Rw7G000770
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0004135
Physical Location & Seq
Reverse (-)
622677 .. 626865
4189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000770.1

Sequence Viewer

Length: 1380 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTTACAGTGGCGATGCTGCTACTACTCCACTCGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACTAGTGCTTCGGAGGCTGAGAGTGATAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCGCAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCAGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGATCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCAGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGTCCGGTTTAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGGTCATCATCATCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGTGATGAAGATCTTATGTCCACAACAACGACAACGCATCATCAGAATTCAGCAAATGGTTTACTAAACCAAAGAGGAGGCTCAAATGCAAGTTTAAATTTAGAGCAAGATACTGAACACCCTTCTAGCAATCTGTGGGGTAACTCTTCCAGTAGAGGAGCATGGGTGCAAGCAAGTTCAAGAGATCTAAATGGCCACTCTCAACATAGAAGTCCTTCTGGAAACCTATTTCATCATCACGAGGGAAGTGATTTTGCCCAATCACGAAGTAGCTTTGTAGATCTCTCAAATGGGGACCTCATCAAAAATCCAAGCTTGGAGTTCAGCTTAGGGCGACCGGACTGGCACAGCAAAGAAGTACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

459

Amino Acids

50.54

Weight (kDa)

6.92

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 271 - 322 3.5e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 892
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 805
AciI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 870
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 3 cut(s) 315, 871, 1204
AcsI RAATTY 3 cut(s) 393, 1057, 1108
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 1 cut(s) 1371
AfiI CCNNNNNNNGG 4 cut(s) 11, 389, 880, 1005
AgsI TTSAA 3 cut(s) 31, 109, 1191
AhlI ACTAGT 1 cut(s) 230
AjiI CACGTC 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 666
Alw21I GWGCWC 4 cut(s) 79, 144, 864, 909
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 616, 646, 649
AoxI GGCC 5 cut(s) 102, 315, 343, 871, 1204
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 393, 1057, 1108
Asp700I GAANNNNTTC 1 cut(s) 1225
AspLEI GCGC 1 cut(s) 327
AspS9I GGNCC 2 cut(s) 822, 1306
AsuHPI GGTGA 3 cut(s) 620, 737, 1025
AvaII GGWCC 2 cut(s) 822, 1306
BaeGI GKGCMC 2 cut(s) 144, 808
BalI TGGCCA 1 cut(s) 1206
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 805
BanII GRGCYC 2 cut(s) 864, 909
BauI CACGAG 1 cut(s) 1250
Bbv12I GWGCWC 4 cut(s) 79, 144, 864, 909
BccI CCATC 4 cut(s) 392, 639, 813, 998
BceAI ACGGC 4 cut(s) 163, 358, 508, 839
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 6 cut(s) 155, 231, 371, 468, 762, 1137
BfmI CTRYAG 3 cut(s) 90, 650, 990
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 5 cut(s) 758, 922, 1021, 1195, 1291
BmcAI AGTACT 1 cut(s) 1371
Bme18I GGWCC 2 cut(s) 822, 1306
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 822, 1306
BmiI GGNNCC 3 cut(s) 462, 807, 1307
BmsI GCATC 3 cut(s) 166, 664, 1057
BoxI GACNNNNGTC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 1339
BsaBI GATNNNNATC 1 cut(s) 1020
BsaJI CCNNGG 1 cut(s) 865
BsaWI WCCGGW 2 cut(s) 558, 1348
BsaXI ACNNNNNCTCC 4 cut(s) 663, 693, 1161, 1191
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 389, 880, 1005
Bse1I ACTGG 3 cut(s) 398, 1161, 1358
Bse8I GATNNNNATC 1 cut(s) 1020
BseDI CCNNGG 1 cut(s) 865
BseGI GGATG 1 cut(s) 919
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 4 cut(s) 11, 389, 880, 1005
BseMII CTCAG 3 cut(s) 198, 237, 1014
BseNI ACTGG 3 cut(s) 398, 1161, 1358
BseRI GAGGAG 2 cut(s) 1101, 1182
BseSI GKGCMC 2 cut(s) 144, 808
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 2 cut(s) 318, 1349
BshFI GGCC 5 cut(s) 104, 317, 345, 873, 1206
BshNI GGYRCC 1 cut(s) 805
BsiEI CGRYCG 2 cut(s) 318, 1349
BsiHKAI GWGCWC 4 cut(s) 79, 144, 864, 909
BsiSI CCGG 2 cut(s) 559, 1349
BslFI GGGAC 1 cut(s) 1319
BslI CCNNNNNNNGG 4 cut(s) 11, 389, 880, 1005
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 1319
BsmI GAATGC 1 cut(s) 819
BsnI GGCC 5 cut(s) 104, 317, 345, 873, 1206
Bsp1286I GDGCHC 5 cut(s) 79, 144, 808, 864, 909
Bsp143I GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
BspACI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 870
BspANI GGCC 5 cut(s) 104, 317, 345, 873, 1206
BspCNI CTCAG 3 cut(s) 199, 238, 1013
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 3 cut(s) 462, 807, 1307
BspMAI CTGCAG 2 cut(s) 94, 654
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 805
BsrI ACTGG 3 cut(s) 398, 1161, 1358
BssECI CCNNGG 1 cut(s) 865
BssMI GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
BssSI CACGAG 1 cut(s) 1250
BssT1I CCWWGG 1 cut(s) 865
Bst2BI CACGAG 1 cut(s) 1250
Bst4CI ACNGT 5 cut(s) 74, 170, 584, 612, 970
Bst6I CTCTTC 1 cut(s) 1162
BstAPI GCANNNNNTGC 2 cut(s) 98, 649
BstC8I GCNNGC 2 cut(s) 309, 1182
BstDEI CTNAG 5 cut(s) 207, 246, 587, 1000, 1339
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 919
BstHHI GCGC 1 cut(s) 327
BstKTI GATC 8 cut(s) 46, 301, 463, 761, 925, 1024, 1198, 1294
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
BstMCI CGRYCG 2 cut(s) 318, 1349
BstMWI GCNNNNNNNGC 4 cut(s) 98, 242, 649, 652
BstPAI GACNNNNGTC 1 cut(s) 150
BstSFI CTRYAG 3 cut(s) 90, 650, 990
BstSLI GKGCMC 2 cut(s) 144, 808
BstX2I RGATCY 6 cut(s) 460, 758, 922, 1021, 1195, 1291
BstYI RGATCY 6 cut(s) 460, 758, 922, 1021, 1195, 1291
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 5 cut(s) 104, 317, 345, 873, 1206
BtgZI GCGATG 2 cut(s) 189, 832
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 919
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 903, 978
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 309, 1182
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 616, 646, 649
CciI TCATGA 1 cut(s) 753
CfoI GCGC 1 cut(s) 327
Cfr13I GGNCC 2 cut(s) 822, 1306
Csp6I GTAC 1 cut(s) 1370
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 9 cut(s) 264, 352, 722, 754, 799, 875, 910, 938, 1173
CviQI GTAC 1 cut(s) 1370
DdeI CTNAG 5 cut(s) 207, 246, 587, 1000, 1339
DpnI GATC 8 cut(s) 45, 300, 462, 760, 924, 1023, 1197, 1293
DpnII GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
DraI TTTAAA 1 cut(s) 1107
DrdI GACNNNNNNGTC 1 cut(s) 892
DseDI GACNNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 3 cut(s) 315, 871, 1204
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1162
EarI CTCTTC 1 cut(s) 1162
Ecl136II GAGCTC 2 cut(s) 862, 907
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 865
Eco24I GRGCYC 2 cut(s) 864, 909
Eco47I GGWCC 2 cut(s) 822, 1306
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 862, 907
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 2 cut(s) 862, 907
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 1306
EcoRI GAATTC 2 cut(s) 393, 1057
EcoT14I CCWWGG 1 cut(s) 865
EcoT38I GRGCYC 2 cut(s) 864, 909
ErhI CCWWGG 1 cut(s) 865
FaeI CATG 9 cut(s) 267, 355, 725, 757, 802, 878, 913, 941, 1176
FalI AAGNNNNNCTT 3 cut(s) 488, 520, 1356
FaqI GGGAC 1 cut(s) 1319
FatI CATG 9 cut(s) 263, 351, 721, 753, 798, 874, 909, 937, 1172
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 926
FriOI GRGCYC 2 cut(s) 864, 909
FspBI CTAG 6 cut(s) 155, 231, 371, 468, 762, 1137
GlaI GCGC 1 cut(s) 326
HaeIII GGCC 5 cut(s) 104, 317, 345, 873, 1206
HapII CCGG 2 cut(s) 559, 1349
HhaI GCGC 1 cut(s) 327
Hin1II CATG 9 cut(s) 267, 355, 725, 757, 802, 878, 913, 941, 1176
Hin6I GCGC 1 cut(s) 325
HinP1I GCGC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 497, 1324
HinfI GANTC 7 cut(s) 23, 31, 37, 95, 375, 619, 886
HpaII CCGG 2 cut(s) 559, 1349
HphI GGTGA 3 cut(s) 620, 737, 1025
Hpy166II GTNNAC 4 cut(s) 142, 850, 1032, 1073
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 618, 786, 1003, 1056
Hpy188III TCNNGA 7 cut(s) 41, 754, 762, 1191, 1230, 1250, 1275
Hpy8I GTNNAC 4 cut(s) 142, 850, 1032, 1073
Hpy99I CGWCG 3 cut(s) 140, 149, 860
HpyAV CCTTC 4 cut(s) 115, 556, 1143, 1236
HpyCH4III ACNGT 5 cut(s) 74, 170, 584, 612, 970
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 92, 123, 142, 221, 542, 652, 955, 1100, 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 242, 649, 652
HpyF3I CTNAG 5 cut(s) 207, 246, 587, 1000, 1339
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 9 cut(s) 267, 355, 725, 757, 802, 878, 913, 941, 1176
HspAI GCGC 1 cut(s) 325
Kzo9I GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
LmnI GCTCC 6 cut(s) 82, 437, 833, 867, 904, 1169
LweI GCATC 3 cut(s) 166, 664, 1057
MaeI CTAG 6 cut(s) 155, 231, 371, 468, 762, 1137
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 338, 1151
MalI GATC 8 cut(s) 45, 300, 462, 760, 924, 1023, 1197, 1293
MboI GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
MboII GAAGA 4 cut(s) 280, 985, 1031, 1149
MflI RGATCY 6 cut(s) 460, 758, 922, 1021, 1195, 1291
MhlI GDGCHC 5 cut(s) 79, 144, 808, 864, 909
MlsI TGGCCA 1 cut(s) 1206
MluCI AATT 6 cut(s) 393, 427, 454, 490, 1057, 1108
MluNI TGGCCA 1 cut(s) 1206
MlyI GAGTC 3 cut(s) 32, 89, 880
MmeI TCCRAC 1 cut(s) 882
Mox20I TGGCCA 1 cut(s) 1206
MroXI GAANNNNTTC 1 cut(s) 1225
MscI TGGCCA 1 cut(s) 1206
MseI TTAA 3 cut(s) 564, 942, 1106
MslI CAYNNNNRTG 4 cut(s) 137, 666, 720, 723
Msp20I TGGCCA 1 cut(s) 1206
MspA1I CMGCKG 3 cut(s) 314, 485, 646
MspI CCGG 2 cut(s) 559, 1349
Mva1269I GAATGC 1 cut(s) 819
MwoI GCNNNNNNNGC 4 cut(s) 98, 242, 649, 652
NdeI CATATG 1 cut(s) 113
NdeII GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
NlaIII CATG 9 cut(s) 267, 355, 725, 757, 802, 878, 913, 941, 1176
NlaIV GGNNCC 3 cut(s) 462, 807, 1307
NmuCI GTSAC 1 cut(s) 338
OliI CACNNNNGTG 2 cut(s) 137, 666
PagI TCATGA 1 cut(s) 753
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 776
PctI GAATGC 1 cut(s) 819
PdmI GAANNNNTTC 1 cut(s) 1225
PfeI GAWTC 4 cut(s) 31, 37, 375, 619
PleI GAGTC 3 cut(s) 31, 89, 880
PpsI GAGTC 3 cut(s) 31, 89, 880
PpuMI RGGWCCY 1 cut(s) 1306
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 864, 909
Psp5II RGGWCCY 1 cut(s) 1306
PspN4I GGNNCC 3 cut(s) 462, 807, 1307
PspPI GGNCC 2 cut(s) 822, 1306
PspPPI RGGWCCY 1 cut(s) 1306
PstI CTGCAG 2 cut(s) 94, 654
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 616, 646, 649
PsuI RGATCY 6 cut(s) 460, 758, 922, 1021, 1195, 1291
PvuII CAGCTG 2 cut(s) 485, 646
RsaI GTAC 1 cut(s) 1371
RsaNI GTAC 1 cut(s) 1370
RseI CAYNNNNRTG 4 cut(s) 137, 666, 720, 723
SacI GAGCTC 2 cut(s) 864, 909
SaqAI TTAA 3 cut(s) 564, 942, 1106
Sau3AI GATC 8 cut(s) 43, 298, 460, 758, 922, 1021, 1195, 1291
Sau96I GGNCC 2 cut(s) 822, 1306
ScaI AGTACT 1 cut(s) 1371
SchI GAGTC 3 cut(s) 32, 89, 880
SduI GDGCHC 5 cut(s) 79, 144, 808, 864, 909
SfaNI GCATC 3 cut(s) 166, 664, 1057
SfcI CTRYAG 3 cut(s) 90, 650, 990
SinI GGWCC 2 cut(s) 822, 1306
SmiMI CAYNNNNRTG 4 cut(s) 137, 666, 720, 723
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 6 cut(s) 393, 427, 454, 490, 1057, 1108
SsiI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 870
SspMI CTAG 6 cut(s) 155, 231, 371, 468, 762, 1137
SstI GAGCTC 2 cut(s) 864, 909
StyI CCWWGG 1 cut(s) 865
TaaI ACNGT 5 cut(s) 74, 170, 584, 612, 970
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 858
TasI AATT 6 cut(s) 393, 427, 454, 490, 1057, 1108
TatI WGTACW 1 cut(s) 1369
TauI GCSGC 5 cut(s) 104, 200, 317, 520, 873
TfiI GAWTC 4 cut(s) 31, 37, 375, 619
Tru1I TTAA 3 cut(s) 564, 942, 1106
Tru9I TTAA 3 cut(s) 564, 942, 1106
TscAI CASTG 5 cut(s) 79, 175, 211, 903, 985
TseFI GTSAC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 6 cut(s) 44, 290, 739, 891, 1032, 1232
TspGWI ACGGA 2 cut(s) 429, 453
TspRI CASTG 5 cut(s) 79, 175, 211, 903, 985
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 822, 1306
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 393, 1057, 1108
XbaI TCTAGA 1 cut(s) 761
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 671
XmnI GAANNNNTTC 1 cut(s) 1225
XspI CTAG 6 cut(s) 155, 231, 371, 468, 762, 1137
ZrmI AGTACT 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.