Rh7DG009400
MYB Family

Transcription repressor KAN1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004135
Physical Location & Seq
Reverse (-)
771570 .. 775783
4214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG009400.1

Sequence Viewer

Length: 1422 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTTACAGTGGCGATGCTGCTACTACTCCACTCGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACTAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCTCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGACAGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACACCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGATCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCTCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGCTGCTGCTGCTATGGGAGCAGGAGTAGGAGGAGGGTTTGAGTCCAGGTTTAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGGTCATCATCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAACATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGTGATGAAGATCTTATGTCCACAACAACGACAACGCATCATCAGAATTCAGCAAATGGTTTACTAAACCAAAGAGGAGGCTCAAATGCAAGTTTAACTTTAGAGCAAGATACGGAACACCCTTCTAGCAATCTGTGGGGTAACTCTTCCAGTAGAGGAGCATGGGTGCAAGCAAGTTCAAGAGATCTAAATGGCCACTCTCAACATAGAAGTCCTTCTGGAAACCTATTTCATCATCACGAGGGAAGTGATTTTGCCCAATCACGAAGTAGCTTTGTAGATCTCTCAAATGGGGACCTCATCAAAAATCCAAGCTTGGAGTTCAGCTTAGGGCGACCGGACTGGCACAGCAAAGAAGTACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

473

Amino Acids

51.58

Weight (kDa)

6.71

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 285 - 336 3.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 934
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 847
AciI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 912
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 3 cut(s) 315, 913, 1246
AcsI RAATTY 2 cut(s) 393, 1099
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 1 cut(s) 1413
AfiI CCNNNNNNNGG 4 cut(s) 11, 389, 922, 1047
AgsI TTSAA 3 cut(s) 31, 109, 1233
AhlI ACTAGT 1 cut(s) 230
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 1 cut(s) 602
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 711
Alw21I GWGCWC 4 cut(s) 79, 144, 906, 951
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
AoxI GGCC 6 cut(s) 102, 243, 315, 343, 913, 1246
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 393, 1099
Asp700I GAANNNNTTC 1 cut(s) 1267
AspS9I GGNCC 2 cut(s) 864, 1348
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 665, 779, 1067
AvaII GGWCC 2 cut(s) 864, 1348
BaeGI GKGCMC 2 cut(s) 144, 850
BalI TGGCCA 1 cut(s) 1248
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 906, 951
BauI CACGAG 1 cut(s) 1292
Bbv12I GWGCWC 4 cut(s) 79, 144, 906, 951
BccI CCATC 4 cut(s) 392, 684, 855, 1040
BceAI ACGGC 3 cut(s) 163, 358, 881
BciT130I CCWGG 1 cut(s) 604
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 6 cut(s) 155, 231, 371, 468, 804, 1179
BfmI CTRYAG 3 cut(s) 90, 695, 1032
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 5 cut(s) 800, 964, 1063, 1237, 1333
BmcAI AGTACT 1 cut(s) 1413
Bme1390I CCNGG 2 cut(s) 555, 604
Bme18I GGWCC 2 cut(s) 864, 1348
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 864, 1348
BmiI GGNNCC 3 cut(s) 462, 849, 1349
BmrFI CCNGG 2 cut(s) 555, 604
BmsI GCATC 3 cut(s) 166, 709, 1099
BoxI GACNNNNGTC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 1381
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 1062
BsaJI CCNNGG 1 cut(s) 907
BsaWI WCCGGW 1 cut(s) 1390
BsaXI ACNNNNNCTCC 8 cut(s) 505, 535, 567, 597, 708, 738, 1203, 1233
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 389, 922, 1047
Bse1I ACTGG 3 cut(s) 398, 1203, 1400
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 1 cut(s) 604
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 4 cut(s) 11, 389, 922, 1047
BseMII CTCAG 2 cut(s) 198, 1056
BseNI ACTGG 3 cut(s) 398, 1203, 1400
BseRI GAGGAG 3 cut(s) 603, 1143, 1224
BseSI GKGCMC 2 cut(s) 144, 850
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 2 cut(s) 318, 1391
BshFI GGCC 6 cut(s) 104, 245, 317, 345, 915, 1248
BshNI GGYRCC 1 cut(s) 847
BsiEI CGRYCG 2 cut(s) 318, 1391
BsiHKAI GWGCWC 4 cut(s) 79, 144, 906, 951
BsiSI CCGG 2 cut(s) 555, 1391
BslFI GGGAC 1 cut(s) 1361
BslI CCNNNNNNNGG 4 cut(s) 11, 389, 922, 1047
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 1361
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 6 cut(s) 104, 245, 317, 345, 915, 1248
Bsp1286I GDGCHC 5 cut(s) 79, 144, 850, 906, 951
Bsp143I GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
BspACI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 912
BspANI GGCC 6 cut(s) 104, 245, 317, 345, 915, 1248
BspCNI CTCAG 2 cut(s) 199, 1055
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 3 cut(s) 462, 849, 1349
BspMAI CTGCAG 2 cut(s) 94, 699
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 847
BsrI ACTGG 3 cut(s) 398, 1203, 1400
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
BssSI CACGAG 1 cut(s) 1292
BssT1I CCWWGG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 1292
Bst2UI CCWGG 1 cut(s) 604
Bst4CI ACNGT 5 cut(s) 74, 170, 629, 657, 1012
Bst6I CTCTTC 1 cut(s) 1204
BstAPI GCANNNNNTGC 2 cut(s) 98, 694
BstC8I GCNNGC 2 cut(s) 309, 1224
BstDEI CTNAG 4 cut(s) 207, 632, 1042, 1381
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 8 cut(s) 46, 301, 463, 803, 967, 1066, 1240, 1336
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
BstMCI CGRYCG 2 cut(s) 318, 1391
BstMWI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
BstNI CCWGG 1 cut(s) 604
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 553, 602
BstSFI CTRYAG 3 cut(s) 90, 695, 1032
BstSLI GKGCMC 2 cut(s) 144, 850
BstX2I RGATCY 6 cut(s) 460, 800, 964, 1063, 1237, 1333
BstYI RGATCY 6 cut(s) 460, 800, 964, 1063, 1237, 1333
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 6 cut(s) 104, 245, 317, 345, 915, 1248
BtgZI GCGATG 2 cut(s) 189, 874
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 961
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 945, 1020
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 309, 1224
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
CciI TCATGA 1 cut(s) 795
Cfr13I GGNCC 2 cut(s) 864, 1348
Csp6I GTAC 1 cut(s) 1412
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 9 cut(s) 264, 352, 764, 796, 841, 917, 952, 980, 1215
CviQI GTAC 1 cut(s) 1412
DdeI CTNAG 4 cut(s) 207, 632, 1042, 1381
DpnI GATC 8 cut(s) 45, 300, 462, 802, 966, 1065, 1239, 1335
DpnII GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
DrdI GACNNNNNNGTC 1 cut(s) 934
DseDI GACNNNNNNGTC 1 cut(s) 934
EaeI YGGCCR 3 cut(s) 315, 913, 1246
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 1204
Ecl136II GAGCTC 2 cut(s) 904, 949
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 907
Eco24I GRGCYC 2 cut(s) 906, 951
Eco47I GGWCC 2 cut(s) 864, 1348
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 904, 949
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 2 cut(s) 904, 949
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 1348
EcoRI GAATTC 2 cut(s) 393, 1099
EcoRII CCWGG 1 cut(s) 602
EcoT14I CCWWGG 1 cut(s) 907
EcoT38I GRGCYC 2 cut(s) 906, 951
ErhI CCWWGG 1 cut(s) 907
FaeI CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
FalI AAGNNNNNCTT 5 cut(s) 488, 520, 1135, 1167, 1398
FaqI GGGAC 1 cut(s) 1361
FatI CATG 9 cut(s) 263, 351, 763, 795, 840, 916, 951, 979, 1214
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 906, 951
FspBI CTAG 6 cut(s) 155, 231, 371, 468, 804, 1179
HaeIII GGCC 6 cut(s) 104, 245, 317, 345, 915, 1248
HapII CCGG 2 cut(s) 555, 1391
Hin1II CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
HindIII AAGCTT 2 cut(s) 497, 1366
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 599, 664, 928
HpaII CCGG 2 cut(s) 555, 1391
HphI GGTGA 3 cut(s) 665, 779, 1067
Hpy166II GTNNAC 4 cut(s) 142, 892, 1074, 1115
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 663, 828, 1045, 1098
Hpy188III TCNNGA 8 cut(s) 41, 294, 796, 804, 1233, 1272, 1292, 1317
Hpy8I GTNNAC 4 cut(s) 142, 892, 1074, 1115
Hpy99I CGWCG 3 cut(s) 140, 149, 902
HpyAV CCTTC 4 cut(s) 115, 556, 1185, 1278
HpyCH4III ACNGT 5 cut(s) 74, 170, 629, 657, 1012
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 92, 123, 142, 221, 542, 697, 997, 1142, 1222
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
HpyF3I CTNAG 4 cut(s) 207, 632, 1042, 1381
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
Kzo9I GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
LmnI GCTCC 7 cut(s) 82, 437, 575, 875, 909, 946, 1211
LweI GCATC 3 cut(s) 166, 709, 1099
MaeI CTAG 6 cut(s) 155, 231, 371, 468, 804, 1179
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 251, 338, 361, 1193
MalI GATC 8 cut(s) 45, 300, 462, 802, 966, 1065, 1239, 1335
MboI GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
MboII GAAGA 4 cut(s) 280, 1027, 1073, 1191
MflI RGATCY 6 cut(s) 460, 800, 964, 1063, 1237, 1333
MhlI GDGCHC 5 cut(s) 79, 144, 850, 906, 951
MlsI TGGCCA 1 cut(s) 1248
MluCI AATT 5 cut(s) 393, 427, 454, 490, 1099
MluNI TGGCCA 1 cut(s) 1248
MlyI GAGTC 4 cut(s) 32, 89, 608, 922
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 1248
MroXI GAANNNNTTC 1 cut(s) 1267
MscI TGGCCA 1 cut(s) 1248
MseI TTAA 3 cut(s) 609, 984, 1148
MslI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
Msp20I TGGCCA 1 cut(s) 1248
MspA1I CMGCKG 3 cut(s) 314, 485, 691
MspI CCGG 2 cut(s) 555, 1391
MspR9I CCNGG 2 cut(s) 555, 604
Mva1269I GAATGC 1 cut(s) 861
MvaI CCWGG 1 cut(s) 604
MwoI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 113
NdeII GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
NlaIII CATG 9 cut(s) 267, 355, 767, 799, 844, 920, 955, 983, 1218
NlaIV GGNNCC 3 cut(s) 462, 849, 1349
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 3 cut(s) 251, 338, 361
OliI CACNNNNGTG 2 cut(s) 137, 711
PagI TCATGA 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 818
PctI GAATGC 1 cut(s) 861
PdmI GAANNNNTTC 1 cut(s) 1267
PfeI GAWTC 4 cut(s) 31, 37, 375, 664
PleI GAGTC 4 cut(s) 31, 89, 607, 922
PpsI GAGTC 4 cut(s) 31, 89, 607, 922
PpuMI RGGWCCY 1 cut(s) 1348
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 906, 951
Psp5II RGGWCCY 1 cut(s) 1348
Psp6I CCWGG 1 cut(s) 602
PspGI CCWGG 1 cut(s) 602
PspN4I GGNNCC 3 cut(s) 462, 849, 1349
PspPI GGNCC 2 cut(s) 864, 1348
PspPPI RGGWCCY 1 cut(s) 1348
PstI CTGCAG 2 cut(s) 94, 699
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
PsuI RGATCY 6 cut(s) 460, 800, 964, 1063, 1237, 1333
PvuII CAGCTG 2 cut(s) 485, 691
RsaI GTAC 1 cut(s) 1413
RsaNI GTAC 1 cut(s) 1412
RseI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
SacI GAGCTC 2 cut(s) 906, 951
SaqAI TTAA 3 cut(s) 609, 984, 1148
Sau3AI GATC 8 cut(s) 43, 298, 460, 800, 964, 1063, 1237, 1333
Sau96I GGNCC 2 cut(s) 864, 1348
ScaI AGTACT 1 cut(s) 1413
SchI GAGTC 4 cut(s) 32, 89, 608, 922
ScrFI CCNGG 2 cut(s) 555, 604
SduI GDGCHC 5 cut(s) 79, 144, 850, 906, 951
SfaNI GCATC 3 cut(s) 166, 709, 1099
SfcI CTRYAG 3 cut(s) 90, 695, 1032
SinI GGWCC 2 cut(s) 864, 1348
SmiMI CAYNNNNRTG 4 cut(s) 137, 711, 762, 765
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 5 cut(s) 393, 427, 454, 490, 1099
SsiI CCGC 8 cut(s) 101, 118, 150, 198, 314, 417, 518, 912
SspMI CTAG 6 cut(s) 155, 231, 371, 468, 804, 1179
SstI GAGCTC 2 cut(s) 906, 951
StyD4I CCNGG 2 cut(s) 553, 602
StyI CCWWGG 1 cut(s) 907
TaaI ACNGT 5 cut(s) 74, 170, 629, 657, 1012
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 900
TasI AATT 5 cut(s) 393, 427, 454, 490, 1099
TatI WGTACW 1 cut(s) 1411
TauI GCSGC 5 cut(s) 104, 200, 317, 520, 915
TfiI GAWTC 4 cut(s) 31, 37, 375, 664
Tru1I TTAA 3 cut(s) 609, 984, 1148
Tru9I TTAA 3 cut(s) 609, 984, 1148
TscAI CASTG 5 cut(s) 79, 175, 211, 945, 1027
TseFI GTSAC 3 cut(s) 251, 338, 361
Tsp45I GTSAC 3 cut(s) 251, 338, 361
TspDTI ATGAA 6 cut(s) 44, 290, 781, 933, 1074, 1274
TspGWI ACGGA 4 cut(s) 429, 453, 513, 1181
TspRI CASTG 5 cut(s) 79, 175, 211, 945, 1027
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 864, 1348
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 2 cut(s) 393, 1099
XbaI TCTAGA 1 cut(s) 803
XcmI CCANNNNNNNNNTGG 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 1267
XspI CTAG 6 cut(s) 155, 231, 371, 468, 804, 1179
ZrmI AGTACT 1 cut(s) 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.