 429, 453
TspRI CASTG 4 cut(s) 79, 175, 211, 945
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 864
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 1 cut(s) 393
XbaI TCTAGA 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 716
XspI CTAG 5 cut(s) 155, 231, 371, 468, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.