Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004135

Physical Location & Seq

Genomic Coordinates Reverse (-)

33976172 .. 33983487

Gene Structure 7316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1265400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGCCCTTGGAAGGGATTTTCATAGAACCCTCTACAACCAGAACTACTAGTTCTCAAATTCCTGATCTTTCTCTTCATATTAGTCCTCCCAACACTACTTCCTCTAATTCATCATCAATTTTCAATAGTACGACCACTAATGAACCCCAAAATCCCACTACCCAAGCTCACACTGAGCTATCCCTAGGGCGATGCTTCACCGGCGGAGCTCACGAACAAGAACCCCCACAAAACCCATATCAACGACAAAGTTTTCATCTTCACAGTTCCAACAGTCATTTAAGCCACTTAAATCATGGCGTTTCGCTGCTTGATGTCTCATCATCGGAGGGTTTAAGGCCGATTAAAGGGATTCCGGTTTATCATCAGAACCGTTCATTCCCTTTCTTGCCTATGGACAATATTATCACAAGAGATCATCACAAGGATTCCAAGATGTGCTTTTACCCAAGACCTCCTCCACCTTCCTTTAACCATCCTTCTTTTCCTTCAGCTGCCTCCCATAACACCCAGTCTACACCTTATTTCGGAGGAGGAGGAGCCACCGGCTTGGAGCCCATGTCAAGATTTAACGGGTTCTCATCAGTGGATGCGTTTAAATCAAACAACCAACTGCACCACCACCACCATCTTCATCATCACAATCAGTATGGAATTGGAGGAGTTGGACCTATTTCTGAGGGTTCTCATCATGGTATTATGAGATCGAGATTCTTGCCAAAGCTACCGACAAAGCGGAGTATGAGAGCTCCGAGGATGCGATGGACAAGCACTCTCCATGGTAGATTTGTTCATGCTGTTGAGCATCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGAATGTCAAGGATCTCACTCTAGCTCATGTCAAGAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGGGCAATCGGATGGATCTGGCGAGGACGACATTCTCTCTCCGATTAGCAGCGCAACGGATCATCATGGACTACACAATACTCAACAGTTTCCGGAGCAACGAGGACTGTGTGATCAGTCTGTGAGACCAGACGTGGACTACACTTCCAGTACCACTCTTTGGAGTAACTCTTCAAGTATTAGAGAGGCGTTTCCACATGCTAATTCTCCTGACATGGGCGGGCAAATACCAGCAGTATCATCCCAACTACAGAAAATGTCTGGTCATAAAATTCAGGAATGTGATTCAGACAACCTGAAGAGCTATTTGGGATCTAATTTTGATACCAGAAATCCAAGCTTAGAATTCACGTTAGGCAGACCGGACTGGAATGGCAAAGCACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010051 GO:0010158 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

445

Amino Acids

49.01

Weight (kDa)

7.27

Isoelectric Point (pI)

54.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	252 - 303	7.4e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16560
fragaria_vesca	FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780
malus_domestica	MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1
prunus_persica	Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1
pyrus_communis	pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200
rosa_chinensis	RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811
rosa_laevigata	RLG00000005502
rosa_multiflora	Rmu_sc0006214.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275540
rosa_rugosa	Rorug06G0409500 Rorug06G0409500 Rorug06G0409500
rosa_samantha	Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400
rosa_wichuraiana	Rw7G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1104
AccI	GTMKAC	1 cut(s)	515
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	3 cut(s)	204, 736, 1164
AclWI	GGATC	4 cut(s)	873, 967, 1011, 1264
AcoI	YGGCCR	1 cut(s)	814
AcsI	RAATTY	3 cut(s)	57, 1215, 1289
AcuI	CTGAAG	3 cut(s)	474, 927, 1262
AfaI	GTAC	2 cut(s)	130, 1096
AfiI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 527, 1104, 1160
AgsI	TTSAA	2 cut(s)	124, 1119
AhlI	ACTAGT	1 cut(s)	47
AjiI	CACGTC	1 cut(s)	1078
AjuI	GAANNNNNNNTTGG	2 cut(s)	1235, 1267
Alw21I	GWGCWC	3 cut(s)	211, 751, 852
Alw26I	GTCTC	2 cut(s)	322, 1063
AlwI	GGATC	4 cut(s)	873, 967, 1011, 1264
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	2 cut(s)	338, 814
ApeKI	GCWGC	4 cut(s)	307, 494, 935, 993
ApoI	RAATTY	3 cut(s)	57, 1215, 1289
AspA2I	CCTAGG	1 cut(s)	184
AspLEI	GCGC	1 cut(s)	998
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	668
AvrII	CCTAGG	1 cut(s)	184
BaeI	ACNNNNGTAYC	2 cut(s)	887, 920
BalI	TGGCCA	1 cut(s)	816
BanII	GRGCYC	4 cut(s)	211, 558, 751, 852
Bbv12I	GWGCWC	3 cut(s)	211, 751, 852
BbvI	GCAGC	4 cut(s)	294, 481, 947, 1005
BccI	CCATC	4 cut(s)	483, 636, 756, 950
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BclI	TGATCA	1 cut(s)	1057
BcoDI	GTCTC	2 cut(s)	322, 1063
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	3 cut(s)	48, 185, 875
BfmI	CTRYAG	2 cut(s)	933, 1193
BisI	GCNGC	4 cut(s)	308, 495, 936, 994
BlnI	CCTAGG	1 cut(s)	184
BlsI	GCNGC	4 cut(s)	309, 496, 937, 995
Bme18I	GGWCC	1 cut(s)	668
BmgBI	CACGTC	1 cut(s)	1078
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	2 cut(s)	541, 555
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	4 cut(s)	182, 580, 747, 814
BmuI	ACTGGG	1 cut(s)	505
BpuEI	CTTGAG	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	1063
BsaJI	CCNNGG	4 cut(s)	6, 184, 752, 778
BsaWI	WCCGGW	3 cut(s)	355, 1036, 1306
BsaXI	ACNNNNNCTCC	2 cut(s)	545, 575
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 527, 1104, 1160
Bse118I	RCCGGY	2 cut(s)	200, 545
Bse1I	ACTGG	3 cut(s)	511, 1092, 1316
BseAI	TCCGGA	1 cut(s)	1036
BseDI	CCNNGG	4 cut(s)	6, 184, 752, 778
BseGI	GGATG	5 cut(s)	475, 595, 762, 961, 1184
BseLI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 527, 1104, 1160
BseMII	CTCAG	2 cut(s)	165, 669
BseNI	ACTGG	3 cut(s)	511, 1092, 1316
BseRI	GAGGAG	5 cut(s)	447, 546, 549, 552, 675
BseXI	GCAGC	4 cut(s)	294, 481, 947, 1005
BsgI	GTGCAG	1 cut(s)	599
BshFI	GGCC	2 cut(s)	340, 816
BsiHKAI	GWGCWC	3 cut(s)	211, 751, 852
BsiSI	CCGG	5 cut(s)	201, 356, 546, 1037, 1307
BslI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 527, 1104, 1160
BsmAI	GTCTC	2 cut(s)	322, 1063
BsnI	GGCC	2 cut(s)	340, 816
Bso31I	GGTCTC	1 cut(s)	1063
Bsp1286I	GDGCHC	4 cut(s)	211, 558, 751, 852
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
Bsp19I	CCATGG	1 cut(s)	778
BspACI	CCGC	3 cut(s)	204, 736, 1164
BspANI	GGCC	2 cut(s)	340, 816
BspCNI	CTCAG	2 cut(s)	166, 670
BspEI	TCCGGA	1 cut(s)	1036
BspHI	TCATGA	1 cut(s)	852
BspLI	GGNNCC	2 cut(s)	541, 555
BspMAI	CTGCAG	1 cut(s)	937
BspPI	GGATC	4 cut(s)	873, 967, 1011, 1264
BspQI	GCTCTTC	1 cut(s)	1238
BspTNI	GGTCTC	1 cut(s)	1063
BsrFI	RCCGGY	2 cut(s)	200, 545
BsrI	ACTGG	3 cut(s)	511, 1092, 1316
BssAI	RCCGGY	2 cut(s)	200, 545
BssECI	CCNNGG	4 cut(s)	6, 184, 752, 778
BssMI	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
BssT1I	CCWWGG	3 cut(s)	6, 184, 778
Bst4CI	ACNGT	6 cut(s)	266, 275, 374, 913, 1032, 1053
Bst6I	CTCTTC	3 cut(s)	78, 1120, 1238
BstC8I	GCNNGC	2 cut(s)	933, 1166
BstDEI	CTNAG	3 cut(s)	174, 678, 1285
BstDSI	CCRYGG	1 cut(s)	778
BstF5I	GGATG	5 cut(s)	475, 595, 762, 961, 1184
BstHHI	GCGC	1 cut(s)	998
BstKTI	GATC	8 cut(s)	67, 418, 707, 868, 962, 1006, 1060, 1259
BstMAI	GTCTC	2 cut(s)	322, 1063
BstMBI	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNSI	RCATGY	1 cut(s)	1145
BstSFI	CTRYAG	2 cut(s)	933, 1193
BstV1I	GCAGC	4 cut(s)	294, 481, 947, 1005
BstX2I	RGATCY	3 cut(s)	865, 959, 1256
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	3 cut(s)	865, 959, 1256
BsuRI	GGCC	2 cut(s)	340, 816
BtgI	CCRYGG	1 cut(s)	778
BtgZI	GCGATG	2 cut(s)	205, 775
BtrI	CACGTC	1 cut(s)	1078
BtsCI	GGATG	5 cut(s)	475, 595, 762, 961, 1184
BtsIMutI	CAGTG	3 cut(s)	171, 591, 921
Cac8I	GCNNGC	2 cut(s)	933, 1166
CciI	TCATGA	1 cut(s)	852
CfoI	GCGC	1 cut(s)	998
Cfr10I	RCCGGY	2 cut(s)	200, 545
Cfr13I	GGNCC	1 cut(s)	668
Csp6I	GTAC	2 cut(s)	129, 1095
CviQI	GTAC	2 cut(s)	129, 1095
DdeI	CTNAG	3 cut(s)	174, 678, 1285
DpnI	GATC	8 cut(s)	66, 417, 706, 867, 961, 1005, 1059, 1258
DpnII	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
DraI	TTTAAA	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	814
Eam1104I	CTCTTC	3 cut(s)	78, 1120, 1238
EarI	CTCTTC	3 cut(s)	78, 1120, 1238
EciI	GGCGGA	1 cut(s)	219
Ecl136II	GAGCTC	3 cut(s)	209, 749, 850
Eco130I	CCWWGG	3 cut(s)	6, 184, 778
Eco24I	GRGCYC	4 cut(s)	211, 558, 751, 852
Eco31I	GGTCTC	1 cut(s)	1063
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	3 cut(s)	209, 749, 850
Eco57I	CTGAAG	3 cut(s)	474, 927, 1262
EcoICRI	GAGCTC	3 cut(s)	209, 749, 850
EcoRI	GAATTC	1 cut(s)	1289
EcoT14I	CCWWGG	3 cut(s)	6, 184, 778
EcoT38I	GRGCYC	4 cut(s)	211, 558, 751, 852
ErhI	CCWWGG	3 cut(s)	6, 184, 778
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FauI	CCCGC	1 cut(s)	1157
FbaI	TGATCA	1 cut(s)	1057
FblI	GTMKAC	1 cut(s)	515
Fnu4HI	GCNGC	4 cut(s)	308, 495, 936, 994
FokI	GGATG	5 cut(s)	462, 602, 769, 968, 1171
FriOI	GRGCYC	4 cut(s)	211, 558, 751, 852
Fsp4HI	GCNGC	4 cut(s)	308, 495, 936, 994
FspBI	CTAG	3 cut(s)	48, 185, 875
GlaI	GCGC	1 cut(s)	997
GluI	GCNGC	4 cut(s)	308, 495, 936, 994
HaeIII	GGCC	2 cut(s)	340, 816
HapII	CCGG	5 cut(s)	201, 356, 546, 1037, 1307
HhaI	GCGC	1 cut(s)	998
Hin6I	GCGC	1 cut(s)	996
HinP1I	GCGC	1 cut(s)	996
HindIII	AAGCTT	1 cut(s)	1282
HinfI	GANTC	4 cut(s)	352, 428, 711, 1229
HpaII	CCGG	5 cut(s)	201, 356, 546, 1037, 1307
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	516, 1081
Hpy188I	TCNGA	8 cut(s)	328, 369, 530, 679, 753, 955, 987, 1234
Hpy8I	GTNNAC	2 cut(s)	516, 1081
HpyAV	CCTTC	4 cut(s)	5, 474, 489, 498
HpyCH4III	ACNGT	6 cut(s)	266, 275, 374, 913, 1032, 1053
HpyCH4IV	ACGT	2 cut(s)	1077, 1295
HpyCH4V	TGCA	2 cut(s)	616, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	3 cut(s)	174, 678, 1285
HpySE526I	ACGT	2 cut(s)	1077, 1295
HspAI	GCGC	1 cut(s)	996
Kpn2I	TCCGGA	1 cut(s)	1036
Ksp22I	TGATCA	1 cut(s)	1057
Kzo9I	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
LguI	GCTCTTC	1 cut(s)	1238
LmnI	GCTCC	5 cut(s)	206, 539, 553, 754, 1039
Lsp1109I	GCAGC	4 cut(s)	294, 481, 947, 1005
LweI	GCATC	4 cut(s)	182, 580, 747, 814
MaeI	CTAG	3 cut(s)	48, 185, 875
MaeII	ACGT	2 cut(s)	1077, 1295
MaeIII	GTNAC	1 cut(s)	1109
MalI	GATC	8 cut(s)	66, 417, 706, 867, 961, 1005, 1059, 1258
MboI	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
MboII	GAAGA	6 cut(s)	65, 251, 623, 933, 1107, 1255
MflI	RGATCY	3 cut(s)	865, 959, 1256
MhlI	GDGCHC	4 cut(s)	211, 558, 751, 852
MlsI	TGGCCA	1 cut(s)	816
MluCI	AATT	8 cut(s)	57, 106, 117, 654, 1147, 1215, 1261, 1289
MluNI	TGGCCA	1 cut(s)	816
MmeI	TCCRAC	2 cut(s)	294, 646
Mox20I	TGGCCA	1 cut(s)	816
MroI	TCCGGA	1 cut(s)	1036
MscI	TGGCCA	1 cut(s)	816
MseI	TTAA	8 cut(s)	281, 290, 335, 345, 471, 570, 597, 915
MslI	CAYNNNNRTG	1 cut(s)	810
Msp20I	TGGCCA	1 cut(s)	816
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	5 cut(s)	201, 356, 546, 1037, 1307
MwoI	GCNNNNNNNGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	778
NdeII	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
NlaIV	GGNNCC	2 cut(s)	541, 555
NspI	RCATGY	1 cut(s)	1145
PagI	TCATGA	1 cut(s)	852
PciSI	GCTCTTC	1 cut(s)	1238
PfeI	GAWTC	4 cut(s)	352, 428, 711, 1229
PflMI	CCANNNNNTGG	1 cut(s)	1104
PkrI	GCNGC	4 cut(s)	309, 496, 937, 995
Psp124BI	GAGCTC	3 cut(s)	211, 751, 852
PspN4I	GGNNCC	2 cut(s)	541, 555
PspPI	GGNCC	1 cut(s)	668
PstI	CTGCAG	1 cut(s)	937
PsuI	RGATCY	3 cut(s)	865, 959, 1256
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	2 cut(s)	130, 1096
RsaNI	GTAC	2 cut(s)	129, 1095
RseI	CAYNNNNRTG	1 cut(s)	810
SacI	GAGCTC	3 cut(s)	211, 751, 852
SapI	GCTCTTC	1 cut(s)	1238
SaqAI	TTAA	8 cut(s)	281, 290, 335, 345, 471, 570, 597, 915
SatI	GCNGC	4 cut(s)	308, 495, 936, 994
Sau3AI	GATC	8 cut(s)	64, 415, 704, 865, 959, 1003, 1057, 1256
Sau96I	GGNCC	1 cut(s)	668
SduI	GDGCHC	4 cut(s)	211, 558, 751, 852
SfaNI	GCATC	4 cut(s)	182, 580, 747, 814
SfcI	CTRYAG	2 cut(s)	933, 1193
SgrAI	CRCCGGYG	1 cut(s)	200
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	845
SmoI	CTYRAG	1 cut(s)	845
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	8 cut(s)	57, 106, 117, 654, 1147, 1215, 1261, 1289
SsiI	CCGC	3 cut(s)	204, 736, 1164
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	48, 185, 875
SstI	GAGCTC	3 cut(s)	211, 751, 852
StyI	CCWWGG	3 cut(s)	6, 184, 778
TaaI	ACNGT	6 cut(s)	266, 275, 374, 913, 1032, 1053
TaiI	ACGT	2 cut(s)	1080, 1298
TaqI	TCGA	2 cut(s)	707, 907
TasI	AATT	8 cut(s)	57, 106, 117, 654, 1147, 1215, 1261, 1289
TfiI	GAWTC	4 cut(s)	352, 428, 711, 1229
Tru1I	TTAA	8 cut(s)	281, 290, 335, 345, 471, 570, 597, 915
Tru9I	TTAA	8 cut(s)	281, 290, 335, 345, 471, 570, 597, 915
TscAI	CASTG	3 cut(s)	178, 591, 928
TseI	GCWGC	4 cut(s)	307, 494, 935, 993
TspGWI	ACGGA	1 cut(s)	1016
TspRI	CASTG	3 cut(s)	178, 591, 928
Van91I	CCANNNNNTGG	1 cut(s)	1104
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	3 cut(s)	57, 1215, 1289
XceI	RCATGY	1 cut(s)	1145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XmaJI	CCTAGG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	515
XspI	CTAG	3 cut(s)	48, 185, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.