MD17G1261500.v1.1
MYB Family

transcription

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
32230007 .. 32238164
8158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1261500.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGCCCTTGGAAGGGATTTTCAGAGAACCCTCTTCAGCCACAACTACGACTAGTTCTTGTCCAATTCCTGATCTTTCTCTTCACATTAGTCCTCCCAACACTTCCTCTAATTCATCATCAATTTACAATACCACCATTAGTGAAACCCAAAATCCCACTACTAGTAATTCCCAAGCTCACACTGAGCTATCCCTAGGGCGATGCTTCACCGGCGGAGCTCACGAGCAAGAACCACCACAAAACCCTTATCAACAACAAAGTTTTCATCTTCACCGTTCCAACAGTCATTTAAGCCACTTAAATCACGGTGTTTCGCTGCTTGATGTCTCGTCATCAGAGGGTTTAAGGCCGATTAAAGGGATTCCGGTCTATCATCAGAACCGCTCATTCCCCTTCTTGCCTATGGACAATATGATCACAAGAGATCATCACAAGGATTCAAGGATGTGCTTCTACCCAAAACCTCCTCCACCTTCTTCCTATAACCATCTTTCTTTTCCTTCAGCTGCCTCATGTTCCCCTAATACGCCGTCTGCGCCTTATTTCGGAGGAGGAGCCGGCGGTTTGGATCCCATGTCGAGATTTACCAGGTTCTCATCCGTGGATGTGTTTAAATCTAACAATCAACTGCACCACCACCATCATCTTCATCAACTTCATCATCACAATCACTATGGTATTGGAGGGGTTGGACCAATGTCTGAGGGTATCATGAGGTCGAGGTTTTTGCCAAAGCTGCCGACAAAGCGGAGTATGAGAGCTCCGAGGATGCGATGGACAAGCACTCTCCATGCCAGATTTGTTCATGCTGTTGAGTTTCTTGGTGGTCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTCAAGGATCTCACTCTAGCTCATGTGAAGAGCCATTTACAGATGTATCGAACTGTTAAGACCACCGACAAGCCTGCAGCTTCTTCAGGGCAATCCGATGGATCTGGCGAGGACGACATCCTCTCTCCGATTTGCAGCGCAACGGATCAGCATGCCCTACGCAATACTCAGCAATTTCCAGAGCAAAGTGGACCGTCCGATCGGTCTGTGCAACCAGAGGCGGACTACACTTCCAGTACCACTCTTTGGAGTAACTCTTCAAGTCGAGAGGCGTTTCCACATACTAATTCTCATGACATGGACGGGCAAACACCAGCAGTATCCTCCCAATTACAGAAAATATCTGGTCATAAAATTCAGGAATGTGATTCAAACAACCTGAAGAGCTATCTGGGATCGAACTTTGATACCAGACATCCAAGCTTGGAGTTCACGCTAGGCAGACCGGACTGGAATGGCAAAGCACATGAGTGA

Protein Analysis

448

Amino Acids

49.46

Weight (kDa)

7.24

Isoelectric Point (pI)

56.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1116
AccBSI CCGCTC 1 cut(s) 384
AciI CCGC 5 cut(s) 213, 382, 561, 748, 1091
AclWI GGATC 6 cut(s) 563, 576, 885, 979, 1023, 1273
AcsI RAATTY 1 cut(s) 1224
AcuI CTGAAG 4 cut(s) 18, 486, 939, 1271
AfaI GTAC 1 cut(s) 1108
AfiI CCNNNNNNNGG 5 cut(s) 11, 12, 356, 545, 1116
AgsI TTSAA 3 cut(s) 441, 1131, 1242
AhlI ACTAGT 2 cut(s) 50, 161
AjnI CCWGG 1 cut(s) 587
AleI CACNNNNGTG 1 cut(s) 1339
Alw21I GWGCWC 3 cut(s) 220, 763, 864
Alw26I GTCTC 1 cut(s) 331
AlwI GGATC 6 cut(s) 563, 576, 885, 979, 1023, 1273
AoxI GGCC 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 316, 506, 736, 947, 1005
ApoI RAATTY 1 cut(s) 1224
AspA2I CCTAGG 1 cut(s) 193
AspLEI GCGC 2 cut(s) 538, 1010
AspS9I GGNCC 2 cut(s) 692, 1061
AsuHPI GGTGA 2 cut(s) 199, 263
AvaII GGWCC 2 cut(s) 692, 1061
AvrII CCTAGG 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 899, 932
BamHI GGATCC 1 cut(s) 568
BanII GRGCYC 3 cut(s) 220, 763, 864
BauI CACGAG 1 cut(s) 221
Bbv12I GWGCWC 3 cut(s) 220, 763, 864
BbvI GCAGC 5 cut(s) 303, 493, 723, 959, 1017
BccI CCATC 4 cut(s) 495, 648, 768, 962
BceAI ACGGC 1 cut(s) 514
BcgI CGANNNNNNTGC 4 cut(s) 709, 743, 926, 960
BciT130I CCWGG 1 cut(s) 589
BciVI GTATCC 1 cut(s) 1201
BclI TGATCA 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 331
BcuI ACTAGT 2 cut(s) 50, 161
BfaI CTAG 5 cut(s) 51, 162, 194, 887, 1307
BfmI CTRYAG 1 cut(s) 945
BfuI GTATCC 1 cut(s) 1201
BisI GCNGC 5 cut(s) 317, 507, 737, 948, 1006
BlnI CCTAGG 1 cut(s) 193
BlsI GCNGC 5 cut(s) 318, 508, 738, 949, 1007
Bme1390I CCNGG 1 cut(s) 589
Bme18I GGWCC 2 cut(s) 692, 1061
BmgT120I GGNCC 2 cut(s) 692, 1061
BmiI GGNNCC 2 cut(s) 556, 570
BmrFI CCNGG 1 cut(s) 589
BmsI GCATC 2 cut(s) 191, 759
BoxI GACNNNNGTC 1 cut(s) 697
BpuEI CTTGAG 1 cut(s) 878
BsaJI CCNNGG 4 cut(s) 6, 193, 600, 764
BsaWI WCCGGW 2 cut(s) 364, 1315
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 12, 356, 545, 1116
Bse118I RCCGGY 2 cut(s) 209, 557
Bse1I ACTGG 2 cut(s) 1104, 1325
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 4 cut(s) 6, 193, 600, 764
BseGI GGATG 7 cut(s) 450, 596, 610, 774, 874, 987, 1285
BseLI CCNNNNNNNGG 5 cut(s) 11, 12, 356, 545, 1116
BseMII CTCAG 3 cut(s) 174, 693, 1052
BseNI ACTGG 2 cut(s) 1104, 1325
BseRI GAGGAG 3 cut(s) 456, 564, 567
BseXI GCAGC 5 cut(s) 303, 493, 723, 959, 1017
BsgI GTGCAG 1 cut(s) 614
Bsh1285I CGRYCG 1 cut(s) 1072
BshFI GGCC 1 cut(s) 349
BsiEI CGRYCG 1 cut(s) 1072
BsiHKAI GWGCWC 3 cut(s) 220, 763, 864
BsiSI CCGG 4 cut(s) 210, 365, 558, 1316
BslI CCNNNNNNNGG 5 cut(s) 11, 12, 356, 545, 1116
BsmAI GTCTC 1 cut(s) 331
BsnI GGCC 1 cut(s) 349
Bsp1286I GDGCHC 3 cut(s) 220, 763, 864
Bsp143I GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
BspACI CCGC 5 cut(s) 213, 382, 561, 748, 1091
BspANI GGCC 1 cut(s) 349
BspCNI CTCAG 3 cut(s) 175, 694, 1051
BspHI TCATGA 3 cut(s) 711, 829, 1162
BspLI GGNNCC 2 cut(s) 556, 570
BspMAI CTGCAG 1 cut(s) 949
BspPI GGATC 6 cut(s) 563, 576, 885, 979, 1023, 1273
BspQI GCTCTTC 2 cut(s) 893, 1247
BsrBI CCGCTC 1 cut(s) 384
BsrFI RCCGGY 2 cut(s) 209, 557
BsrI ACTGG 2 cut(s) 1104, 1325
BssAI RCCGGY 2 cut(s) 209, 557
BssECI CCNNGG 4 cut(s) 6, 193, 600, 764
BssMI GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
BssSI CACGAG 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 6, 193
Bst2BI CACGAG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 589
Bst4CI ACNGT 5 cut(s) 275, 284, 308, 925, 1065
Bst6I CTCTTC 5 cut(s) 37, 84, 893, 1132, 1247
BstC8I GCNNGC 3 cut(s) 559, 945, 1023
BstDEI CTNAG 3 cut(s) 183, 702, 1038
BstDSI CCRYGG 1 cut(s) 600
BstF5I GGATG 7 cut(s) 450, 596, 610, 774, 874, 987, 1285
BstHHI GCGC 2 cut(s) 538, 1010
BstKTI GATC 9 cut(s) 73, 417, 427, 571, 880, 974, 1018, 1072, 1268
BstMAI GTCTC 1 cut(s) 331
BstMBI GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
BstMCI CGRYCG 1 cut(s) 1072
BstMWI GCNNNNNNNGC 4 cut(s) 210, 535, 736, 745
BstNI CCWGG 1 cut(s) 589
BstNSI RCATGY 1 cut(s) 1025
BstPAI GACNNNNGTC 1 cut(s) 697
BstSCI CCNGG 1 cut(s) 587
BstSFI CTRYAG 1 cut(s) 945
BstV1I GCAGC 5 cut(s) 303, 493, 723, 959, 1017
BstX2I RGATCY 3 cut(s) 568, 877, 971
BstYI RGATCY 3 cut(s) 568, 877, 971
BsuI GTATCC 1 cut(s) 1201
BsuRI GGCC 1 cut(s) 349
BtgI CCRYGG 1 cut(s) 600
BtgZI GCGATG 2 cut(s) 214, 787
BtsCI GGATG 7 cut(s) 450, 596, 610, 774, 874, 987, 1285
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 3 cut(s) 559, 945, 1023
CciI TCATGA 3 cut(s) 711, 829, 1162
CfoI GCGC 2 cut(s) 538, 1010
Cfr10I RCCGGY 2 cut(s) 209, 557
Cfr13I GGNCC 2 cut(s) 692, 1061
CsiI ACCWGGT 1 cut(s) 587
Csp6I GTAC 1 cut(s) 1107
CviQI GTAC 1 cut(s) 1107
DdeI CTNAG 3 cut(s) 183, 702, 1038
DpnI GATC 9 cut(s) 72, 416, 426, 570, 879, 973, 1017, 1071, 1267
DpnII GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
DraI TTTAAA 1 cut(s) 613
Eam1104I CTCTTC 5 cut(s) 37, 84, 893, 1132, 1247
EarI CTCTTC 5 cut(s) 37, 84, 893, 1132, 1247
EciI GGCGGA 2 cut(s) 228, 1106
Ecl136II GAGCTC 3 cut(s) 218, 761, 862
Eco130I CCWWGG 2 cut(s) 6, 193
Eco24I GRGCYC 3 cut(s) 220, 763, 864
Eco47I GGWCC 2 cut(s) 692, 1061
Eco53kI GAGCTC 3 cut(s) 218, 761, 862
Eco57I CTGAAG 4 cut(s) 18, 486, 939, 1271
EcoICRI GAGCTC 3 cut(s) 218, 761, 862
EcoRII CCWGG 1 cut(s) 587
EcoT14I CCWWGG 2 cut(s) 6, 193
EcoT38I GRGCYC 3 cut(s) 220, 763, 864
ErhI CCWWGG 2 cut(s) 6, 193
FbaI TGATCA 1 cut(s) 414
Fnu4HI GCNGC 5 cut(s) 317, 507, 737, 948, 1006
FokI GGATG 7 cut(s) 457, 583, 617, 781, 881, 974, 1272
FriOI GRGCYC 3 cut(s) 220, 763, 864
Fsp4HI GCNGC 5 cut(s) 317, 507, 737, 948, 1006
FspBI CTAG 5 cut(s) 51, 162, 194, 887, 1307
GlaI GCGC 2 cut(s) 537, 1009
GluI GCNGC 5 cut(s) 317, 507, 737, 948, 1006
HaeIII GGCC 1 cut(s) 349
HapII CCGG 4 cut(s) 210, 365, 558, 1316
HhaI GCGC 2 cut(s) 538, 1010
Hin6I GCGC 2 cut(s) 536, 1008
HinP1I GCGC 2 cut(s) 536, 1008
HindIII AAGCTT 1 cut(s) 1291
HinfI GANTC 3 cut(s) 361, 437, 1238
HpaII CCGG 4 cut(s) 210, 365, 558, 1316
HphI GGTGA 2 cut(s) 199, 263
Hpy166II GTNNAC 2 cut(s) 1061, 1302
Hpy188I TCNGA 9 cut(s) 23, 337, 378, 548, 703, 765, 967, 999, 1069
Hpy8I GTNNAC 2 cut(s) 1061, 1302
HpyAV CCTTC 4 cut(s) 5, 403, 483, 510
HpyCH4III ACNGT 5 cut(s) 275, 284, 308, 925, 1065
HpyCH4V TGCA 4 cut(s) 631, 947, 1005, 1081
HpyF10VI GCNNNNNNNGC 4 cut(s) 210, 535, 736, 745
HpyF3I CTNAG 3 cut(s) 183, 702, 1038
HspAI GCGC 2 cut(s) 536, 1008
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 414
Kzo9I GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
LguI GCTCTTC 2 cut(s) 893, 1247
LmnI GCTCC 3 cut(s) 215, 554, 766
Lsp1109I GCAGC 5 cut(s) 303, 493, 723, 959, 1017
LweI GCATC 2 cut(s) 191, 759
MabI ACCWGGT 1 cut(s) 587
MaeI CTAG 5 cut(s) 51, 162, 194, 887, 1307
MaeIII GTNAC 1 cut(s) 1121
MalI GATC 9 cut(s) 72, 416, 426, 570, 879, 973, 1017, 1071, 1267
MbiI CCGCTC 1 cut(s) 384
MboI GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
MboII GAAGA 9 cut(s) 24, 71, 260, 468, 638, 910, 945, 1119, 1264
MflI RGATCY 3 cut(s) 568, 877, 971
MhlI GDGCHC 3 cut(s) 220, 763, 864
MluCI AATT 8 cut(s) 63, 109, 120, 166, 1043, 1156, 1199, 1224
MmeI TCCRAC 2 cut(s) 303, 670
MroNI GCCGGC 1 cut(s) 557
MseI TTAA 6 cut(s) 290, 299, 344, 354, 612, 927
MslI CAYNNNNRTG 1 cut(s) 1339
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 4 cut(s) 210, 365, 558, 1316
MspR9I CCNGG 1 cut(s) 589
MvaI CCWGG 1 cut(s) 589
MwoI GCNNNNNNNGC 4 cut(s) 210, 535, 736, 745
NaeI GCCGGC 1 cut(s) 559
NdeII GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
NgoMIV GCCGGC 1 cut(s) 557
NlaIV GGNNCC 2 cut(s) 556, 570
NspI RCATGY 1 cut(s) 1025
OliI CACNNNNGTG 1 cut(s) 1339
PaeI GCATGC 1 cut(s) 1025
PagI TCATGA 3 cut(s) 711, 829, 1162
PciSI GCTCTTC 2 cut(s) 893, 1247
PdiI GCCGGC 1 cut(s) 559
PfeI GAWTC 3 cut(s) 361, 437, 1238
PflMI CCANNNNNTGG 1 cut(s) 1116
PkrI GCNGC 5 cut(s) 318, 508, 738, 949, 1007
Ple19I CGATCG 1 cut(s) 1072
PshAI GACNNNNGTC 1 cut(s) 697
Psp124BI GAGCTC 3 cut(s) 220, 763, 864
Psp6I CCWGG 1 cut(s) 587
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 2 cut(s) 556, 570
PspPI GGNCC 2 cut(s) 692, 1061
PstI CTGCAG 1 cut(s) 949
PsuI RGATCY 3 cut(s) 568, 877, 971
PvuI CGATCG 1 cut(s) 1072
PvuII CAGCTG 1 cut(s) 506
RsaI GTAC 1 cut(s) 1108
RsaNI GTAC 1 cut(s) 1107
RseI CAYNNNNRTG 1 cut(s) 1339
SacI GAGCTC 3 cut(s) 220, 763, 864
SapI GCTCTTC 2 cut(s) 893, 1247
SaqAI TTAA 6 cut(s) 290, 299, 344, 354, 612, 927
SatI GCNGC 5 cut(s) 317, 507, 737, 948, 1006
Sau3AI GATC 9 cut(s) 70, 414, 424, 568, 877, 971, 1015, 1069, 1265
Sau96I GGNCC 2 cut(s) 692, 1061
ScrFI CCNGG 1 cut(s) 589
SduI GDGCHC 3 cut(s) 220, 763, 864
SexAI ACCWGGT 1 cut(s) 587
SfaNI GCATC 2 cut(s) 191, 759
SfcI CTRYAG 1 cut(s) 945
SgrAI CRCCGGYG 1 cut(s) 209
SinI GGWCC 2 cut(s) 692, 1061
SmiMI CAYNNNNRTG 1 cut(s) 1339
SmlI CTYRAG 1 cut(s) 857
SmoI CTYRAG 1 cut(s) 857
SpeI ACTAGT 2 cut(s) 50, 161
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 8 cut(s) 63, 109, 120, 166, 1043, 1156, 1199, 1224
SsiI CCGC 5 cut(s) 213, 382, 561, 748, 1091
SspMI CTAG 5 cut(s) 51, 162, 194, 887, 1307
SstI GAGCTC 3 cut(s) 220, 763, 864
StyD4I CCNGG 1 cut(s) 587
StyI CCWWGG 2 cut(s) 6, 193
TaaI ACNGT 5 cut(s) 275, 284, 308, 925, 1065
TaqI TCGA 5 cut(s) 578, 719, 919, 1135, 1268
TaqII GACCGA 1 cut(s) 1062
TasI AATT 8 cut(s) 63, 109, 120, 166, 1043, 1156, 1199, 1224
TfiI GAWTC 3 cut(s) 361, 437, 1238
Tru1I TTAA 6 cut(s) 290, 299, 344, 354, 612, 927
Tru9I TTAA 6 cut(s) 290, 299, 344, 354, 612, 927
TscAI CASTG 1 cut(s) 187
TseI GCWGC 5 cut(s) 316, 506, 736, 947, 1005
TspDTI ATGAA 6 cut(s) 102, 254, 638, 647, 794, 846
TspGWI ACGGA 2 cut(s) 589, 1028
TspRI CASTG 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 692, 1061
XapI RAATTY 1 cut(s) 1224
XceI RCATGY 1 cut(s) 1025
XmaJI CCTAGG 1 cut(s) 193
XspI CTAG 5 cut(s) 51, 162, 194, 887, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.