Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004135

Physical Location & Seq

Genomic Coordinates Reverse (-)

18288828 .. 18295555

Gene Structure 6728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G163500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCCCTTGGAAGGGATTTTCATTGAACCATCTTCAACAACTACTTCTCCACTTCCCGATCTTTCCCTTCACATTAGTCCTCCAAACACTTCCTCCTCCTCTTCATCAATTTTCAATACCACTTCTGGTGAACCCCAAATCTCCACCACTAATTCCCAAGCACACACTGAGCTCTCTCTAGGGCGACGCTTCACCGGTGGAGCTCATGAAGAACCACCACAAAACCCTTATCATCATCATCAACAACAAAGTCTTCCTCTTTACCGTTCTAGCAATCATCTAAGTCACATAAACAATGGCGTTTCGCTACTCGATGTGTCATCATCGGAGGGTTTGAGGCCGATTAAAGGGATTCCGGTCTATCAAAACCGTCCATTCCCTTTTTTGCCGACGGAAAATATGATTCCAAGGGATCATCCCAAGGATTCCAAGATGTGCTTCTACCAAAGGCCTCCGCCTTCCTATAATCTTCCTTCTTTGCCTTCTGCCTCATGCTCCTCAAATACGCCGTCTACGCCTTATTTTGGAGGAGGCTTGGATCCTATGTCAAGGTTTAATGGGTTCTCATCAATGGATCCCTTCAAATCCAACAACCACTTGCACCACCACCATCATCTTCATCATCTTCATCACAATCAGTATGGAATTGGAGGAGTTGGACCAATTTCTGAGGCTTCCCATCATGGTATCATGAGATCGAGGTTTTTGCCGAAGCTACCGACAAAACGAAGCATGAGAGCTCCGAGAATGCGGTGGACAAGCACCCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTCCTTGAGCTCATGGATGTCAAGGATCTCACACTAGCTCATGTCAAAAGCCATTTACAGATGTATCGAACTGTTAAGACCACTGACAAGCCTGCAGCTTCTTCAGACGGATCTGGTGAGGACGACATTCTCTCTCCAATTGGCAGTGCCACTGATCTTCATGGCCTGCGCAGTCCTCATCAATTTCCAGAGCAACGTGGACCGTCCGATCGGTCCTCGGTGCAGCCAGACCTCGACTACACTTCCAGCACCACTCTTTGGAGTAACTCTTCAAGTAGTAGAGAGGCGTTTCCACATACTAGTTCTCATGACATGGACGGGCTAACACCAGTATCTTCCCAATTGCAGAAAATATCTGGTCATCAAATTCAGGAATGTGAATCAACAACTCAACTGAAGAGCTATTTGGGATCTAATTTTGAGACCAGAAACCCGAGCTTGGAGTTCACGTTAGGCAGACCGGACTGGAATGGCAAACCACATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0001708 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0009956 GO:0009987 GO:0010051 GO:0010158 GO:0010229 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

440

Amino Acids

48.57

Weight (kDa)

7.05

Isoelectric Point (pI)

59.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16560
fragaria_vesca	FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780 FvH4_5g17780
malus_domestica	MD06G1233700.v1.1 MD09G1265400.v1.1 MD14G1240500.v1.1 MD17G1261500.v1.1
prunus_persica	Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.3G163500_v2.0.a1 Prupe.5G238100_v2.0.a1
pyrus_communis	pycom06g20830 pycom09g17910 pycom14g20200 pycom17g26200
rosa_chinensis	RchiOBHm_Chr7g0177801 RchiOBHm_Chr7g0177811
rosa_laevigata	RLG00000005502
rosa_multiflora	Rmu_sc0006214.1_g000011
rosa_roxburghii	Rroxscaffold_3G00275540
rosa_rugosa	Rorug06G0409500 Rorug06G0409500 Rorug06G0409500
rosa_samantha	Rh7AG009300 Rh7BG009400 Rh7CG009500 Rh7DG009400
rosa_wichuraiana	Rw7G000770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	1089
AccI	GTMKAC	1 cut(s)	512
AciI	CCGC	2 cut(s)	455, 751
AclWI	GGATC	8 cut(s)	420, 533, 546, 569, 582, 864, 949, 1249
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	1197
AcuI	CTGAAG	2 cut(s)	918, 1247
AfiI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 524, 1089, 1270
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	26, 36, 115, 583, 1104
AhlI	ACTAGT	1 cut(s)	1130
AjuI	GAANNNNNNNTTGG	4 cut(s)	422, 454, 1220, 1252
Alw21I	GWGCWC	4 cut(s)	174, 205, 742, 843
Alw26I	GTCTC	1 cut(s)	1247
AlwI	GGATC	8 cut(s)	420, 533, 546, 569, 582, 864, 949, 1249
Ama87I	CYCGRG	1 cut(s)	1264
AoxI	GGCC	4 cut(s)	338, 449, 805, 994
ApeKI	GCWGC	2 cut(s)	926, 1054
ApoI	RAATTY	1 cut(s)	1197
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AsiGI	ACCGGT	1 cut(s)	194
AspLEI	GCGC	1 cut(s)	1002
AspS9I	GGNCC	3 cut(s)	659, 1031, 1044
AsuHPI	GGTGA	3 cut(s)	140, 184, 959
AvaI	CYCGRG	1 cut(s)	1264
AvaII	GGWCC	3 cut(s)	659, 1031, 1044
BaeI	ACNNNNGTAYC	4 cut(s)	878, 911, 1146, 1179
BalI	TGGCCA	1 cut(s)	807
BamHI	GGATCC	2 cut(s)	538, 574
BanII	GRGCYC	4 cut(s)	174, 205, 742, 843
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	4 cut(s)	174, 205, 742, 843
BbvI	GCAGC	2 cut(s)	938, 1066
BccI	CCATC	3 cut(s)	37, 618, 687
BceAI	ACGGC	1 cut(s)	493
BcgI	CGANNNNNNTGC	2 cut(s)	688, 722
BcoDI	GTCTC	1 cut(s)	1247
BcuI	ACTAGT	1 cut(s)	1130
BfaI	CTAG	5 cut(s)	179, 270, 774, 866, 1131
BfmI	CTRYAG	1 cut(s)	924
BisI	GCNGC	2 cut(s)	927, 1055
BlsI	GCNGC	2 cut(s)	928, 1056
Bme18I	GGWCC	3 cut(s)	659, 1031, 1044
BmeT110I	CYCGRG	1 cut(s)	1264
BmgT120I	GGNCC	3 cut(s)	659, 1031, 1044
BmiI	GGNNCC	2 cut(s)	540, 576
BpiI	GAAGAC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	857
BsaI	GGTCTC	1 cut(s)	1247
BsaJI	CCNNGG	4 cut(s)	6, 407, 420, 1047
BsaWI	WCCGGW	3 cut(s)	194, 355, 1291
BsaXI	ACNNNNNCTCC	6 cut(s)	31, 61, 77, 107, 1265, 1295
Bsc4I	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 524, 1089, 1270
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	1160, 1301
BseDI	CCNNGG	4 cut(s)	6, 407, 420, 1047
BseGI	GGATG	2 cut(s)	415, 853
BseLI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 524, 1089, 1270
BseMII	CTCAG	2 cut(s)	159, 660
BseNI	ACTGG	2 cut(s)	1160, 1301
BseRI	GAGGAG	5 cut(s)	85, 88, 487, 543, 666
BseXI	GCAGC	2 cut(s)	938, 1066
BsgI	GTGCAG	1 cut(s)	1073
Bsh1285I	CGRYCG	1 cut(s)	1042
BshFI	GGCC	4 cut(s)	340, 451, 807, 996
BshTI	ACCGGT	1 cut(s)	194
BsiEI	CGRYCG	1 cut(s)	1042
BsiHKAI	GWGCWC	4 cut(s)	174, 205, 742, 843
BsiHKCI	CYCGRG	1 cut(s)	1264
BsiSI	CCGG	3 cut(s)	195, 356, 1292
BslI	CCNNNNNNNGG	6 cut(s)	11, 12, 347, 524, 1089, 1270
BsmAI	GTCTC	1 cut(s)	1247
BsmI	GAATGC	1 cut(s)	753
BsnI	GGCC	4 cut(s)	340, 451, 807, 996
Bso31I	GGTCTC	1 cut(s)	1247
BsoBI	CYCGRG	1 cut(s)	1264
Bsp1286I	GDGCHC	4 cut(s)	174, 205, 742, 843
BspACI	CCGC	2 cut(s)	455, 751
BspANI	GGCC	4 cut(s)	340, 451, 807, 996
BspCNI	CTCAG	2 cut(s)	160, 661
BspHI	TCATGA	3 cut(s)	205, 690, 1138
BspLI	GGNNCC	2 cut(s)	540, 576
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	8 cut(s)	420, 533, 546, 569, 582, 864, 949, 1249
BspQI	GCTCTTC	1 cut(s)	1223
BspTNI	GGTCTC	1 cut(s)	1247
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	1160, 1301
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	4 cut(s)	6, 407, 420, 1047
BssT1I	CCWWGG	3 cut(s)	6, 407, 420
Bst4CI	ACNGT	4 cut(s)	266, 371, 904, 1035
Bst6I	CTCTTC	3 cut(s)	106, 1105, 1223
BstC8I	GCNNGC	2 cut(s)	924, 998
BstDEI	CTNAG	3 cut(s)	168, 281, 669
BstF5I	GGATG	2 cut(s)	415, 853
BstHHI	GCGC	1 cut(s)	1002
BstMAI	GTCTC	1 cut(s)	1247
BstMCI	CGRYCG	1 cut(s)	1042
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstSFI	CTRYAG	1 cut(s)	924
BstV1I	GCAGC	2 cut(s)	938, 1066
BstV2I	GAAGAC	1 cut(s)	245
BstX2I	RGATCY	5 cut(s)	538, 574, 856, 941, 1241
BstYI	RGATCY	5 cut(s)	538, 574, 856, 941, 1241
BsuRI	GGCC	4 cut(s)	340, 451, 807, 996
BtsCI	GGATG	2 cut(s)	415, 853
BtsI	GCAGTG	1 cut(s)	982
BtsIMutI	CAGTG	4 cut(s)	165, 912, 981, 982
Cac8I	GCNNGC	2 cut(s)	924, 998
CciI	TCATGA	3 cut(s)	205, 690, 1138
CfoI	GCGC	1 cut(s)	1002
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	659, 1031, 1044
CseI	GACGC	1 cut(s)	195
CspAI	ACCGGT	1 cut(s)	194
DdeI	CTNAG	3 cut(s)	168, 281, 669
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	3 cut(s)	106, 1105, 1223
EarI	CTCTTC	3 cut(s)	106, 1105, 1223
EciI	GGCGGA	1 cut(s)	444
Ecl136II	GAGCTC	4 cut(s)	172, 203, 740, 841
Eco130I	CCWWGG	3 cut(s)	6, 407, 420
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	4 cut(s)	174, 205, 742, 843
Eco31I	GGTCTC	1 cut(s)	1247
Eco47I	GGWCC	3 cut(s)	659, 1031, 1044
Eco53kI	GAGCTC	4 cut(s)	172, 203, 740, 841
Eco57I	CTGAAG	2 cut(s)	918, 1247
Eco88I	CYCGRG	1 cut(s)	1264
EcoICRI	GAGCTC	4 cut(s)	172, 203, 740, 841
EcoT14I	CCWWGG	3 cut(s)	6, 407, 420
EcoT38I	GRGCYC	4 cut(s)	174, 205, 742, 843
ErhI	CCWWGG	3 cut(s)	6, 407, 420
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	2 cut(s)	927, 1055
FokI	GGATG	2 cut(s)	402, 860
FriOI	GRGCYC	4 cut(s)	174, 205, 742, 843
Fsp4HI	GCNGC	2 cut(s)	927, 1055
FspBI	CTAG	5 cut(s)	179, 270, 774, 866, 1131
FspI	TGCGCA	1 cut(s)	1001
GlaI	GCGC	1 cut(s)	1001
GluI	GCNGC	2 cut(s)	927, 1055
HaeIII	GGCC	4 cut(s)	340, 451, 807, 996
HapII	CCGG	3 cut(s)	195, 356, 1292
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	1002
Hin6I	GCGC	1 cut(s)	1000
HinP1I	GCGC	1 cut(s)	1000
HinfI	GANTC	4 cut(s)	352, 403, 425, 1211
HpaII	CCGG	3 cut(s)	195, 356, 1292
HphI	GGTGA	3 cut(s)	140, 184, 959
Hpy166II	GTNNAC	5 cut(s)	131, 513, 756, 1031, 1278
Hpy188I	TCNGA	5 cut(s)	328, 670, 744, 937, 1039
Hpy188III	TCNNGA	6 cut(s)	56, 206, 691, 1019, 1139, 1202
Hpy8I	GTNNAC	5 cut(s)	131, 513, 756, 1031, 1278
Hpy99I	CGWCG	2 cut(s)	189, 394
HpyAV	CCTTC	7 cut(s)	5, 77, 468, 483, 492, 589, 776
HpyCH4III	ACNGT	4 cut(s)	266, 371, 904, 1035
HpyCH4IV	ACGT	2 cut(s)	1027, 1280
HpyCH4V	TGCA	4 cut(s)	601, 926, 1054, 1177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	3 cut(s)	168, 281, 669
HpySE526I	ACGT	2 cut(s)	1027, 1280
HspAI	GCGC	1 cut(s)	1000
LguI	GCTCTTC	1 cut(s)	1223
LmnI	GCTCC	3 cut(s)	200, 500, 745
Lsp1109I	GCAGC	2 cut(s)	938, 1066
MaeI	CTAG	5 cut(s)	179, 270, 774, 866, 1131
MaeII	ACGT	2 cut(s)	1027, 1280
MaeIII	GTNAC	2 cut(s)	284, 1094
MfeI	CAATTG	2 cut(s)	969, 1172
MflI	RGATCY	5 cut(s)	538, 574, 856, 941, 1241
MhlI	GDGCHC	4 cut(s)	174, 205, 742, 843
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	9 cut(s)	108, 151, 645, 663, 969, 1013, 1172, 1197, 1246
MluNI	TGGCCA	1 cut(s)	807
MmeI	TCCRAC	2 cut(s)	612, 637
Mox20I	TGGCCA	1 cut(s)	807
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	3 cut(s)	345, 555, 906
Msp20I	TGGCCA	1 cut(s)	807
MspI	CCGG	3 cut(s)	195, 356, 1292
MunI	CAATTG	2 cut(s)	969, 1172
Mva1269I	GAATGC	1 cut(s)	753
MwoI	GCNNNNNNNGC	1 cut(s)	514
NlaIV	GGNNCC	2 cut(s)	540, 576
NmuCI	GTSAC	1 cut(s)	284
NsbI	TGCGCA	1 cut(s)	1001
PagI	TCATGA	3 cut(s)	205, 690, 1138
PceI	AGGCCT	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	1223
PctI	GAATGC	1 cut(s)	753
PfeI	GAWTC	4 cut(s)	352, 403, 425, 1211
PflMI	CCANNNNNTGG	1 cut(s)	1089
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	2 cut(s)	928, 1056
Ple19I	CGATCG	1 cut(s)	1042
Psp124BI	GAGCTC	4 cut(s)	174, 205, 742, 843
PspN4I	GGNNCC	2 cut(s)	540, 576
PspPI	GGNCC	3 cut(s)	659, 1031, 1044
PstI	CTGCAG	1 cut(s)	928
PsuI	RGATCY	5 cut(s)	538, 574, 856, 941, 1241
PvuI	CGATCG	1 cut(s)	1042
SacI	GAGCTC	4 cut(s)	174, 205, 742, 843
SapI	GCTCTTC	1 cut(s)	1223
SaqAI	TTAA	3 cut(s)	345, 555, 906
SatI	GCNGC	2 cut(s)	927, 1055
Sau96I	GGNCC	3 cut(s)	659, 1031, 1044
SduI	GDGCHC	4 cut(s)	174, 205, 742, 843
SfcI	CTRYAG	1 cut(s)	924
SgrAI	CRCCGGYG	1 cut(s)	194
SinI	GGWCC	3 cut(s)	659, 1031, 1044
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
SpeI	ACTAGT	1 cut(s)	1130
Sse9I	AATT	9 cut(s)	108, 151, 645, 663, 969, 1013, 1172, 1197, 1246
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	2 cut(s)	455, 751
SspMI	CTAG	5 cut(s)	179, 270, 774, 866, 1131
SstI	GAGCTC	4 cut(s)	174, 205, 742, 843
StuI	AGGCCT	1 cut(s)	451
StyI	CCWWGG	3 cut(s)	6, 407, 420
TaaI	ACNGT	4 cut(s)	266, 371, 904, 1035
TaiI	ACGT	2 cut(s)	1030, 1283
TaqI	TCGA	4 cut(s)	312, 698, 898, 1065
TaqII	GACCGA	1 cut(s)	1032
TasI	AATT	9 cut(s)	108, 151, 645, 663, 969, 1013, 1172, 1197, 1246
TfiI	GAWTC	4 cut(s)	352, 403, 425, 1211
Tru1I	TTAA	3 cut(s)	345, 555, 906
Tru9I	TTAA	3 cut(s)	345, 555, 906
TscAI	CASTG	4 cut(s)	172, 919, 982, 988
TseFI	GTSAC	1 cut(s)	284
TseI	GCWGC	2 cut(s)	926, 1054
Tsp45I	GTSAC	1 cut(s)	284
TspDTI	ATGAA	9 cut(s)	10, 93, 222, 608, 617, 758, 773, 825, 980
TspGWI	ACGGA	2 cut(s)	407, 954
TspRI	CASTG	4 cut(s)	172, 919, 982, 988
Van91I	CCANNNNNTGG	1 cut(s)	1089
VpaK11BI	GGWCC	3 cut(s)	659, 1031, 1044
XapI	RAATTY	1 cut(s)	1197
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	5 cut(s)	179, 270, 774, 866, 1131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.