Rmu_sc0006214.1_g000011
MYB Family

Transcription repressor KAN1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006214.1
Physical Location & Seq
Forward (+)
38212 .. 42553
4342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006214.1_g000011.1.cds

Sequence Viewer

Length: 1428 bp
atgcctcataaagggattttggagtctttgaatccgattcctgatctttcacttcatataagccctccaaacagtgctccaaacgaacctgcagactctgcggccttcaacatatggcggtgcagagacaacaccgacgtgcacgacggcggtctagtaaaatcttacagtggcgatgctgctactactccactcgccgcagacactgagctttcccttgcaaatcccactagtgcttcggaggccgagagtgacagcaactcatggaagatgatgaaatcgagctatttcgcaagagatcagcagcaagcagcggccgaaaagcacaacaacataagtcacggcctttccatgcttgatgtggcagagctaggaatcaaacccatcaaaggaattccagtttataacaccactcccgcagcagctaattgctcctttccgttttctccacctaatttggatccgtctagggatatttcagcagctgctaattccaagctttgcttctaccaaacgccgccgccgtatctatctcctgctgcacccttcagacccggtgctgctgctgctatgggagcaggagtaggaggagggtttgagtcccggtttaacgggataactatggacagtctaagagtgcctcaacaacacttacagtatctgaatcatcatcaccatcaacaacagcagctgctgcagcatcaacaccaatgtggagttggggttgggattgggattggaggtcatcatcatcatcatcatcatcatcatggtgatttctctaatactaacgggttcatcatgagatctagatttacgcccaagtcgtatcagagtaagaggaacatgagggcacccagaatgcgatggaccagctccctccacgctcgttttgttcacgccgtcgagctccttggcggccatgaaagggcgactccaaagtcagtgttggagctcatggatgtcaaagatctcacacttgctcatgttaagagccatttgcagatgtatagaactgtgaagaacactgacaaacctgtagcttcctcagatgggtctggtgatgaagatcttatgtccacaacaacgacaacgcatcatcagaattcagcaaatggtttactaaaccaaagaggaggctcaaatgcaagtttaaatttagagcaagatacggaacacccttctagcaatctgtggggtaactcttccagtagaggagcatgggtgcaagcaagttcaagagatctaaatggccactctcaacatagaagtccttctggaaacctatttcatcatcacgagggaagtgattttgcccaatcacgaagtagctttgtagatctctcaaatggggacctcatcaaaaatccaagcttggagttcagcttagggcgaccggactggcacagcaaagaagtacttgactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

51.82

Weight (kDa)

6.73

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 940
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 853
AciI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
AclWI GGATC 2 cut(s) 455, 468
AcoI YGGCCR 3 cut(s) 315, 919, 1252
AcsI RAATTY 3 cut(s) 393, 1105, 1156
AcuI CTGAAG 1 cut(s) 532
AfaI GTAC 1 cut(s) 1419
AfiI CCNNNNNNNGG 4 cut(s) 11, 389, 928, 1053
AgsI TTSAA 3 cut(s) 31, 109, 1239
AhlI ACTAGT 1 cut(s) 230
AjiI CACGTC 1 cut(s) 139
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 711
Alw21I GWGCWC 4 cut(s) 79, 144, 912, 957
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 2 cut(s) 455, 468
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
AoxI GGCC 6 cut(s) 102, 243, 315, 343, 919, 1252
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 393, 1105, 1156
Asp700I GAANNNNTTC 1 cut(s) 1273
AspS9I GGNCC 2 cut(s) 870, 1354
AsuC2I CCSGG 2 cut(s) 555, 604
AsuHPI GGTGA 3 cut(s) 665, 785, 1073
AvaII GGWCC 2 cut(s) 870, 1354
BaeGI GKGCMC 2 cut(s) 144, 856
BalI TGGCCA 1 cut(s) 1254
BamHI GGATCC 1 cut(s) 460
BanI GGYRCC 1 cut(s) 853
BanII GRGCYC 2 cut(s) 912, 957
BauI CACGAG 1 cut(s) 1298
Bbv12I GWGCWC 4 cut(s) 79, 144, 912, 957
BccI CCATC 4 cut(s) 392, 684, 861, 1046
BceAI ACGGC 4 cut(s) 163, 358, 508, 887
BcnI CCSGG 2 cut(s) 555, 604
BcoDI GTCTC 1 cut(s) 120
BcuI ACTAGT 1 cut(s) 230
BfaI CTAG 6 cut(s) 155, 231, 371, 468, 810, 1185
BfmI CTRYAG 3 cut(s) 90, 695, 1038
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 5 cut(s) 806, 970, 1069, 1243, 1339
BmcAI AGTACT 1 cut(s) 1419
Bme1390I CCNGG 2 cut(s) 555, 604
Bme18I GGWCC 2 cut(s) 870, 1354
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 870, 1354
BmiI GGNNCC 3 cut(s) 462, 855, 1355
BmrFI CCNGG 2 cut(s) 555, 604
BmsI GCATC 3 cut(s) 166, 709, 1105
BoxI GACNNNNGTC 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 1387
BpuMI CCSGG 2 cut(s) 555, 604
BsaBI GATNNNNATC 1 cut(s) 1068
BsaJI CCNNGG 1 cut(s) 913
BsaWI WCCGGW 1 cut(s) 1396
BsaXI ACNNNNNCTCC 6 cut(s) 567, 597, 708, 738, 1209, 1239
Bsc4I CCNNNNNNNGG 4 cut(s) 11, 389, 928, 1053
Bse1I ACTGG 3 cut(s) 398, 1209, 1406
Bse8I GATNNNNATC 1 cut(s) 1068
BseDI CCNNGG 1 cut(s) 913
BseGI GGATG 1 cut(s) 967
BseJI GATNNNNATC 1 cut(s) 1068
BseLI CCNNNNNNNGG 4 cut(s) 11, 389, 928, 1053
BseMII CTCAG 2 cut(s) 198, 1062
BseNI ACTGG 3 cut(s) 398, 1209, 1406
BseRI GAGGAG 3 cut(s) 603, 1149, 1230
BseSI GKGCMC 2 cut(s) 144, 856
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 2 cut(s) 318, 1397
BshFI GGCC 6 cut(s) 104, 245, 317, 345, 921, 1254
BshNI GGYRCC 1 cut(s) 853
BsiEI CGRYCG 2 cut(s) 318, 1397
BsiHKAI GWGCWC 4 cut(s) 79, 144, 912, 957
BsiSI CCGG 3 cut(s) 555, 604, 1397
BslFI GGGAC 2 cut(s) 586, 1367
BslI CCNNNNNNNGG 4 cut(s) 11, 389, 928, 1053
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 2 cut(s) 586, 1367
BsmI GAATGC 1 cut(s) 867
BsnI GGCC 6 cut(s) 104, 245, 317, 345, 921, 1254
Bsp1286I GDGCHC 5 cut(s) 79, 144, 856, 912, 957
Bsp143I GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
BspACI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
BspANI GGCC 6 cut(s) 104, 245, 317, 345, 921, 1254
BspCNI CTCAG 2 cut(s) 199, 1061
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 3 cut(s) 462, 855, 1355
BspMAI CTGCAG 2 cut(s) 94, 699
BspMI ACCTGC 1 cut(s) 97
BspPI GGATC 2 cut(s) 455, 468
BspT107I GGYRCC 1 cut(s) 853
BsrI ACTGG 3 cut(s) 398, 1209, 1406
BssECI CCNNGG 1 cut(s) 913
BssMI GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
BssSI CACGAG 1 cut(s) 1298
BssT1I CCWWGG 1 cut(s) 913
Bst2BI CACGAG 1 cut(s) 1298
Bst4CI ACNGT 5 cut(s) 74, 170, 629, 657, 1018
Bst6I CTCTTC 1 cut(s) 1210
BstAPI GCANNNNNTGC 2 cut(s) 98, 694
BstC8I GCNNGC 2 cut(s) 309, 1230
BstDEI CTNAG 4 cut(s) 207, 632, 1048, 1387
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 967
BstKTI GATC 8 cut(s) 46, 301, 463, 809, 973, 1072, 1246, 1342
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
BstMCI CGRYCG 2 cut(s) 318, 1397
BstMWI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 553, 602
BstSFI CTRYAG 3 cut(s) 90, 695, 1038
BstSLI GKGCMC 2 cut(s) 144, 856
BstX2I RGATCY 6 cut(s) 460, 806, 970, 1069, 1243, 1339
BstYI RGATCY 6 cut(s) 460, 806, 970, 1069, 1243, 1339
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 6 cut(s) 104, 245, 317, 345, 921, 1254
BtgZI GCGATG 2 cut(s) 189, 880
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 967
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 951, 1026
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 309, 1230
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
CciI TCATGA 1 cut(s) 801
Cfr13I GGNCC 2 cut(s) 870, 1354
Csp6I GTAC 1 cut(s) 1418
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 9 cut(s) 264, 352, 770, 802, 847, 923, 958, 986, 1221
CviQI GTAC 1 cut(s) 1418
DdeI CTNAG 4 cut(s) 207, 632, 1048, 1387
DpnI GATC 8 cut(s) 45, 300, 462, 808, 972, 1071, 1245, 1341
DpnII GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
DraI TTTAAA 1 cut(s) 1155
DrdI GACNNNNNNGTC 1 cut(s) 940
DseDI GACNNNNNNGTC 1 cut(s) 940
EaeI YGGCCR 3 cut(s) 315, 919, 1252
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1210
EarI CTCTTC 1 cut(s) 1210
Ecl136II GAGCTC 2 cut(s) 910, 955
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 913
Eco24I GRGCYC 2 cut(s) 912, 957
Eco47I GGWCC 2 cut(s) 870, 1354
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 2 cut(s) 910, 955
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 2 cut(s) 910, 955
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 1354
EcoRI GAATTC 2 cut(s) 393, 1105
EcoT14I CCWWGG 1 cut(s) 913
EcoT38I GRGCYC 2 cut(s) 912, 957
ErhI CCWWGG 1 cut(s) 913
FaeI CATG 9 cut(s) 267, 355, 773, 805, 850, 926, 961, 989, 1224
FalI AAGNNNNNCTT 3 cut(s) 488, 520, 1404
FaqI GGGAC 2 cut(s) 586, 1367
FatI CATG 9 cut(s) 263, 351, 769, 801, 846, 922, 957, 985, 1220
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 974
FriOI GRGCYC 2 cut(s) 912, 957
FspBI CTAG 6 cut(s) 155, 231, 371, 468, 810, 1185
HaeIII GGCC 6 cut(s) 104, 245, 317, 345, 921, 1254
HapII CCGG 3 cut(s) 555, 604, 1397
Hin1II CATG 9 cut(s) 267, 355, 773, 805, 850, 926, 961, 989, 1224
HindIII AAGCTT 2 cut(s) 497, 1372
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 599, 664, 934
HpaII CCGG 3 cut(s) 555, 604, 1397
HphI GGTGA 3 cut(s) 665, 785, 1073
Hpy166II GTNNAC 4 cut(s) 142, 898, 1080, 1121
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 663, 834, 1051, 1104
Hpy188III TCNNGA 7 cut(s) 41, 802, 810, 1239, 1278, 1298, 1323
Hpy8I GTNNAC 4 cut(s) 142, 898, 1080, 1121
Hpy99I CGWCG 3 cut(s) 140, 149, 908
HpyAV CCTTC 4 cut(s) 115, 556, 1191, 1284
HpyCH4III ACNGT 5 cut(s) 74, 170, 629, 657, 1018
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 9 cut(s) 92, 123, 142, 221, 542, 697, 1003, 1148, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
HpyF3I CTNAG 4 cut(s) 207, 632, 1048, 1387
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 9 cut(s) 267, 355, 773, 805, 850, 926, 961, 989, 1224
Kzo9I GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
LmnI GCTCC 7 cut(s) 82, 437, 575, 881, 915, 952, 1217
LweI GCATC 3 cut(s) 166, 709, 1105
MaeI CTAG 6 cut(s) 155, 231, 371, 468, 810, 1185
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 3 cut(s) 251, 338, 1199
MalI GATC 8 cut(s) 45, 300, 462, 808, 972, 1071, 1245, 1341
MboI GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
MboII GAAGA 4 cut(s) 280, 1033, 1079, 1197
MflI RGATCY 6 cut(s) 460, 806, 970, 1069, 1243, 1339
MhlI GDGCHC 5 cut(s) 79, 144, 856, 912, 957
MlsI TGGCCA 1 cut(s) 1254
MluCI AATT 6 cut(s) 393, 427, 454, 490, 1105, 1156
MluNI TGGCCA 1 cut(s) 1254
MlyI GAGTC 4 cut(s) 32, 89, 608, 928
MmeI TCCRAC 1 cut(s) 930
Mox20I TGGCCA 1 cut(s) 1254
MroXI GAANNNNTTC 1 cut(s) 1273
MscI TGGCCA 1 cut(s) 1254
MseI TTAA 3 cut(s) 609, 990, 1154
MslI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
Msp20I TGGCCA 1 cut(s) 1254
MspA1I CMGCKG 3 cut(s) 314, 485, 691
MspI CCGG 3 cut(s) 555, 604, 1397
MspR9I CCNGG 2 cut(s) 555, 604
Mva1269I GAATGC 1 cut(s) 867
MwoI GCNNNNNNNGC 6 cut(s) 98, 242, 566, 575, 694, 697
NciI CCSGG 2 cut(s) 555, 604
NdeI CATATG 1 cut(s) 113
NdeII GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
NlaIII CATG 9 cut(s) 267, 355, 773, 805, 850, 926, 961, 989, 1224
NlaIV GGNNCC 3 cut(s) 462, 855, 1355
NmeAIII GCCGAG 1 cut(s) 271
NmuCI GTSAC 2 cut(s) 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 711
PagI TCATGA 1 cut(s) 801
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 824
PctI GAATGC 1 cut(s) 867
PdmI GAANNNNTTC 1 cut(s) 1273
PfeI GAWTC 4 cut(s) 31, 37, 375, 664
PleI GAGTC 4 cut(s) 31, 89, 607, 928
PpsI GAGTC 4 cut(s) 31, 89, 607, 928
PpuMI RGGWCCY 1 cut(s) 1354
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 2 cut(s) 912, 957
Psp5II RGGWCCY 1 cut(s) 1354
PspN4I GGNNCC 3 cut(s) 462, 855, 1355
PspPI GGNCC 2 cut(s) 870, 1354
PspPPI RGGWCCY 1 cut(s) 1354
PstI CTGCAG 2 cut(s) 94, 699
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
PsuI RGATCY 6 cut(s) 460, 806, 970, 1069, 1243, 1339
PvuII CAGCTG 2 cut(s) 485, 691
RsaI GTAC 1 cut(s) 1419
RsaNI GTAC 1 cut(s) 1418
RseI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
SacI GAGCTC 2 cut(s) 912, 957
SaqAI TTAA 3 cut(s) 609, 990, 1154
Sau3AI GATC 8 cut(s) 43, 298, 460, 806, 970, 1069, 1243, 1339
Sau96I GGNCC 2 cut(s) 870, 1354
ScaI AGTACT 1 cut(s) 1419
SchI GAGTC 4 cut(s) 32, 89, 608, 928
ScrFI CCNGG 2 cut(s) 555, 604
SduI GDGCHC 5 cut(s) 79, 144, 856, 912, 957
SfaNI GCATC 3 cut(s) 166, 709, 1105
SfcI CTRYAG 3 cut(s) 90, 695, 1038
SinI GGWCC 2 cut(s) 870, 1354
SmiMI CAYNNNNRTG 4 cut(s) 137, 711, 768, 771
SpeI ACTAGT 1 cut(s) 230
Sse9I AATT 6 cut(s) 393, 427, 454, 490, 1105, 1156
SsiI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 918
SspMI CTAG 6 cut(s) 155, 231, 371, 468, 810, 1185
SstI GAGCTC 2 cut(s) 912, 957
StyD4I CCNGG 2 cut(s) 553, 602
StyI CCWWGG 1 cut(s) 913
TaaI ACNGT 5 cut(s) 74, 170, 629, 657, 1018
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 906
TasI AATT 6 cut(s) 393, 427, 454, 490, 1105, 1156
TatI WGTACW 1 cut(s) 1417
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 921
TfiI GAWTC 4 cut(s) 31, 37, 375, 664
Tru1I TTAA 3 cut(s) 609, 990, 1154
Tru9I TTAA 3 cut(s) 609, 990, 1154
TscAI CASTG 5 cut(s) 79, 175, 211, 951, 1033
TseFI GTSAC 2 cut(s) 251, 338
Tsp45I GTSAC 2 cut(s) 251, 338
TspDTI ATGAA 6 cut(s) 44, 290, 787, 939, 1080, 1280
TspGWI ACGGA 3 cut(s) 429, 453, 1187
TspRI CASTG 5 cut(s) 79, 175, 211, 951, 1033
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 870, 1354
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 393, 1105, 1156
XbaI TCTAGA 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 716
XmnI GAANNNNTTC 1 cut(s) 1273
XspI CTAG 6 cut(s) 155, 231, 371, 468, 810, 1185
ZrmI AGTACT 1 cut(s) 1419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.